Wall clock time and date at job start Tue Mar 31 2020 14:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00347 * 2 1 4 4 C 1.50698 * 109.47526 * 293.95942 * 3 2 1 5 5 H 1.07997 * 119.99591 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99753 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99907 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47372 * 59.99333 * 8 6 4 10 10 H 1.48496 * 109.47051 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46926 * 299.99436 * 8 6 4 12 12 C 1.46900 * 110.99958 * 123.95959 * 2 1 3 13 13 C 1.53002 * 109.47264 * 66.04197 * 12 2 1 14 14 H 1.09003 * 109.47132 * 305.00078 * 13 12 2 15 15 O 1.42898 * 109.47051 * 65.00105 * 13 12 2 16 16 C 1.53002 * 109.47097 * 185.00189 * 13 12 2 17 17 N 1.46900 * 109.46922 * 179.97438 * 16 13 12 18 18 C 1.46898 * 110.99589 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.46893 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47164 * 60.00204 * 19 18 17 21 21 O 1.42903 * 109.47171 * 299.99938 * 19 18 17 22 22 C 1.50707 * 109.47316 * 180.02562 * 19 18 17 23 23 C 1.38236 * 119.97519 * 84.72192 * 22 19 18 24 24 C 1.38205 * 120.02479 * 179.72616 * 23 22 19 25 25 C 1.38458 * 119.96933 * 0.52712 * 24 23 22 26 26 F 1.35100 * 120.02246 * 179.71875 * 25 24 23 27 27 C 1.38452 * 119.95361 * 359.75234 * 25 24 23 28 28 C 1.38202 * 119.97215 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.46747 * 296.04678 * 1 2 3 30 30 H 1.09005 * 109.47098 * 56.04033 * 1 2 3 31 31 H 1.08992 * 109.47196 * 176.04178 * 1 2 3 32 32 H 1.09001 * 109.46751 * 53.95726 * 3 2 1 33 33 H 1.09004 * 109.47138 * 173.95174 * 3 2 1 34 34 H 0.97002 * 119.99578 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47075 * 306.04245 * 12 2 1 36 36 H 1.09001 * 109.47136 * 186.04564 * 12 2 1 37 37 H 0.96703 * 114.00039 * 59.99881 * 15 13 12 38 38 H 1.09002 * 109.47300 * 59.99841 * 16 13 12 39 39 H 1.09003 * 109.47038 * 299.99946 * 16 13 12 40 40 H 1.00904 * 110.99777 * 56.04878 * 17 16 13 41 41 H 1.08999 * 109.47049 * 60.00398 * 18 17 16 42 42 H 1.08997 * 109.47646 * 300.00448 * 18 17 16 43 43 H 0.96700 * 114.00311 * 300.00378 * 21 19 18 44 44 H 1.08003 * 119.99293 * 359.97438 * 23 22 19 45 45 H 1.08000 * 120.01389 * 180.29605 * 24 23 22 46 46 H 1.08002 * 120.01828 * 179.97438 * 27 25 24 47 47 H 1.07999 * 119.98776 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2983 5 1 1.0746 1.5114 -2.0486 6 6 2.0278 3.3492 -1.5287 7 7 2.7131 4.0014 -0.6152 8 14 1.5840 4.1867 -3.1384 9 1 0.1068 4.2239 -3.2862 10 1 2.1161 5.5730 -3.1383 11 1 2.1757 3.4289 -4.2702 12 6 1.9954 -0.7661 1.1375 13 6 1.6314 -2.2427 0.9702 14 1 0.5530 -2.3389 0.8431 15 8 2.2954 -2.7696 -0.1802 16 6 2.0698 -3.0201 2.2129 17 7 1.7197 -4.4377 2.0525 18 6 2.1272 -5.2169 3.2292 19 6 1.7474 -6.6849 3.0252 20 1 2.2532 -7.0715 2.1405 21 8 0.3332 -6.7912 2.8500 22 6 2.1649 -7.4843 4.2327 23 6 1.3343 -7.5544 5.3355 24 6 1.7136 -8.2919 6.4411 25 6 2.9309 -8.9516 6.4481 26 9 3.3052 -9.6681 7.5305 27 6 3.7645 -8.8760 5.3452 28 6 3.3806 -8.1426 4.2386 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0251 -0.0709 32 1 1.5612 1.9272 0.8310 33 1 3.0798 1.3443 0.1083 34 1 2.9877 4.9176 -0.7772 35 1 1.5611 -0.3874 2.0627 36 1 3.0797 -0.6612 1.1756 37 1 3.2600 -2.7168 -0.1362 38 1 1.5633 -2.6181 3.0904 39 1 3.1481 -2.9239 2.3400 40 1 2.1249 -4.8171 1.2099 41 1 1.6217 -4.8300 4.1140 42 1 3.2060 -5.1362 3.3628 43 1 -0.1818 -6.4648 3.6006 44 1 0.3869 -7.0360 5.3316 45 1 1.0625 -8.3504 7.3008 46 1 4.7144 -9.3898 5.3497 47 1 4.0304 -8.0837 3.3780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843065004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:21 Heat of formation + Delta-G solvation = -115.078334 kcal Electronic energy + Delta-G solvation = -26647.327600 eV Core-core repulsion = 22551.452484 eV Total energy + Delta-G solvation = -4095.875116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.35237 -40.14586 -38.41980 -37.36605 -35.79627 -34.66373 -32.52546 -31.98110 -31.55230 -30.06330 -27.88365 -26.95390 -25.59280 -23.88498 -23.57512 -22.78309 -21.69842 -21.16671 -20.16900 -18.40612 -17.42993 -17.11065 -16.73755 -16.32794 -16.09342 -16.04184 -15.48621 -15.32781 -14.98423 -14.84737 -14.71747 -14.32062 -14.10642 -14.03184 -13.60285 -13.50732 -13.27990 -13.25391 -12.71029 -12.56371 -12.41762 -11.99056 -11.86342 -11.65176 -11.42113 -11.32892 -11.10831 -10.87455 -10.77068 -10.66628 -10.53542 -10.27288 -10.01468 -9.65495 -9.62669 -9.15648 -9.05644 -8.58912 -8.42722 -7.19139 -6.02157 -4.03116 0.56374 0.68594 2.98899 3.34967 3.38355 3.42098 3.65534 3.76830 4.06801 4.16824 4.30918 4.37776 4.45747 4.56498 4.65224 4.68932 4.76664 4.82790 4.95808 5.14823 5.25187 5.28339 5.31347 5.35521 5.41964 5.45719 5.51111 5.58873 5.64398 5.67947 5.72516 5.96109 6.05678 6.20959 6.33079 6.33533 6.41348 6.74507 6.79638 7.17080 7.27288 7.32828 7.33432 7.80733 7.94701 8.10417 8.21141 8.56151 9.04708 9.61031 11.08767 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035393 B = 0.001639 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.920435 B =17076.128381 C =17272.874114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.674 5.674 18 C 0.031 3.969 19 C 0.153 3.847 20 H 0.108 0.892 21 O -0.538 6.538 22 C -0.125 4.125 23 C -0.081 4.081 24 C -0.150 4.150 25 C 0.096 3.904 26 F -0.140 7.140 27 C -0.151 4.151 28 C -0.080 4.080 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.048 0.952 32 H -0.011 1.011 33 H 0.027 0.973 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.366 0.634 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.350 0.650 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.372 0.628 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 -25.950 14.813 29.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.123 0.877 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.307 5.307 18 C -0.099 4.099 19 C 0.093 3.907 20 H 0.126 0.874 21 O -0.343 6.343 22 C -0.126 4.126 23 C -0.099 4.099 24 C -0.169 4.169 25 C 0.077 3.923 26 F -0.119 7.119 27 C -0.170 4.170 28 C -0.099 4.099 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.211 0.789 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.169 0.831 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.220 0.780 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.240 -26.284 13.903 29.735 hybrid contribution 1.155 1.230 1.032 1.978 sum 0.915 -25.054 14.936 29.182 Atomic orbital electron populations 1.22264 0.88923 0.99695 1.00403 1.62023 1.06894 1.17389 1.39083 1.19738 0.95216 0.81653 0.96624 1.21138 1.34748 0.96874 1.01692 0.91816 1.24997 0.95316 0.97351 0.97043 1.69951 1.38466 1.11487 1.34152 0.86537 0.78713 0.78241 0.83777 1.20273 1.21409 1.20124 1.22712 1.00341 0.93915 0.93498 1.21995 0.98373 0.90639 0.83546 0.87736 1.86624 1.22727 1.83801 1.41727 1.22705 0.98437 0.88927 1.00165 1.60272 1.64194 1.01759 1.04428 1.22661 0.98789 0.93325 0.95120 1.20765 0.82955 0.92258 0.94715 0.87396 1.86681 1.15623 1.86259 1.45759 1.20682 0.95415 0.99638 0.96877 1.20772 0.99596 0.97722 0.91825 1.21147 0.95931 0.99378 1.00398 1.17769 0.94939 0.95072 0.84503 1.91513 1.91500 1.75863 1.52991 1.21172 1.00697 1.02058 0.93054 1.20887 0.95711 0.95348 0.97905 0.97327 0.90686 0.93314 0.99319 0.95445 0.92921 0.95372 0.91361 0.78855 0.90434 0.95078 0.83083 0.90635 0.94327 0.77979 0.84914 0.84509 0.84518 0.84723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 9.14 60.06 0.55 1.26 16 2 N -0.53 -11.47 4.70 -244.37 -1.15 -12.62 16 3 C 0.19 5.05 4.72 -4.98 -0.02 5.03 16 4 C -0.51 -14.38 8.46 -34.44 -0.29 -14.67 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.03 0.43 4.60 -3.82 -0.02 0.41 16 13 C 0.11 1.60 3.19 -26.73 -0.09 1.51 16 14 H 0.10 1.61 6.34 -51.93 -0.33 1.28 16 15 O -0.55 -8.02 12.62 -35.23 -0.44 -8.47 16 16 C 0.03 0.30 5.39 -3.82 -0.02 0.28 16 17 N -0.67 -6.63 6.37 -113.78 -0.72 -7.36 16 18 C 0.03 0.23 5.33 -3.82 -0.02 0.21 16 19 C 0.15 1.07 3.42 -27.88 -0.10 0.98 16 20 H 0.11 0.75 8.05 -51.93 -0.42 0.33 16 21 O -0.54 -4.58 13.00 -35.23 -0.46 -5.04 16 22 C -0.13 -0.81 5.00 -104.62 -0.52 -1.34 16 23 C -0.08 -0.49 9.32 -39.59 -0.37 -0.85 16 24 C -0.15 -0.98 10.03 -39.51 -0.40 -1.37 16 25 C 0.10 0.73 7.30 -39.42 -0.29 0.45 16 26 F -0.14 -1.21 17.27 2.25 0.04 -1.17 16 27 C -0.15 -0.99 10.03 -39.52 -0.40 -1.39 16 28 C -0.08 -0.49 9.68 -39.59 -0.38 -0.87 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 31 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 36 H 0.07 1.15 7.93 -51.93 -0.41 0.73 16 37 H 0.37 4.26 9.05 45.56 0.41 4.67 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.35 3.52 8.12 -39.29 -0.32 3.20 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.37 2.06 7.39 45.56 0.34 2.39 16 44 H 0.13 0.51 6.62 -52.48 -0.35 0.17 16 45 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 LS Contribution 390.29 15.07 5.88 5.88 Total: -1.00 -33.06 390.29 -9.50 -42.57 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.90 Total: 4.45 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.46 Total: -8.92 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -1.14 Total: -46.10 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.90 Total: -13.50 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.06 -9.50 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843065004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.513 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds