Wall clock time and date at job start Tue Mar 31 2020 15:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 C 1.52995 * 109.47388 * 120.00159 * 2 1 3 5 5 H 1.09008 * 109.47388 * 304.83322 * 4 2 1 6 6 C 1.50700 * 109.47316 * 184.83556 * 4 2 1 7 7 O 1.20824 * 119.99780 * 287.33454 * 6 4 2 8 8 O 1.34227 * 119.99999 * 107.33580 * 6 4 2 9 9 C 1.45203 * 116.99672 * 179.00376 * 8 6 4 10 10 C 1.53004 * 109.46827 * 185.08181 * 9 8 6 11 11 C 1.50698 * 115.55367 * 306.71283 * 10 9 8 12 12 H 1.07994 * 120.00699 * 145.27068 * 11 10 9 13 13 C 1.37881 * 119.99433 * 325.27653 * 11 10 9 14 14 N 1.31508 * 120.00349 * 352.67463 * 13 11 10 15 15 Si 1.86803 * 119.99666 * 172.67924 * 13 11 10 16 16 H 1.48503 * 109.47088 * 89.99520 * 15 13 11 17 17 H 1.48496 * 109.47098 * 209.99913 * 15 13 11 18 18 H 1.48506 * 109.47178 * 329.99938 * 15 13 11 19 19 C 1.53007 * 117.49925 * 161.03991 * 10 9 8 20 20 C 1.53004 * 117.49924 * 92.38154 * 10 9 8 21 21 C 1.50704 * 109.47309 * 64.83217 * 4 2 1 22 22 O 1.20826 * 119.99475 * 119.99927 * 21 4 2 23 23 O 1.34225 * 119.99966 * 300.00492 * 21 4 2 24 24 C 1.45200 * 116.99813 * 179.97438 * 23 21 4 25 25 C 1.53001 * 109.47213 * 60.00097 * 24 23 21 26 26 C 1.53006 * 109.46767 * 179.97438 * 24 23 21 27 27 C 1.52993 * 109.47285 * 299.99621 * 24 23 21 28 28 H 1.08994 * 109.47316 * 60.00324 * 1 2 3 29 29 H 1.08997 * 109.46967 * 299.99538 * 1 2 3 30 30 H 1.09003 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47233 * 240.00035 * 2 1 3 32 32 H 1.09000 * 109.47032 * 180.66642 * 3 2 1 33 33 H 1.08999 * 109.47333 * 300.66644 * 3 2 1 34 34 H 1.08999 * 109.46898 * 60.66960 * 3 2 1 35 35 H 1.08994 * 109.47281 * 305.07983 * 9 8 6 36 36 H 1.08993 * 109.47373 * 65.08817 * 9 8 6 37 37 H 0.96998 * 120.00110 * 185.05548 * 14 13 11 38 38 H 1.09003 * 117.49558 * 0.02562 * 19 10 9 39 39 H 1.08997 * 117.49438 * 145.01927 * 19 10 9 40 40 H 1.08999 * 117.50100 * 214.98145 * 20 10 9 41 41 H 1.08999 * 117.49781 * 359.97438 * 20 10 9 42 42 H 1.08999 * 109.47230 * 59.99584 * 25 24 23 43 43 H 1.09000 * 109.47272 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46786 * 300.00267 * 25 24 23 45 45 H 1.09000 * 109.46627 * 60.00569 * 26 24 23 46 46 H 1.09000 * 109.46834 * 180.02562 * 26 24 23 47 47 H 1.08994 * 109.47789 * 300.00087 * 26 24 23 48 48 H 1.09007 * 109.46727 * 60.00259 * 27 24 23 49 49 H 1.09000 * 109.47160 * 180.02562 * 27 24 23 50 50 H 1.08995 * 109.47374 * 300.00127 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6078 -0.2599 2.1372 6 6 3.5423 -0.6184 1.3105 7 8 4.2235 -1.2616 0.5476 8 8 4.1235 0.1878 2.2127 9 6 5.5751 0.2202 2.2293 10 6 6.0525 1.0882 3.3953 11 6 5.4711 2.4773 3.4523 12 1 5.2681 2.9391 4.4072 13 6 5.1981 3.1587 2.2851 14 7 5.5761 2.6596 1.1285 15 14 4.2916 4.7909 2.3466 16 1 5.2735 5.8980 2.4711 17 1 3.5030 4.9663 1.1007 18 1 3.3778 4.8057 3.5172 19 6 7.4972 0.9072 3.8655 20 6 6.3416 0.3884 4.7249 21 6 1.6379 -2.1725 1.1908 22 8 2.4844 -3.0346 1.1982 23 8 0.3394 -2.5071 1.1305 24 6 0.0257 -3.9238 1.0760 25 6 0.5708 -4.6154 2.3272 26 6 -1.4919 -4.1079 1.0124 27 6 0.6673 -4.5407 -0.1683 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0120 33 1 1.6669 1.9599 -0.8839 34 1 1.6864 1.9529 0.8959 35 1 5.9597 -0.7926 2.3490 36 1 5.9400 0.6390 1.2915 37 1 5.4499 3.1721 0.3147 38 1 8.1077 0.1701 3.3438 39 1 8.0269 1.7929 4.2163 40 1 6.1116 0.9329 5.6407 41 1 6.1913 -0.6903 4.7690 42 1 0.1137 -4.1758 3.2137 43 1 0.3349 -5.6788 2.2865 44 1 1.6519 -4.4841 2.3730 45 1 -1.8806 -3.6151 0.1212 46 1 -1.7275 -5.1714 0.9720 47 1 -1.9488 -3.6684 1.8991 48 1 1.7485 -4.4095 -0.1225 49 1 0.4314 -5.6041 -0.2094 50 1 0.2789 -4.0481 -1.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842732158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:03 Heat of formation + Delta-G solvation = -157.406012 kcal Electronic energy + Delta-G solvation = -30357.612556 eV Core-core repulsion = 26351.069528 eV Total energy + Delta-G solvation = -4006.543028 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.16397 -39.54873 -37.25563 -36.56181 -35.90239 -34.93191 -33.99246 -32.16770 -29.32464 -27.58603 -27.52983 -27.12892 -26.37968 -25.33327 -22.98987 -21.33551 -21.09228 -20.10639 -19.23458 -19.14569 -17.61524 -16.75632 -16.59951 -16.41626 -16.01441 -15.33898 -15.20166 -14.66745 -14.55615 -14.39891 -13.84676 -13.69251 -13.56498 -13.09834 -12.95959 -12.67260 -12.58718 -12.33707 -12.11050 -12.04628 -11.97825 -11.92958 -11.84595 -11.63521 -11.47403 -11.38496 -11.04948 -10.97793 -10.80682 -10.77046 -10.64718 -10.50260 -10.35982 -10.33141 -9.88429 -9.86788 -9.44357 -9.38927 -9.05861 -8.77761 -8.14899 -6.02709 -4.09873 2.25243 2.31469 3.03496 3.25278 3.33178 3.37309 3.59888 4.35364 4.46486 4.56050 4.59840 4.74534 4.77939 4.92173 5.00640 5.27467 5.29751 5.37215 5.40670 5.42838 5.51921 5.52896 5.59732 5.67978 5.69574 5.70639 5.81671 5.84079 6.02010 6.05826 6.11958 6.13856 6.17375 6.22405 6.26226 6.41069 6.47639 6.50587 6.63293 6.65278 6.69028 6.82331 6.98573 7.25384 7.42851 7.56082 7.85242 7.89850 8.33396 8.65073 8.86424 9.50650 10.96890 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.004092 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.648905 B = 6841.183083 C = 7900.272525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.076 4.076 3 C -0.154 4.154 4 C -0.077 4.077 5 H 0.133 0.867 6 C 0.471 3.529 7 O -0.500 6.500 8 O -0.318 6.318 9 C 0.119 3.881 10 C 0.048 3.952 11 C -0.481 4.481 12 H 0.061 0.939 13 C 0.078 3.922 14 N -0.882 5.882 15 Si 0.891 3.109 16 H -0.282 1.282 17 H -0.283 1.283 18 H -0.272 1.272 19 C -0.193 4.193 20 C -0.210 4.210 21 C 0.478 3.522 22 O -0.478 6.478 23 O -0.341 6.341 24 C 0.114 3.886 25 C -0.184 4.184 26 C -0.139 4.139 27 C -0.184 4.184 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.025 0.975 36 H 0.115 0.885 37 H 0.262 0.738 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.066 0.934 46 H 0.076 0.924 47 H 0.067 0.933 48 H 0.086 0.914 49 H 0.069 0.931 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.006 -9.797 -2.218 17.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.094 4.094 3 C -0.211 4.211 4 C -0.097 4.097 5 H 0.151 0.849 6 C 0.311 3.689 7 O -0.388 6.388 8 O -0.232 6.232 9 C 0.046 3.954 10 C 0.048 3.952 11 C -0.518 4.518 12 H 0.079 0.921 13 C -0.125 4.125 14 N -0.520 5.520 15 Si 0.719 3.281 16 H -0.208 1.208 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.231 4.231 20 C -0.248 4.248 21 C 0.320 3.680 22 O -0.363 6.363 23 O -0.259 6.259 24 C 0.078 3.922 25 C -0.242 4.242 26 C -0.196 4.196 27 C -0.241 4.241 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.133 0.867 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.104 0.896 49 H 0.088 0.912 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.586 -10.250 -2.635 17.221 hybrid contribution -0.179 0.685 0.062 0.710 sum -13.765 -9.565 -2.573 16.958 Atomic orbital electron populations 1.22054 0.93359 1.03422 1.02255 1.21002 0.96918 0.97146 0.94366 1.21929 1.03200 0.93626 1.02340 1.20868 0.92832 0.91227 1.04744 0.84902 1.22185 0.89564 0.77580 0.79548 1.90623 1.64923 1.42901 1.40394 1.86471 1.26269 1.58271 1.52179 1.22848 0.73620 0.95608 1.03300 1.18903 0.92848 0.94773 0.88700 1.20428 1.41031 0.97614 0.92703 0.92064 1.24888 0.94706 0.97694 0.95186 1.69780 1.46853 1.37075 0.98261 0.86595 0.80178 0.83576 0.77770 1.20774 1.20854 1.19680 1.22973 0.92974 1.01692 1.05497 1.22971 1.06383 0.98181 0.97247 1.22757 0.80989 0.91223 0.73051 1.90657 1.51662 1.50681 1.43295 1.86591 1.26911 1.28522 1.83875 1.22200 0.96042 0.77536 0.96426 1.22501 1.04226 1.00821 0.96613 1.21841 0.91938 1.02460 1.03351 1.22496 1.03987 1.01108 0.96532 0.92161 0.92054 0.90576 0.90145 0.90697 0.92133 0.91719 0.95668 0.86700 0.92756 0.91472 0.89784 0.90319 0.91344 0.91889 0.91145 0.89727 0.91455 0.90496 0.91418 0.89563 0.91203 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.83 37.16 0.33 -1.43 16 2 C -0.08 -1.11 2.49 -90.62 -0.23 -1.34 16 3 C -0.15 -2.50 8.86 37.16 0.33 -2.18 16 4 C -0.08 -1.28 2.32 -92.92 -0.22 -1.50 16 5 H 0.13 1.99 8.14 -51.92 -0.42 1.57 16 6 C 0.47 10.15 5.01 36.01 0.18 10.33 16 7 O -0.50 -12.04 15.44 -25.71 -0.40 -12.44 16 8 O -0.32 -7.55 9.83 -39.25 -0.39 -7.94 16 9 C 0.12 2.96 4.49 37.16 0.17 3.13 16 10 C 0.05 1.20 2.15 -155.65 -0.34 0.86 16 11 C -0.48 -12.75 8.78 -34.44 -0.30 -13.06 16 12 H 0.06 1.62 7.82 -52.49 -0.41 1.21 16 13 C 0.08 2.03 5.20 -17.82 -0.09 1.94 16 14 N -0.88 -23.47 10.61 55.43 0.59 -22.88 16 15 Si 0.89 20.27 29.55 -169.99 -5.02 15.25 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.19 -4.33 9.96 -26.69 -0.27 -4.60 16 20 C -0.21 -4.61 9.92 -26.69 -0.26 -4.88 16 21 C 0.48 7.72 6.47 36.01 0.23 7.95 16 22 O -0.48 -8.98 10.69 -25.71 -0.27 -9.26 16 23 O -0.34 -4.44 7.02 -39.24 -0.28 -4.71 16 24 C 0.11 1.25 1.13 -90.62 -0.10 1.15 16 25 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 26 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 27 C -0.18 -2.05 8.37 37.15 0.31 -1.74 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.85 5.45 -51.93 -0.28 0.56 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.07 1.50 7.11 -51.93 -0.37 1.14 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.03 0.61 7.98 -51.93 -0.41 0.20 16 36 H 0.12 3.12 6.01 -51.93 -0.31 2.81 16 37 H 0.26 6.71 8.32 -40.82 -0.34 6.37 16 38 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 40 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.18 5.89 -51.93 -0.31 0.87 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.09 1.23 5.89 -51.93 -0.31 0.92 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -29.76 398.56 -8.10 -37.86 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.72 Total: 5.96 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 0.38 Total: -7.84 kcal Atomic # 7 Polarization: -23.47 SS G_CDS: 0.59 Total: -22.88 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -1.33 Total: -34.35 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.76 -8.10 -37.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842732158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.547 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds