Wall clock time and date at job start Tue Mar 31 2020 15:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46880 * 2 1 4 4 C 1.52995 * 109.47388 * 120.00159 * 2 1 3 5 5 H 1.09008 * 109.47388 * 304.83322 * 4 2 1 6 6 C 1.50700 * 109.47316 * 184.83556 * 4 2 1 7 7 O 1.20824 * 119.99780 * 287.33454 * 6 4 2 8 8 O 1.34227 * 119.99999 * 107.33580 * 6 4 2 9 9 C 1.45203 * 116.99672 * 179.00376 * 8 6 4 10 10 C 1.53004 * 109.46827 * 185.08181 * 9 8 6 11 11 C 1.50698 * 115.55367 * 306.71283 * 10 9 8 12 12 H 1.07994 * 120.00699 * 145.27068 * 11 10 9 13 13 C 1.37881 * 119.99433 * 325.27653 * 11 10 9 14 14 N 1.31508 * 120.00349 * 352.67463 * 13 11 10 15 15 Si 1.86803 * 119.99666 * 172.67924 * 13 11 10 16 16 H 1.48503 * 109.47088 * 89.99520 * 15 13 11 17 17 H 1.48496 * 109.47098 * 209.99913 * 15 13 11 18 18 H 1.48506 * 109.47178 * 329.99938 * 15 13 11 19 19 C 1.53007 * 117.49925 * 161.03991 * 10 9 8 20 20 C 1.53004 * 117.49924 * 92.38154 * 10 9 8 21 21 C 1.50704 * 109.47309 * 64.83217 * 4 2 1 22 22 O 1.20826 * 119.99475 * 119.99927 * 21 4 2 23 23 O 1.34225 * 119.99966 * 300.00492 * 21 4 2 24 24 C 1.45200 * 116.99813 * 179.97438 * 23 21 4 25 25 C 1.53001 * 109.47213 * 60.00097 * 24 23 21 26 26 C 1.53006 * 109.46767 * 179.97438 * 24 23 21 27 27 C 1.52993 * 109.47285 * 299.99621 * 24 23 21 28 28 H 1.08994 * 109.47316 * 60.00324 * 1 2 3 29 29 H 1.08997 * 109.46967 * 299.99538 * 1 2 3 30 30 H 1.09003 * 109.46790 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47233 * 240.00035 * 2 1 3 32 32 H 1.09000 * 109.47032 * 180.66642 * 3 2 1 33 33 H 1.08999 * 109.47333 * 300.66644 * 3 2 1 34 34 H 1.08999 * 109.46898 * 60.66960 * 3 2 1 35 35 H 1.08994 * 109.47281 * 305.07983 * 9 8 6 36 36 H 1.08993 * 109.47373 * 65.08817 * 9 8 6 37 37 H 0.96998 * 120.00110 * 185.05548 * 14 13 11 38 38 H 1.09003 * 117.49558 * 0.02562 * 19 10 9 39 39 H 1.08997 * 117.49438 * 145.01927 * 19 10 9 40 40 H 1.08999 * 117.50100 * 214.98145 * 20 10 9 41 41 H 1.08999 * 117.49781 * 359.97438 * 20 10 9 42 42 H 1.08999 * 109.47230 * 59.99584 * 25 24 23 43 43 H 1.09000 * 109.47272 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.46786 * 300.00267 * 25 24 23 45 45 H 1.09000 * 109.46627 * 60.00569 * 26 24 23 46 46 H 1.09000 * 109.46834 * 180.02562 * 26 24 23 47 47 H 1.08994 * 109.47789 * 300.00087 * 26 24 23 48 48 H 1.09007 * 109.46727 * 60.00259 * 27 24 23 49 49 H 1.09000 * 109.47160 * 180.02562 * 27 24 23 50 50 H 1.08995 * 109.47374 * 300.00127 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6078 -0.2599 2.1372 6 6 3.5423 -0.6184 1.3105 7 8 4.2235 -1.2616 0.5476 8 8 4.1235 0.1878 2.2127 9 6 5.5751 0.2202 2.2293 10 6 6.0525 1.0882 3.3953 11 6 5.4711 2.4773 3.4523 12 1 5.2681 2.9391 4.4072 13 6 5.1981 3.1587 2.2851 14 7 5.5761 2.6596 1.1285 15 14 4.2916 4.7909 2.3466 16 1 5.2735 5.8980 2.4711 17 1 3.5030 4.9663 1.1007 18 1 3.3778 4.8057 3.5172 19 6 7.4972 0.9072 3.8655 20 6 6.3416 0.3884 4.7249 21 6 1.6379 -2.1725 1.1908 22 8 2.4844 -3.0346 1.1982 23 8 0.3394 -2.5071 1.1305 24 6 0.0257 -3.9238 1.0760 25 6 0.5708 -4.6154 2.3272 26 6 -1.4919 -4.1079 1.0124 27 6 0.6673 -4.5407 -0.1683 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1299 1.4426 -0.0120 33 1 1.6669 1.9599 -0.8839 34 1 1.6864 1.9529 0.8959 35 1 5.9597 -0.7926 2.3490 36 1 5.9400 0.6390 1.2915 37 1 5.4499 3.1721 0.3147 38 1 8.1077 0.1701 3.3438 39 1 8.0269 1.7929 4.2163 40 1 6.1116 0.9329 5.6407 41 1 6.1913 -0.6903 4.7690 42 1 0.1137 -4.1758 3.2137 43 1 0.3349 -5.6788 2.2865 44 1 1.6519 -4.4841 2.3730 45 1 -1.8806 -3.6151 0.1212 46 1 -1.7275 -5.1714 0.9720 47 1 -1.9488 -3.6684 1.8991 48 1 1.7485 -4.4095 -0.1225 49 1 0.4314 -5.6041 -0.2094 50 1 0.2789 -4.0481 -1.0596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842732158.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:02 Heat of formation + Delta-G solvation = -170.366520 kcal Electronic energy + Delta-G solvation = -30358.174566 eV Core-core repulsion = 26351.069528 eV Total energy + Delta-G solvation = -4007.105037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.45355 -41.15040 -38.80656 -38.01707 -37.23736 -36.75845 -34.94892 -34.15420 -30.69482 -28.54806 -28.39504 -28.27748 -27.96753 -27.31235 -24.26158 -23.05377 -22.54654 -21.30621 -21.10449 -20.49487 -19.04490 -18.49204 -18.13125 -17.63377 -17.34761 -16.98831 -16.86456 -16.45394 -15.71126 -15.56434 -15.37231 -15.08286 -14.65636 -14.58292 -14.33682 -13.87449 -13.79063 -13.59918 -13.37777 -13.31660 -13.14504 -13.01857 -12.95141 -12.88386 -12.85412 -12.73767 -12.63651 -12.40917 -12.30004 -12.21245 -12.14778 -11.86648 -11.78452 -11.68463 -11.38372 -11.35069 -11.21275 -11.04478 -11.01029 -10.67416 -10.07895 -8.00116 -6.14175 0.96405 0.99335 1.42297 1.44491 1.47747 1.57186 2.08742 2.45909 3.03873 3.24161 3.52262 3.55861 3.70755 3.73032 3.79111 3.90459 3.95831 4.17230 4.19147 4.19625 4.35023 4.47557 4.55174 4.58036 4.59015 4.74836 4.75594 4.77111 4.81892 4.83993 4.87522 4.89122 4.90439 4.97491 5.06455 5.12629 5.14537 5.17394 5.25701 5.28184 5.32560 5.40377 5.42839 5.49425 5.50292 5.75945 5.85597 6.35290 6.64046 6.79262 6.92047 7.48599 8.97964 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.004092 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.648905 B = 6841.183083 C = 7900.272525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.069 4.069 3 C -0.150 4.150 4 C -0.075 4.075 5 H 0.153 0.847 6 C 0.467 3.533 7 O -0.533 6.533 8 O -0.328 6.328 9 C 0.130 3.870 10 C 0.013 3.987 11 C -0.501 4.501 12 H 0.056 0.944 13 C 0.041 3.959 14 N -0.901 5.901 15 Si 0.946 3.054 16 H -0.280 1.280 17 H -0.277 1.277 18 H -0.267 1.267 19 C -0.187 4.187 20 C -0.191 4.191 21 C 0.485 3.515 22 O -0.510 6.510 23 O -0.329 6.329 24 C 0.103 3.897 25 C -0.184 4.184 26 C -0.132 4.132 27 C -0.182 4.182 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.021 0.979 36 H 0.087 0.913 37 H 0.261 0.739 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.094 0.906 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.093 0.907 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.039 -9.983 -1.884 19.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.207 4.207 4 C -0.095 4.095 5 H 0.170 0.830 6 C 0.309 3.691 7 O -0.423 6.423 8 O -0.243 6.243 9 C 0.056 3.944 10 C 0.012 3.988 11 C -0.538 4.538 12 H 0.074 0.926 13 C -0.160 4.160 14 N -0.539 5.539 15 Si 0.771 3.229 16 H -0.206 1.206 17 H -0.202 1.202 18 H -0.192 1.192 19 C -0.225 4.225 20 C -0.228 4.228 21 C 0.327 3.673 22 O -0.397 6.397 23 O -0.246 6.246 24 C 0.068 3.932 25 C -0.241 4.241 26 C -0.189 4.189 27 C -0.240 4.240 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.094 0.906 46 H 0.118 0.882 47 H 0.093 0.907 48 H 0.068 0.932 49 H 0.112 0.888 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.642 -10.437 -2.290 19.776 hybrid contribution 0.780 0.662 -0.055 1.025 sum -15.861 -9.774 -2.345 18.778 Atomic orbital electron populations 1.22007 0.89923 1.04287 1.03858 1.21026 0.99479 0.95545 0.92716 1.21882 1.00215 0.95064 1.03525 1.21003 0.89066 0.92690 1.06749 0.82991 1.23115 0.91578 0.76124 0.78232 1.90592 1.66239 1.44026 1.41456 1.86471 1.25638 1.59122 1.53068 1.22547 0.74548 0.95038 1.02228 1.19031 0.94662 0.94752 0.90308 1.20617 1.41932 0.98569 0.92682 0.92615 1.25507 0.95173 1.00566 0.94773 1.69921 1.47432 1.37999 0.98572 0.85742 0.79163 0.79979 0.77980 1.20614 1.20224 1.19151 1.22984 0.92294 1.02041 1.05160 1.22980 1.04827 0.98787 0.96182 1.22562 0.81801 0.90429 0.72464 1.90673 1.52830 1.51388 1.44848 1.86584 1.24552 1.30365 1.83103 1.22622 0.98372 0.76028 0.96181 1.22490 1.01959 1.02558 0.97062 1.21869 0.88713 1.04211 1.04108 1.22475 1.01577 1.02892 0.97012 0.90200 0.90832 0.90015 0.91242 0.95204 0.89861 0.91553 0.96066 0.89513 0.92976 0.90439 0.89618 0.89391 0.90079 0.91222 0.88770 0.93153 0.90627 0.88211 0.90742 0.93217 0.88810 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.83 71.98 0.64 -2.23 16 2 C -0.07 -1.98 2.49 -10.79 -0.03 -2.00 16 3 C -0.15 -4.82 8.86 71.98 0.64 -4.18 16 4 C -0.08 -2.52 2.32 -12.29 -0.03 -2.55 16 5 H 0.15 4.43 8.14 -2.38 -0.02 4.41 16 6 C 0.47 20.91 5.01 71.24 0.36 21.27 16 7 O -0.53 -27.06 15.44 28.62 0.44 -26.62 16 8 O -0.33 -16.18 9.83 -51.39 -0.51 -16.68 16 9 C 0.13 6.71 4.49 71.98 0.32 7.04 16 10 C 0.01 0.65 2.15 -52.92 -0.11 0.54 16 11 C -0.50 -26.88 8.78 25.60 0.22 -26.66 16 12 H 0.06 2.97 7.82 -2.91 -0.02 2.94 16 13 C 0.04 2.14 5.20 84.66 0.44 2.58 16 14 N -0.90 -49.35 10.61 21.45 0.23 -49.13 16 15 Si 0.95 41.59 29.55 68.60 2.03 43.61 16 16 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 19 C -0.19 -8.36 9.96 30.62 0.30 -8.06 16 20 C -0.19 -8.23 9.92 30.62 0.30 -7.93 16 21 C 0.49 15.61 6.47 71.24 0.46 16.07 16 22 O -0.51 -19.82 10.69 28.62 0.31 -19.52 16 23 O -0.33 -8.01 7.02 -51.37 -0.36 -8.37 16 24 C 0.10 2.05 1.13 -10.79 -0.01 2.04 16 25 C -0.18 -3.81 8.37 71.98 0.60 -3.21 16 26 C -0.13 -1.57 8.85 71.98 0.64 -0.93 16 27 C -0.18 -3.82 8.37 71.98 0.60 -3.22 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.56 5.45 -2.39 -0.01 1.54 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.03 1.22 7.11 -2.39 -0.02 1.20 16 33 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.02 1.08 7.98 -2.39 -0.02 1.06 16 36 H 0.09 4.97 6.01 -2.39 -0.01 4.96 16 37 H 0.26 13.74 8.32 -92.71 -0.77 12.97 16 38 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 39 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 40 H 0.09 3.61 8.14 -2.39 -0.02 3.59 16 41 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 42 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.05 1.42 5.89 -2.39 -0.01 1.40 16 45 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.05 1.44 5.89 -2.38 -0.01 1.42 16 49 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -67.27 398.56 8.39 -58.88 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.90 Total: 29.25 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: 5.35 Total: -11.42 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.23 Total: -49.13 kcal Atomic # 8 Polarization: -71.07 SS G_CDS: -0.12 Total: -71.19 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -67.27 8.39 -58.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842732158.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.491 kcal (2) G-P(sol) polarization free energy of solvation -67.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds