Wall clock time and date at job start Tue Mar 31 2020 14:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46500 * 119.99676 * 2 1 4 4 C 1.50702 * 109.47458 * 270.00169 * 3 2 1 5 5 H 1.08007 * 119.99580 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00251 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00212 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99942 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47312 * 89.99705 * 8 6 4 10 10 H 1.48494 * 109.47098 * 209.99537 * 8 6 4 11 11 H 1.48499 * 109.47266 * 329.99823 * 8 6 4 12 12 C 1.39676 * 120.00261 * 180.02562 * 2 1 3 13 13 C 1.38906 * 120.07171 * 359.97438 * 12 2 1 14 14 C 1.38111 * 119.92343 * 179.97438 * 13 12 2 15 15 C 1.38288 * 120.07382 * 0.28047 * 14 13 12 16 16 C 1.50698 * 119.92407 * 179.69843 * 15 14 13 17 17 N 1.46495 * 109.46886 * 89.99908 * 16 15 14 18 18 C 1.46494 * 120.00490 * 269.99914 * 17 16 15 19 19 C 1.39674 * 119.99598 * 90.00277 * 17 16 15 20 20 C 1.38968 * 120.05033 * 359.71626 * 19 17 16 21 21 C 1.38119 * 120.03664 * 179.76845 * 20 19 17 22 22 C 1.38215 * 120.12535 * 0.51149 * 21 20 19 23 23 C 1.38769 * 120.09343 * 359.74873 * 22 21 20 24 24 O 1.35905 * 120.01452 * 179.97438 * 23 22 21 25 25 C 1.38610 * 119.96560 * 359.97438 * 23 22 21 26 26 C 1.38286 * 120.14755 * 359.44532 * 15 14 13 27 27 C 1.38112 * 120.07587 * 0.55318 * 26 15 14 28 28 H 1.09003 * 109.46748 * 269.99794 * 1 2 3 29 29 H 1.09000 * 109.47356 * 29.99379 * 1 2 3 30 30 H 1.09000 * 109.47257 * 150.00063 * 1 2 3 31 31 H 1.08994 * 109.47318 * 30.00718 * 3 2 1 32 32 H 1.09001 * 109.47009 * 150.00441 * 3 2 1 33 33 H 0.96992 * 120.00096 * 180.02562 * 7 6 4 34 34 H 1.08000 * 120.03932 * 359.96119 * 13 12 2 35 35 H 1.08002 * 119.96028 * 179.97438 * 14 13 12 36 36 H 1.09001 * 109.46776 * 210.00059 * 16 15 14 37 37 H 1.09003 * 109.47041 * 330.00009 * 16 15 14 38 38 H 1.09004 * 109.47478 * 90.00035 * 18 17 16 39 39 H 1.09007 * 109.47512 * 210.00273 * 18 17 16 40 40 H 1.09001 * 109.47035 * 330.00393 * 18 17 16 41 41 H 1.08004 * 119.97707 * 0.02976 * 20 19 17 42 42 H 1.07999 * 119.93171 * 180.23700 * 21 20 19 43 43 H 1.08001 * 119.94751 * 179.71619 * 22 21 20 44 44 H 0.96696 * 113.99675 * 270.01547 * 24 23 22 45 45 H 1.08004 * 120.06563 * 180.02562 * 25 23 22 46 46 H 1.08002 * 119.96005 * 180.25011 * 26 15 14 47 47 H 1.07998 * 120.03717 * 179.70130 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7039 -1.4208 5 1 2.0973 1.0963 -2.2417 6 6 3.1267 2.8776 -1.6727 7 7 3.5540 3.6178 -0.6731 8 14 3.4374 3.4173 -3.4339 9 1 2.3074 4.2608 -3.8998 10 1 4.6979 4.1997 -3.4968 11 1 3.5536 2.2204 -4.3052 12 6 2.1634 -1.2096 -0.0005 13 6 1.4704 -2.4135 -0.0005 14 6 2.1642 -3.6077 -0.0016 15 6 3.5470 -3.6059 0.0032 16 6 4.3005 -4.9109 0.0089 17 7 4.5494 -5.3370 -1.3705 18 6 3.5752 -6.1845 -2.0625 19 6 5.7157 -4.9353 -2.0257 20 6 6.6377 -4.1267 -1.3722 21 6 7.7932 -3.7336 -2.0188 22 6 8.0305 -4.1342 -3.3202 23 6 7.1108 -4.9373 -3.9796 24 8 7.3455 -5.3300 -5.2594 25 6 5.9527 -5.3388 -3.3324 26 6 4.2400 -2.4092 -0.0025 27 6 3.5525 -1.2113 -0.0015 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5139 32 1 3.1499 1.1384 0.5138 33 1 4.0308 4.4436 -0.8504 34 1 0.3905 -2.4156 0.0005 35 1 1.6260 -4.5441 -0.0012 36 1 5.2511 -4.7793 0.5257 37 1 3.7096 -5.6694 0.5225 38 1 2.8503 -5.5564 -2.5804 39 1 4.0916 -6.8155 -2.7860 40 1 3.0589 -6.8121 -1.3362 41 1 6.4527 -3.8089 -0.3567 42 1 8.5104 -3.1082 -1.5080 43 1 8.9328 -3.8214 -3.8246 44 1 6.9978 -4.7230 -5.9270 45 1 5.2360 -5.9642 -3.8440 46 1 5.3200 -2.4113 -0.0029 47 1 4.0943 -0.2770 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827907600.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:37 Heat of formation + Delta-G solvation = 13.724373 kcal Electronic energy + Delta-G solvation = -27183.826062 eV Core-core repulsion = 23524.305475 eV Total energy + Delta-G solvation = -3659.520586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99297 -40.28563 -38.63571 -37.28025 -36.13069 -34.77070 -32.32331 -31.93785 -30.63138 -30.46440 -29.62638 -28.16882 -26.63874 -25.53726 -24.03827 -23.33729 -22.84044 -21.95767 -20.97636 -19.22944 -18.65833 -18.15698 -17.69659 -16.94143 -16.87988 -16.50176 -16.30130 -16.04641 -15.62164 -15.39070 -15.34205 -15.14894 -14.66704 -14.56446 -14.34006 -14.25354 -14.04085 -13.28404 -13.18927 -13.18257 -13.07255 -12.92706 -12.87254 -12.76512 -12.68853 -12.56299 -12.36888 -12.23336 -12.01140 -11.76409 -11.45938 -11.31548 -10.68077 -10.65962 -10.43070 -9.68053 -9.60671 -8.39060 -8.18022 -7.81778 -6.39499 0.42524 0.65241 0.70811 0.81034 1.34042 1.35586 1.46262 2.29549 2.33745 2.61929 2.85834 3.04164 3.18423 3.43121 3.95947 4.01119 4.13789 4.18588 4.25616 4.32451 4.37751 4.42682 4.45262 4.61611 4.64229 4.70355 4.76515 4.80024 4.82803 4.85770 4.88808 4.96950 4.99540 5.04354 5.10858 5.18409 5.28979 5.35425 5.56494 5.57830 5.64430 5.67884 5.68906 5.81403 5.90316 6.05110 6.20349 6.42686 6.48186 6.56936 6.80621 6.89470 6.92242 7.32438 8.81208 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.009846 B = 0.003798 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2843.187041 B = 7371.370163 C = 9232.180791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.632 5.632 3 C 0.268 3.732 4 C -0.542 4.542 5 H 0.046 0.954 6 C 0.015 3.985 7 N -0.925 5.925 8 Si 0.958 3.042 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.275 1.275 12 C 0.214 3.786 13 C -0.220 4.220 14 C -0.051 4.051 15 C -0.183 4.183 16 C 0.177 3.823 17 N -0.624 5.624 18 C 0.089 3.911 19 C 0.229 3.771 20 C -0.219 4.219 21 C -0.063 4.063 22 C -0.222 4.222 23 C 0.139 3.861 24 O -0.512 6.512 25 C -0.241 4.241 26 C -0.061 4.061 27 C -0.219 4.219 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.268 0.732 34 H 0.133 0.867 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.132 0.868 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.408 0.592 45 H 0.134 0.866 46 H 0.121 0.879 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.199 -20.545 -1.374 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.340 5.340 3 C 0.146 3.854 4 C -0.581 4.581 5 H 0.065 0.935 6 C -0.184 4.184 7 N -0.565 5.565 8 Si 0.783 3.217 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.199 1.199 12 C 0.109 3.891 13 C -0.243 4.243 14 C -0.070 4.070 15 C -0.186 4.186 16 C 0.055 3.945 17 N -0.333 5.333 18 C -0.053 4.053 19 C 0.126 3.874 20 C -0.241 4.241 21 C -0.082 4.082 22 C -0.243 4.243 23 C 0.094 3.906 24 O -0.325 6.325 25 C -0.264 4.264 26 C -0.080 4.080 27 C -0.242 4.242 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.125 0.875 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.267 0.733 45 H 0.152 0.848 46 H 0.139 0.861 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.247 -20.735 -0.971 20.795 hybrid contribution 0.055 1.732 -1.163 2.087 sum 1.303 -19.003 -2.134 19.167 Atomic orbital electron populations 1.21601 0.79389 1.02486 1.01000 1.46982 1.05651 1.03770 1.77584 1.18753 0.91042 0.80285 0.95340 1.21755 1.36492 1.06529 0.93299 0.93532 1.25738 0.95025 0.96300 1.01353 1.70025 1.38941 1.14769 1.32742 0.85550 0.78077 0.78219 0.79827 1.19425 1.20259 1.19947 1.18248 0.91590 0.86578 0.92666 1.20821 1.00055 0.90796 1.12613 1.20926 0.93286 0.97240 0.95578 1.20099 0.94235 0.95064 1.09226 1.20294 0.99878 0.92450 0.81888 1.46738 1.18904 1.53824 1.13813 1.21770 0.91593 0.93691 0.98249 1.17777 0.86698 0.91998 0.90966 1.20993 0.96385 1.04857 1.01873 1.21027 0.96289 0.96879 0.93962 1.21314 1.02099 1.03842 0.97008 1.18302 0.92643 0.94146 0.85474 1.84701 1.81597 1.52393 1.13790 1.20985 1.00248 1.09636 0.95550 1.20921 0.99328 0.91408 0.96338 1.20775 0.93288 0.98531 1.11599 0.92823 0.92614 0.90346 0.97272 0.97171 0.92342 0.84975 0.83571 0.89929 0.87513 0.94192 0.91047 0.89038 0.85085 0.84255 0.85147 0.73320 0.84787 0.86132 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.39 10.19 127.77 1.30 4.69 16 2 N -0.63 -27.70 2.99 -726.57 -2.17 -29.87 16 3 C 0.27 14.15 4.91 85.63 0.42 14.57 16 4 C -0.54 -30.77 9.39 25.60 0.24 -30.53 16 5 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 6 C 0.02 0.86 5.46 84.65 0.46 1.33 16 7 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 12 C 0.21 8.68 6.55 38.21 0.25 8.93 16 13 C -0.22 -7.00 9.21 22.40 0.21 -6.80 16 14 C -0.05 -1.33 9.69 22.25 0.22 -1.12 16 15 C -0.18 -4.89 5.46 -19.84 -0.11 -5.00 16 16 C 0.18 3.50 5.40 85.63 0.46 3.96 16 17 N -0.62 -13.23 2.99 -726.63 -2.17 -15.41 16 18 C 0.09 1.44 10.23 127.77 1.31 2.74 16 19 C 0.23 5.75 6.55 38.20 0.25 6.00 16 20 C -0.22 -5.53 8.45 22.42 0.19 -5.34 16 21 C -0.06 -1.53 10.03 22.24 0.22 -1.30 16 22 C -0.22 -5.45 9.98 22.39 0.22 -5.23 16 23 C 0.14 3.48 6.70 22.49 0.15 3.63 16 24 O -0.51 -11.06 13.50 -92.48 -1.25 -12.30 16 25 C -0.24 -5.97 9.14 22.49 0.21 -5.77 16 26 C -0.06 -2.04 9.33 22.25 0.21 -1.83 16 27 C -0.22 -9.19 9.21 22.40 0.21 -8.98 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 2.01 8.07 -2.39 -0.02 1.99 16 30 H 0.08 2.28 6.20 -2.39 -0.01 2.26 16 31 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 32 H 0.01 0.59 6.20 -2.39 -0.01 0.57 16 33 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 34 H 0.13 3.62 6.14 -2.91 -0.02 3.61 16 35 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 36 H 0.08 1.57 6.15 -2.39 -0.01 1.56 16 37 H 0.11 1.50 7.84 -2.39 -0.02 1.48 16 38 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.07 1.06 6.19 -2.38 -0.01 1.04 16 40 H 0.09 0.99 7.89 -2.39 -0.02 0.97 16 41 H 0.13 3.09 4.34 -2.91 -0.01 3.07 16 42 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 43 H 0.13 2.81 8.06 -2.91 -0.02 2.79 16 44 H 0.41 5.20 9.06 -74.06 -0.67 4.53 16 45 H 0.13 2.93 6.14 -2.91 -0.02 2.91 16 46 H 0.12 3.71 5.78 -2.91 -0.02 3.69 16 47 H 0.09 4.49 6.14 -2.91 -0.02 4.47 16 Total: -1.00 -69.91 380.30 3.46 -66.45 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.33 Total: 24.92 kcal Atomic # 6 Polarization: -32.47 SS G_CDS: 6.41 Total: -26.06 kcal Atomic # 7 Polarization: -95.44 SS G_CDS: -4.06 Total: -99.50 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.25 Total: -12.30 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -69.91 3.46 -66.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827907600.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.176 kcal (2) G-P(sol) polarization free energy of solvation -69.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds