Wall clock time and date at job start Tue Mar 31 2020 14:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46897 * 111.00347 * 2 1 4 4 C 1.50698 * 109.47526 * 293.95942 * 3 2 1 5 5 H 1.07997 * 119.99591 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00120 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99753 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99907 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47372 * 59.99333 * 8 6 4 10 10 H 1.48496 * 109.47051 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.46926 * 299.99436 * 8 6 4 12 12 C 1.46900 * 110.99958 * 123.95959 * 2 1 3 13 13 C 1.53002 * 109.47264 * 66.04197 * 12 2 1 14 14 H 1.09003 * 109.47132 * 305.00078 * 13 12 2 15 15 O 1.42898 * 109.47051 * 65.00105 * 13 12 2 16 16 C 1.53002 * 109.47097 * 185.00189 * 13 12 2 17 17 N 1.46900 * 109.46922 * 179.97438 * 16 13 12 18 18 C 1.46898 * 110.99589 * 179.97438 * 17 16 13 19 19 C 1.53001 * 109.46893 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47164 * 60.00204 * 19 18 17 21 21 O 1.42903 * 109.47171 * 299.99938 * 19 18 17 22 22 C 1.50707 * 109.47316 * 180.02562 * 19 18 17 23 23 C 1.38236 * 119.97519 * 84.72192 * 22 19 18 24 24 C 1.38205 * 120.02479 * 179.72616 * 23 22 19 25 25 C 1.38458 * 119.96933 * 0.52712 * 24 23 22 26 26 F 1.35100 * 120.02246 * 179.71875 * 25 24 23 27 27 C 1.38452 * 119.95361 * 359.75234 * 25 24 23 28 28 C 1.38202 * 119.97215 * 359.97438 * 27 25 24 29 29 H 1.09001 * 109.46747 * 296.04678 * 1 2 3 30 30 H 1.09005 * 109.47098 * 56.04033 * 1 2 3 31 31 H 1.08992 * 109.47196 * 176.04178 * 1 2 3 32 32 H 1.09001 * 109.46751 * 53.95726 * 3 2 1 33 33 H 1.09004 * 109.47138 * 173.95174 * 3 2 1 34 34 H 0.97002 * 119.99578 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47075 * 306.04245 * 12 2 1 36 36 H 1.09001 * 109.47136 * 186.04564 * 12 2 1 37 37 H 0.96703 * 114.00039 * 59.99881 * 15 13 12 38 38 H 1.09002 * 109.47300 * 59.99841 * 16 13 12 39 39 H 1.09003 * 109.47038 * 299.99946 * 16 13 12 40 40 H 1.00904 * 110.99777 * 56.04878 * 17 16 13 41 41 H 1.08999 * 109.47049 * 60.00398 * 18 17 16 42 42 H 1.08997 * 109.47646 * 300.00448 * 18 17 16 43 43 H 0.96700 * 114.00311 * 300.00378 * 21 19 18 44 44 H 1.08003 * 119.99293 * 359.97438 * 23 22 19 45 45 H 1.08000 * 120.01389 * 180.29605 * 24 23 22 46 46 H 1.08002 * 120.01828 * 179.97438 * 27 25 24 47 47 H 1.07999 * 119.98776 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0472 -1.2983 5 1 1.0746 1.5114 -2.0486 6 6 2.0278 3.3492 -1.5287 7 7 2.7131 4.0014 -0.6152 8 14 1.5840 4.1867 -3.1384 9 1 0.1068 4.2239 -3.2862 10 1 2.1161 5.5730 -3.1383 11 1 2.1757 3.4289 -4.2702 12 6 1.9954 -0.7661 1.1375 13 6 1.6314 -2.2427 0.9702 14 1 0.5530 -2.3389 0.8431 15 8 2.2954 -2.7696 -0.1802 16 6 2.0698 -3.0201 2.2129 17 7 1.7197 -4.4377 2.0525 18 6 2.1272 -5.2169 3.2292 19 6 1.7474 -6.6849 3.0252 20 1 2.2532 -7.0715 2.1405 21 8 0.3332 -6.7912 2.8500 22 6 2.1649 -7.4843 4.2327 23 6 1.3343 -7.5544 5.3355 24 6 1.7136 -8.2919 6.4411 25 6 2.9309 -8.9516 6.4481 26 9 3.3052 -9.6681 7.5305 27 6 3.7645 -8.8760 5.3452 28 6 3.3806 -8.1426 4.2386 29 1 -0.3633 0.4513 0.9233 30 1 -0.3633 0.5741 -0.8524 31 1 -0.3633 -1.0251 -0.0709 32 1 1.5612 1.9272 0.8310 33 1 3.0798 1.3443 0.1083 34 1 2.9877 4.9176 -0.7772 35 1 1.5611 -0.3874 2.0627 36 1 3.0797 -0.6612 1.1756 37 1 3.2600 -2.7168 -0.1362 38 1 1.5633 -2.6181 3.0904 39 1 3.1481 -2.9239 2.3400 40 1 2.1249 -4.8171 1.2099 41 1 1.6217 -4.8300 4.1140 42 1 3.2060 -5.1362 3.3628 43 1 -0.1818 -6.4648 3.6006 44 1 0.3869 -7.0360 5.3316 45 1 1.0625 -8.3504 7.3008 46 1 4.7144 -9.3898 5.3497 47 1 4.0304 -8.0837 3.3780 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843065004.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:20 Heat of formation + Delta-G solvation = -142.148848 kcal Electronic energy + Delta-G solvation = -26648.501465 eV Core-core repulsion = 22551.452484 eV Total energy + Delta-G solvation = -4097.048981 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.93772 -40.65008 -39.58438 -38.09955 -37.20308 -35.55194 -34.61778 -32.55449 -32.03477 -31.20097 -29.28479 -28.41588 -26.94902 -25.13252 -24.11518 -23.63376 -22.66389 -22.07794 -21.73010 -18.90953 -18.56521 -18.04468 -17.69168 -17.44330 -17.19809 -16.71472 -16.63582 -16.33026 -16.05849 -15.91837 -15.73219 -15.37134 -15.36359 -14.81047 -14.62862 -14.50092 -14.09397 -13.95825 -13.85410 -13.75426 -13.36059 -13.23895 -13.10866 -12.86781 -12.66679 -12.55619 -12.49384 -12.37926 -12.15058 -11.99540 -11.90372 -11.61368 -11.43132 -11.12998 -10.66135 -10.61126 -10.10546 -9.60275 -9.32252 -8.95332 -8.20486 -6.30359 0.06076 0.23721 1.41601 1.44786 1.52776 2.40575 2.50203 2.89999 3.11864 3.25494 3.38669 3.56877 3.70771 3.73460 3.80527 3.91350 4.01246 4.08555 4.16270 4.19446 4.29620 4.32499 4.39222 4.47415 4.57486 4.69762 4.70441 4.74634 4.82002 4.86756 4.94716 4.97111 5.07442 5.12873 5.17195 5.18555 5.21604 5.33327 5.48860 5.64950 5.86441 5.99269 6.06293 6.32736 6.44111 6.64680 6.85473 6.86769 6.98127 7.39308 8.90163 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035393 B = 0.001639 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.920435 B =17076.128381 C =17272.874114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.093 0.907 15 O -0.560 6.560 16 C 0.040 3.960 17 N -0.682 5.682 18 C 0.035 3.965 19 C 0.161 3.839 20 H 0.109 0.891 21 O -0.557 6.557 22 C -0.129 4.129 23 C -0.084 4.084 24 C -0.156 4.156 25 C 0.074 3.926 26 F -0.151 7.151 27 C -0.157 4.157 28 C -0.084 4.084 29 H 0.011 0.989 30 H 0.054 0.946 31 H 0.076 0.924 32 H -0.039 1.039 33 H 0.004 0.996 34 H 0.264 0.736 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.379 0.621 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.349 0.651 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.384 0.616 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.232 -26.809 14.441 30.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.105 4.105 13 C 0.069 3.931 14 H 0.111 0.889 15 O -0.366 6.366 16 C -0.090 4.090 17 N -0.314 5.314 18 C -0.094 4.094 19 C 0.101 3.899 20 H 0.127 0.873 21 O -0.364 6.364 22 C -0.130 4.130 23 C -0.102 4.102 24 C -0.174 4.174 25 C 0.055 3.945 26 F -0.130 7.130 27 C -0.176 4.176 28 C -0.102 4.102 29 H 0.030 0.970 30 H 0.073 0.927 31 H 0.095 0.905 32 H -0.021 1.021 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.168 0.832 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.233 0.767 44 H 0.171 0.829 45 H 0.167 0.833 46 H 0.167 0.833 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.596 -27.169 13.550 30.367 hybrid contribution 1.269 1.445 1.189 2.261 sum 0.673 -25.725 14.739 29.656 Atomic orbital electron populations 1.22229 0.87879 1.01085 0.99626 1.61936 1.07944 1.14850 1.41702 1.19394 0.93644 0.83972 0.94884 1.21450 1.34901 0.97536 1.02442 0.92104 1.25912 0.95005 0.98027 1.00728 1.70073 1.39319 1.11900 1.36183 0.85432 0.78815 0.77151 0.79195 1.19301 1.20744 1.19388 1.22841 1.00202 0.95439 0.92020 1.21784 0.97718 0.88708 0.84923 0.88881 1.86584 1.24049 1.83645 1.42296 1.22486 0.99018 0.89246 0.98275 1.60247 1.64561 1.01320 1.05256 1.22661 0.99232 0.93292 0.94210 1.20684 0.82392 0.91892 0.94931 0.87343 1.86651 1.16436 1.86496 1.46842 1.20717 0.95708 0.99750 0.96813 1.21029 1.00316 0.97459 0.91360 1.21353 0.95795 0.99181 1.01113 1.18082 0.95882 0.95861 0.84704 1.91480 1.91682 1.76264 1.53581 1.21371 1.01146 1.02177 0.92888 1.21128 0.95905 0.94853 0.98295 0.97035 0.92712 0.90537 1.02142 0.97758 0.92683 0.94930 0.91379 0.77335 0.89979 0.94037 0.83211 0.90225 0.93613 0.76670 0.82936 0.83317 0.83348 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.14 127.69 1.17 2.75 16 2 N -0.54 -23.44 4.70 -927.05 -4.36 -27.79 16 3 C 0.21 11.15 4.72 85.56 0.40 11.55 16 4 C -0.53 -30.23 8.46 25.60 0.22 -30.01 16 5 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 6 C 0.00 0.07 5.46 84.66 0.46 0.53 16 7 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 8 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 C 0.02 0.81 4.60 86.30 0.40 1.21 16 13 C 0.13 3.39 3.19 30.60 0.10 3.49 16 14 H 0.09 2.70 6.34 -2.39 -0.02 2.68 16 15 O -0.56 -15.60 12.62 -148.98 -1.88 -17.49 16 16 C 0.04 0.77 5.39 86.30 0.47 1.24 16 17 N -0.68 -11.88 6.37 -513.89 -3.27 -15.16 16 18 C 0.04 0.45 5.33 86.30 0.46 0.91 16 19 C 0.16 1.92 3.42 29.85 0.10 2.02 16 20 H 0.11 1.28 8.05 -2.39 -0.02 1.26 16 21 O -0.56 -8.39 13.00 -148.98 -1.94 -10.33 16 22 C -0.13 -1.44 5.00 -19.86 -0.10 -1.54 16 23 C -0.08 -0.86 9.32 22.26 0.21 -0.65 16 24 C -0.16 -1.86 10.03 22.31 0.22 -1.64 16 25 C 0.07 1.08 7.30 22.37 0.16 1.24 16 26 F -0.15 -2.61 17.27 44.97 0.78 -1.83 16 27 C -0.16 -1.90 10.03 22.31 0.22 -1.68 16 28 C -0.08 -0.88 9.68 22.26 0.22 -0.67 16 29 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 2.36 6.76 -2.38 -0.02 2.34 16 31 H 0.08 2.58 6.37 -2.39 -0.02 2.56 16 32 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 33 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16 34 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 35 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 36 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 37 H 0.38 8.24 9.05 -74.06 -0.67 7.57 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.35 6.28 8.12 -89.69 -0.73 5.55 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.38 3.44 7.39 -74.06 -0.55 2.89 16 44 H 0.15 0.84 6.62 -2.91 -0.02 0.82 16 45 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 47 H 0.15 0.97 8.06 -2.91 -0.02 0.94 16 Total: -1.00 -70.85 390.29 -4.60 -75.45 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.95 Total: 17.81 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.71 Total: -11.23 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -7.35 Total: -99.05 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -3.82 Total: -27.81 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -70.85 -4.60 -75.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843065004.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.702 kcal (2) G-P(sol) polarization free energy of solvation -70.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds