Wall clock time and date at job start Tue Mar 31 2020 14:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99676 * 2 1 4 4 C 1.50702 * 109.47458 * 270.00169 * 3 2 1 5 5 H 1.08007 * 119.99580 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00251 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00212 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99942 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47312 * 89.99705 * 8 6 4 10 10 H 1.48494 * 109.47098 * 209.99537 * 8 6 4 11 11 H 1.48499 * 109.47266 * 329.99823 * 8 6 4 12 12 C 1.39676 * 120.00261 * 180.02562 * 2 1 3 13 13 C 1.38906 * 120.07171 * 359.97438 * 12 2 1 14 14 C 1.38111 * 119.92343 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.07382 * 0.28047 * 14 13 12 16 16 C 1.50698 * 119.92407 * 179.69843 * 15 14 13 17 17 N 1.46495 * 109.46886 * 89.99908 * 16 15 14 18 18 C 1.46494 * 120.00490 * 269.99914 * 17 16 15 19 19 C 1.39674 * 119.99598 * 90.00277 * 17 16 15 20 20 C 1.38968 * 120.05033 * 359.71626 * 19 17 16 21 21 C 1.38119 * 120.03664 * 179.76845 * 20 19 17 22 22 C 1.38215 * 120.12535 * 0.51149 * 21 20 19 23 23 C 1.38769 * 120.09343 * 359.74873 * 22 21 20 24 24 O 1.35905 * 120.01452 * 179.97438 * 23 22 21 25 25 C 1.38610 * 119.96560 * 359.97438 * 23 22 21 26 26 C 1.38286 * 120.14755 * 359.44532 * 15 14 13 27 27 C 1.38112 * 120.07587 * 0.55318 * 26 15 14 28 28 H 1.09003 * 109.46748 * 269.99794 * 1 2 3 29 29 H 1.09000 * 109.47356 * 29.99379 * 1 2 3 30 30 H 1.09000 * 109.47257 * 150.00063 * 1 2 3 31 31 H 1.08994 * 109.47318 * 30.00718 * 3 2 1 32 32 H 1.09001 * 109.47009 * 150.00441 * 3 2 1 33 33 H 0.96992 * 120.00096 * 180.02562 * 7 6 4 34 34 H 1.08000 * 120.03932 * 359.96119 * 13 12 2 35 35 H 1.08002 * 119.96028 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.46776 * 210.00059 * 16 15 14 37 37 H 1.09003 * 109.47041 * 330.00009 * 16 15 14 38 38 H 1.09004 * 109.47478 * 90.00035 * 18 17 16 39 39 H 1.09007 * 109.47512 * 210.00273 * 18 17 16 40 40 H 1.09001 * 109.47035 * 330.00393 * 18 17 16 41 41 H 1.08004 * 119.97707 * 0.02976 * 20 19 17 42 42 H 1.07999 * 119.93171 * 180.23700 * 21 20 19 43 43 H 1.08001 * 119.94751 * 179.71619 * 22 21 20 44 44 H 0.96696 * 113.99675 * 270.01547 * 24 23 22 45 45 H 1.08004 * 120.06563 * 180.02562 * 25 23 22 46 46 H 1.08002 * 119.96005 * 180.25011 * 26 15 14 47 47 H 1.07998 * 120.03717 * 179.70130 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5540 3.6178 -0.6731 8 14 3.4374 3.4173 -3.4339 9 1 2.3074 4.2608 -3.8998 10 1 4.6979 4.1997 -3.4968 11 1 3.5536 2.2204 -4.3052 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1642 -3.6077 -0.0016 15 6 3.5470 -3.6059 0.0032 16 6 4.3005 -4.9109 0.0089 17 7 4.5494 -5.3370 -1.3705 18 6 3.5752 -6.1845 -2.0625 19 6 5.7157 -4.9353 -2.0257 20 6 6.6377 -4.1267 -1.3722 21 6 7.7932 -3.7336 -2.0188 22 6 8.0305 -4.1342 -3.3202 23 6 7.1108 -4.9373 -3.9796 24 8 7.3455 -5.3300 -5.2594 25 6 5.9527 -5.3388 -3.3324 26 6 4.2400 -2.4092 -0.0025 27 6 3.5525 -1.2113 -0.0015 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1384 0.5138 33 1 4.0308 4.4436 -0.8504 34 1 0.3905 -2.4156 0.0005 35 1 1.6260 -4.5441 -0.0012 36 1 5.2511 -4.7793 0.5257 37 1 3.7096 -5.6694 0.5225 38 1 2.8503 -5.5564 -2.5804 39 1 4.0916 -6.8155 -2.7860 40 1 3.0589 -6.8121 -1.3362 41 1 6.4527 -3.8089 -0.3567 42 1 8.5104 -3.1082 -1.5080 43 1 8.9328 -3.8214 -3.8246 44 1 6.9978 -4.7230 -5.9270 45 1 5.2360 -5.9642 -3.8440 46 1 5.3200 -2.4113 -0.0029 47 1 4.0943 -0.2770 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827907600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:38 Heat of formation + Delta-G solvation = 31.202766 kcal Electronic energy + Delta-G solvation = -27183.068142 eV Core-core repulsion = 23524.305475 eV Total energy + Delta-G solvation = -3658.762666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98778 -39.01277 -37.61620 -35.98512 -35.02553 -32.76862 -31.15923 -30.57340 -29.54620 -29.49800 -27.84900 -27.07893 -25.28486 -24.15624 -22.55128 -22.26486 -21.52980 -20.90816 -19.63473 -18.29643 -16.86453 -16.67483 -16.47817 -15.99010 -15.53494 -15.19958 -15.15990 -14.64384 -14.43042 -14.17840 -14.15381 -13.75414 -13.73257 -13.24304 -13.02921 -12.93285 -12.27867 -12.21031 -12.15631 -11.99304 -11.90853 -11.77021 -11.45386 -11.33241 -11.19283 -11.15425 -10.88060 -10.71279 -10.51813 -10.26791 -9.93204 -9.80774 -9.70107 -8.89329 -8.65075 -8.53428 -8.32421 -7.23754 -6.51613 -6.05376 -4.20359 1.38488 1.63996 2.06091 2.09845 3.24061 3.24946 3.31243 3.35969 3.79747 4.10260 4.31207 4.38514 4.51887 4.89695 4.93235 5.16998 5.18941 5.20880 5.25651 5.32724 5.41760 5.49970 5.52494 5.61127 5.66643 5.73845 5.76010 5.78783 5.89287 5.97461 6.03045 6.22638 6.27125 6.32926 6.38849 6.52171 6.57411 6.62672 6.71983 6.89383 6.97365 7.11719 7.20346 7.28960 7.33134 7.48534 7.55088 7.70078 7.78000 8.11897 8.21981 8.43479 8.88357 9.46703 10.92840 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003798 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.187041 B = 7371.370163 C = 9232.180791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.615 5.615 3 C 0.249 3.751 4 C -0.532 4.532 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.245 3.755 13 C -0.224 4.224 14 C -0.059 4.059 15 C -0.198 4.198 16 C 0.177 3.823 17 N -0.622 5.622 18 C 0.094 3.906 19 C 0.241 3.759 20 C -0.203 4.203 21 C -0.056 4.056 22 C -0.209 4.209 23 C 0.146 3.854 24 O -0.505 6.505 25 C -0.230 4.230 26 C -0.057 4.057 27 C -0.187 4.187 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.128 0.872 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.390 0.610 45 H 0.125 0.875 46 H 0.112 0.888 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -17.788 -0.616 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.320 5.320 3 C 0.129 3.871 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.137 3.863 13 C -0.247 4.247 14 C -0.078 4.078 15 C -0.202 4.202 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.049 4.049 19 C 0.138 3.862 20 C -0.225 4.225 21 C -0.075 4.075 22 C -0.229 4.229 23 C 0.101 3.899 24 O -0.315 6.315 25 C -0.253 4.253 26 C -0.077 4.077 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.138 0.862 44 H 0.246 0.754 45 H 0.143 0.857 46 H 0.130 0.870 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.978 -17.943 -0.202 18.053 hybrid contribution -0.219 1.009 -1.396 1.737 sum 1.759 -16.933 -1.598 17.099 Atomic orbital electron populations 1.21478 0.81483 1.01933 0.99715 1.47131 1.04416 1.04669 1.75761 1.19292 0.92072 0.78697 0.97016 1.21563 1.36467 1.06462 0.92598 0.92327 1.24945 0.95345 0.96265 0.97384 1.69922 1.38317 1.14336 1.30762 0.86537 0.77751 0.78719 0.84740 1.20599 1.21005 1.19812 1.17969 0.91520 0.85990 0.90821 1.20543 0.98974 0.91439 1.13732 1.20469 0.93190 0.96448 0.97695 1.19697 0.93798 0.94523 1.12189 1.20188 0.99358 0.93447 0.81547 1.46647 1.18975 1.53805 1.13681 1.21608 0.92089 0.93811 0.97436 1.17589 0.86053 0.91897 0.90683 1.20827 0.95915 1.04337 1.01457 1.20760 0.96008 0.96888 0.93802 1.21097 1.01553 1.03561 0.96738 1.18137 0.92580 0.94323 0.84841 1.84755 1.81341 1.51565 1.13852 1.20816 0.99857 1.09195 0.95399 1.20758 0.98715 0.91545 0.96651 1.20890 0.92680 0.98809 1.08616 0.94557 0.91415 0.92723 0.95184 0.94608 0.92612 0.86940 0.87667 0.90542 0.90740 0.93346 0.91703 0.91676 0.85479 0.85781 0.86183 0.75440 0.85748 0.86999 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.70 10.19 59.85 0.61 2.31 16 2 N -0.61 -13.03 2.99 -181.00 -0.54 -13.58 16 3 C 0.25 6.20 4.91 -5.19 -0.03 6.17 16 4 C -0.53 -14.48 9.39 -34.44 -0.32 -14.81 16 5 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.49 13.29 55.43 0.74 -24.76 16 8 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.24 4.88 6.55 -83.79 -0.55 4.33 16 13 C -0.22 -3.80 9.21 -39.38 -0.36 -4.16 16 14 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 15 C -0.20 -2.91 5.46 -104.59 -0.57 -3.48 16 16 C 0.18 2.07 5.40 -5.20 -0.03 2.04 16 17 N -0.62 -7.54 2.99 -181.02 -0.54 -8.08 16 18 C 0.09 0.92 10.23 59.84 0.61 1.54 16 19 C 0.24 3.23 6.55 -83.81 -0.55 2.68 16 20 C -0.20 -2.67 8.45 -39.35 -0.33 -3.00 16 21 C -0.06 -0.70 10.03 -39.63 -0.40 -1.09 16 22 C -0.21 -2.65 9.98 -39.39 -0.39 -3.05 16 23 C 0.15 1.90 6.70 -39.25 -0.26 1.64 16 24 O -0.50 -5.81 13.50 -19.44 -0.26 -6.07 16 25 C -0.23 -3.01 9.14 -39.24 -0.36 -3.37 16 26 C -0.06 -0.96 9.33 -39.61 -0.37 -1.33 16 27 C -0.19 -3.75 9.21 -39.38 -0.36 -4.12 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 30 H 0.05 0.84 6.20 -51.93 -0.32 0.52 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.37 16 32 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.11 1.73 6.14 -52.49 -0.32 1.40 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 36 H 0.08 0.84 6.15 -51.93 -0.32 0.52 16 37 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.58 6.19 -51.93 -0.32 0.26 16 40 H 0.06 0.52 7.89 -51.93 -0.41 0.11 16 41 H 0.13 1.56 4.34 -52.48 -0.23 1.33 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 44 H 0.39 2.77 9.06 45.56 0.41 3.18 16 45 H 0.12 1.48 6.14 -52.48 -0.32 1.15 16 46 H 0.11 1.70 5.78 -52.49 -0.30 1.40 16 47 H 0.13 2.92 6.14 -52.49 -0.32 2.60 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -31.17 380.30 -9.73 -40.90 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -5.68 Total: 6.89 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -4.14 Total: -17.32 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: -0.35 Total: -46.42 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.26 Total: -6.07 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.17 -9.73 -40.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827907600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.098 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds