Wall clock time and date at job start Tue Mar 31 2020 14:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 110.99992 * 2 1 4 4 C 1.50695 * 109.47163 * 66.04365 * 3 2 1 5 5 H 1.08001 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99878 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99861 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99883 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46893 * 89.99762 * 8 6 4 10 10 H 1.48499 * 109.46839 * 209.99781 * 8 6 4 11 11 H 1.48501 * 109.46931 * 330.00044 * 8 6 4 12 12 C 1.46896 * 111.00256 * 236.04286 * 2 1 3 13 13 C 1.52997 * 109.47114 * 293.95380 * 12 2 1 14 14 H 1.09001 * 109.46832 * 59.99999 * 13 12 2 15 15 O 1.42895 * 109.47503 * 299.99765 * 13 12 2 16 16 C 1.53006 * 109.47127 * 179.97438 * 13 12 2 17 17 N 1.46895 * 109.47221 * 185.00300 * 16 13 12 18 18 C 1.46896 * 111.00108 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47173 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.47711 * 305.00057 * 19 18 17 21 21 O 1.42900 * 109.47058 * 65.00274 * 19 18 17 22 22 C 1.50706 * 109.47423 * 184.99970 * 19 18 17 23 23 C 1.38245 * 119.97137 * 279.73049 * 22 19 18 24 24 C 1.38200 * 120.02165 * 179.76211 * 23 22 19 25 25 C 1.38463 * 119.97287 * 0.51090 * 24 23 22 26 26 F 1.35099 * 120.02141 * 179.76642 * 25 24 23 27 27 C 1.38451 * 119.94863 * 359.74156 * 25 24 23 28 28 C 1.38201 * 119.98004 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.47174 * 183.95746 * 1 2 3 30 30 H 1.08998 * 109.47389 * 303.95602 * 1 2 3 31 31 H 1.09008 * 109.47155 * 63.95597 * 1 2 3 32 32 H 1.08999 * 109.46856 * 186.04735 * 3 2 1 33 33 H 1.09001 * 109.46406 * 306.04373 * 3 2 1 34 34 H 0.97000 * 119.99813 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47267 * 173.95091 * 12 2 1 36 36 H 1.09004 * 109.47041 * 53.95496 * 12 2 1 37 37 H 0.96696 * 113.99976 * 300.00825 * 15 13 12 38 38 H 1.08997 * 109.47395 * 305.00572 * 16 13 12 39 39 H 1.09004 * 109.46579 * 64.99848 * 16 13 12 40 40 H 1.00910 * 110.99920 * 303.95616 * 17 16 13 41 41 H 1.09001 * 109.47414 * 300.00100 * 18 17 16 42 42 H 1.09003 * 109.46964 * 59.99930 * 18 17 16 43 43 H 0.96699 * 113.99995 * 59.99667 * 21 19 18 44 44 H 1.07998 * 119.99078 * 0.02562 * 23 22 19 45 45 H 1.08001 * 120.01261 * 180.25420 * 24 23 22 46 46 H 1.08007 * 120.01337 * 179.97438 * 27 25 24 47 47 H 1.07994 * 119.98890 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7110 4.0022 0.6144 8 14 1.5816 4.1874 3.1376 9 1 2.6582 3.9514 4.1328 10 1 1.4292 5.6469 2.9100 11 1 0.3038 3.6299 3.6490 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2427 16 6 2.1793 -3.0404 -2.1553 17 7 1.7288 -4.4351 -2.0569 18 6 2.2374 -5.2331 -3.1804 19 6 1.7489 -6.6765 -3.0431 20 1 2.0377 -7.0666 -2.0671 21 8 0.3259 -6.7117 -3.1681 22 6 2.3692 -7.5219 -4.1256 23 6 1.8401 -7.5062 -5.4026 24 6 2.4112 -8.2773 -6.3972 25 6 3.5070 -9.0739 -6.1116 26 9 4.0631 -9.8317 -7.0820 27 6 4.0328 -9.0928 -4.8310 28 6 3.4631 -8.3172 -3.8390 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3634 0.5740 0.8524 31 1 -0.3634 0.4512 -0.9234 32 1 3.0797 1.3444 -0.1083 33 1 1.5610 1.9273 -0.8310 34 1 2.9856 4.9183 0.7764 35 1 3.0797 -0.6611 -1.1755 36 1 1.5611 -0.3873 -2.0628 37 1 3.1652 -2.6770 0.2789 38 1 1.8145 -2.6055 -3.0858 39 1 3.2688 -3.0086 -2.1421 40 1 1.9995 -4.8411 -1.1736 41 1 1.8733 -4.8136 -4.1183 42 1 3.3273 -5.2166 -3.1739 43 1 -0.0030 -6.3784 -4.0141 44 1 0.9829 -6.8878 -5.6242 45 1 2.0002 -8.2617 -7.3959 46 1 4.8874 -9.7142 -4.6069 47 1 3.8734 -8.3316 -2.8402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843065005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:24 Heat of formation + Delta-G solvation = -115.689340 kcal Electronic energy + Delta-G solvation = -26639.380141 eV Core-core repulsion = 22543.478530 eV Total energy + Delta-G solvation = -4095.901611 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.35599 -40.14649 -38.40584 -37.37286 -35.78410 -34.67855 -32.52023 -31.96985 -31.57794 -30.06041 -27.87504 -26.94829 -25.56703 -23.91317 -23.58079 -22.78646 -21.70815 -21.17042 -20.15161 -18.39732 -17.45355 -17.10047 -16.73095 -16.33610 -16.08153 -16.04286 -15.48127 -15.29675 -15.00808 -14.86075 -14.72324 -14.28671 -14.10122 -14.00991 -13.60570 -13.49424 -13.32253 -13.26235 -12.71676 -12.56387 -12.42400 -11.98715 -11.87375 -11.66605 -11.43281 -11.32971 -11.11793 -10.87763 -10.74346 -10.63393 -10.53676 -10.27890 -9.99756 -9.65860 -9.62119 -9.15336 -9.06212 -8.60026 -8.42941 -7.18679 -6.02337 -4.03187 0.55873 0.68248 2.98615 3.33290 3.38868 3.43243 3.65675 3.76405 4.07393 4.15791 4.30479 4.37656 4.45719 4.55269 4.65123 4.67539 4.77524 4.82917 4.96679 5.15984 5.25072 5.28162 5.31134 5.35339 5.41402 5.45368 5.51649 5.58470 5.64076 5.67544 5.74320 5.95954 6.07016 6.22674 6.32724 6.33565 6.41507 6.74818 6.80627 7.15840 7.27618 7.31901 7.33666 7.81003 7.96047 8.10835 8.21535 8.56405 9.05049 9.61052 11.08643 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.001641 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.774568 B =17059.097431 C =17252.933226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.676 5.676 18 C 0.031 3.969 19 C 0.153 3.847 20 H 0.109 0.891 21 O -0.539 6.539 22 C -0.125 4.125 23 C -0.081 4.081 24 C -0.150 4.150 25 C 0.097 3.903 26 F -0.140 7.140 27 C -0.151 4.151 28 C -0.079 4.079 29 H 0.048 0.952 30 H 0.074 0.926 31 H 0.008 0.992 32 H 0.027 0.973 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.067 0.933 36 H 0.028 0.972 37 H 0.367 0.633 38 H 0.077 0.923 39 H 0.032 0.968 40 H 0.349 0.651 41 H 0.076 0.924 42 H 0.039 0.961 43 H 0.372 0.628 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -26.177 -14.336 29.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.105 4.105 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.102 4.102 17 N -0.308 5.308 18 C -0.098 4.098 19 C 0.093 3.907 20 H 0.126 0.874 21 O -0.344 6.344 22 C -0.127 4.127 23 C -0.099 4.099 24 C -0.169 4.169 25 C 0.078 3.922 26 F -0.119 7.119 27 C -0.170 4.170 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.026 0.974 32 H 0.045 0.955 33 H 0.007 0.993 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.213 0.787 38 H 0.096 0.904 39 H 0.050 0.950 40 H 0.168 0.832 41 H 0.094 0.906 42 H 0.057 0.943 43 H 0.220 0.780 44 H 0.150 0.850 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.390 -26.474 -13.526 29.732 hybrid contribution 1.349 1.158 -0.844 1.968 sum 1.739 -25.316 -14.370 29.162 Atomic orbital electron populations 1.22251 0.88884 0.99725 1.00345 1.62016 1.06939 1.17328 1.39030 1.19747 0.95207 0.81696 0.96638 1.21177 1.34675 0.96836 1.01671 0.91759 1.25000 0.95355 0.97351 0.97031 1.69959 1.38605 1.11453 1.34038 0.86479 0.78911 0.78341 0.83567 1.20635 1.21372 1.19819 1.22703 1.00323 0.93924 0.93558 1.21975 0.99079 0.90854 0.82670 0.87811 1.86606 1.24812 1.84849 1.38634 1.22710 0.97541 0.89314 1.00617 1.60307 1.63403 1.01804 1.05249 1.22666 0.97749 0.93294 0.96136 1.20770 0.81172 0.92152 0.96567 0.87369 1.86686 1.19074 1.87099 1.41540 1.20682 0.97122 0.99068 0.95787 1.20774 0.99347 0.98076 0.91739 1.21146 0.96402 0.98217 1.01112 1.17770 0.94748 0.93710 0.86011 1.91513 1.84523 1.73871 1.61946 1.21177 1.02017 1.02056 0.91742 1.20902 0.94883 0.94597 0.99373 0.93307 0.90725 0.97364 0.95460 0.99310 0.92980 0.91406 0.95345 0.78736 0.90423 0.95022 0.83159 0.90592 0.94317 0.78030 0.84953 0.84507 0.84505 0.84693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.14 60.06 0.55 1.28 16 2 N -0.53 -11.44 4.62 -244.37 -1.13 -12.57 16 3 C 0.19 5.04 4.72 -4.97 -0.02 5.01 16 4 C -0.50 -14.34 8.46 -34.44 -0.29 -14.63 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.02 0.42 4.62 -3.83 -0.02 0.40 16 13 C 0.11 1.59 3.07 -26.73 -0.08 1.51 16 14 H 0.10 1.59 6.55 -51.93 -0.34 1.25 16 15 O -0.55 -8.05 12.72 -35.23 -0.45 -8.50 16 16 C 0.03 0.30 5.36 -3.82 -0.02 0.28 16 17 N -0.68 -6.66 6.45 -113.78 -0.73 -7.39 16 18 C 0.03 0.24 5.30 -3.83 -0.02 0.22 16 19 C 0.15 1.08 3.39 -27.88 -0.09 0.98 16 20 H 0.11 0.76 8.00 -51.93 -0.42 0.34 16 21 O -0.54 -4.57 13.13 -35.23 -0.46 -5.03 16 22 C -0.13 -0.82 4.97 -104.61 -0.52 -1.34 16 23 C -0.08 -0.48 9.32 -39.59 -0.37 -0.85 16 24 C -0.15 -0.97 10.03 -39.51 -0.40 -1.37 16 25 C 0.10 0.74 7.30 -39.42 -0.29 0.45 16 26 F -0.14 -1.21 17.27 2.25 0.04 -1.17 16 27 C -0.15 -0.99 10.03 -39.52 -0.40 -1.39 16 28 C -0.08 -0.49 9.67 -39.59 -0.38 -0.87 16 29 H 0.05 0.86 6.47 -51.93 -0.34 0.53 16 30 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 31 H 0.01 0.16 8.14 -51.92 -0.42 -0.27 16 32 H 0.03 0.76 7.93 -51.93 -0.41 0.34 16 33 H -0.01 -0.30 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.07 1.14 7.93 -51.93 -0.41 0.72 16 36 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 37 H 0.37 4.37 9.05 45.56 0.41 4.78 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.35 3.50 8.29 -39.29 -0.33 3.18 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.37 2.00 7.49 45.56 0.34 2.34 16 44 H 0.13 0.49 6.77 -52.49 -0.36 0.14 16 45 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 47 H 0.14 0.58 8.04 -52.49 -0.42 0.16 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -33.06 390.96 -9.51 -42.56 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -5.93 Total: 4.41 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.45 Total: -8.87 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -1.13 Total: -46.08 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.91 Total: -13.53 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.06 -9.51 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843065005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.127 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds