Wall clock time and date at job start Tue Mar 31 2020 14:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 110.99992 * 2 1 4 4 C 1.50695 * 109.47163 * 66.04365 * 3 2 1 5 5 H 1.08001 * 119.99957 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99878 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99861 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99883 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46893 * 89.99762 * 8 6 4 10 10 H 1.48499 * 109.46839 * 209.99781 * 8 6 4 11 11 H 1.48501 * 109.46931 * 330.00044 * 8 6 4 12 12 C 1.46896 * 111.00256 * 236.04286 * 2 1 3 13 13 C 1.52997 * 109.47114 * 293.95380 * 12 2 1 14 14 H 1.09001 * 109.46832 * 59.99999 * 13 12 2 15 15 O 1.42895 * 109.47503 * 299.99765 * 13 12 2 16 16 C 1.53006 * 109.47127 * 179.97438 * 13 12 2 17 17 N 1.46895 * 109.47221 * 185.00300 * 16 13 12 18 18 C 1.46896 * 111.00108 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47173 * 179.97438 * 18 17 16 20 20 H 1.09002 * 109.47711 * 305.00057 * 19 18 17 21 21 O 1.42900 * 109.47058 * 65.00274 * 19 18 17 22 22 C 1.50706 * 109.47423 * 184.99970 * 19 18 17 23 23 C 1.38245 * 119.97137 * 279.73049 * 22 19 18 24 24 C 1.38200 * 120.02165 * 179.76211 * 23 22 19 25 25 C 1.38463 * 119.97287 * 0.51090 * 24 23 22 26 26 F 1.35099 * 120.02141 * 179.76642 * 25 24 23 27 27 C 1.38451 * 119.94863 * 359.74156 * 25 24 23 28 28 C 1.38201 * 119.98004 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.47174 * 183.95746 * 1 2 3 30 30 H 1.08998 * 109.47389 * 303.95602 * 1 2 3 31 31 H 1.09008 * 109.47155 * 63.95597 * 1 2 3 32 32 H 1.08999 * 109.46856 * 186.04735 * 3 2 1 33 33 H 1.09001 * 109.46406 * 306.04373 * 3 2 1 34 34 H 0.97000 * 119.99813 * 180.02562 * 7 6 4 35 35 H 1.09001 * 109.47267 * 173.95091 * 12 2 1 36 36 H 1.09004 * 109.47041 * 53.95496 * 12 2 1 37 37 H 0.96696 * 113.99976 * 300.00825 * 15 13 12 38 38 H 1.08997 * 109.47395 * 305.00572 * 16 13 12 39 39 H 1.09004 * 109.46579 * 64.99848 * 16 13 12 40 40 H 1.00910 * 110.99920 * 303.95616 * 17 16 13 41 41 H 1.09001 * 109.47414 * 300.00100 * 18 17 16 42 42 H 1.09003 * 109.46964 * 59.99930 * 18 17 16 43 43 H 0.96699 * 113.99995 * 59.99667 * 21 19 18 44 44 H 1.07998 * 119.99078 * 0.02562 * 23 22 19 45 45 H 1.08001 * 120.01261 * 180.25420 * 24 23 22 46 46 H 1.08007 * 120.01337 * 179.97438 * 27 25 24 47 47 H 1.07994 * 119.98890 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0745 1.5113 2.0487 6 6 2.0267 3.3496 1.5284 7 7 2.7110 4.0022 0.6144 8 14 1.5816 4.1874 3.1376 9 1 2.6582 3.9514 4.1328 10 1 1.4292 5.6469 2.9100 11 1 0.3038 3.6299 3.6490 12 6 1.9954 -0.7660 -1.1375 13 6 1.6315 -2.2426 -0.9702 14 1 0.5472 -2.3475 -0.9322 15 8 2.2009 -2.7391 0.2427 16 6 2.1793 -3.0404 -2.1553 17 7 1.7288 -4.4351 -2.0569 18 6 2.2374 -5.2331 -3.1804 19 6 1.7489 -6.6765 -3.0431 20 1 2.0377 -7.0666 -2.0671 21 8 0.3259 -6.7117 -3.1681 22 6 2.3692 -7.5219 -4.1256 23 6 1.8401 -7.5062 -5.4026 24 6 2.4112 -8.2773 -6.3972 25 6 3.5070 -9.0739 -6.1116 26 9 4.0631 -9.8317 -7.0820 27 6 4.0328 -9.0928 -4.8310 28 6 3.4631 -8.3172 -3.8390 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3634 0.5740 0.8524 31 1 -0.3634 0.4512 -0.9234 32 1 3.0797 1.3444 -0.1083 33 1 1.5610 1.9273 -0.8310 34 1 2.9856 4.9183 0.7764 35 1 3.0797 -0.6611 -1.1755 36 1 1.5611 -0.3873 -2.0628 37 1 3.1652 -2.6770 0.2789 38 1 1.8145 -2.6055 -3.0858 39 1 3.2688 -3.0086 -2.1421 40 1 1.9995 -4.8411 -1.1736 41 1 1.8733 -4.8136 -4.1183 42 1 3.3273 -5.2166 -3.1739 43 1 -0.0030 -6.3784 -4.0141 44 1 0.9829 -6.8878 -5.6242 45 1 2.0002 -8.2617 -7.3959 46 1 4.8874 -9.7142 -4.6069 47 1 3.8734 -8.3316 -2.8402 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843065005.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:23 Heat of formation + Delta-G solvation = -142.771652 kcal Electronic energy + Delta-G solvation = -26640.554518 eV Core-core repulsion = 22543.478530 eV Total energy + Delta-G solvation = -4097.075988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.94008 -40.64939 -39.57531 -38.10249 -37.18947 -35.57781 -34.61250 -32.54480 -32.05731 -31.19409 -29.28883 -28.40753 -26.92758 -25.13398 -24.16067 -23.61553 -22.68603 -22.08018 -21.71175 -18.89952 -18.56565 -18.06378 -17.68089 -17.43911 -17.18454 -16.73414 -16.63764 -16.32239 -16.05629 -15.88570 -15.74333 -15.38382 -15.35059 -14.82230 -14.59852 -14.49983 -14.09702 -13.95971 -13.90050 -13.75135 -13.38339 -13.23577 -13.12321 -12.86842 -12.66905 -12.53783 -12.50449 -12.36018 -12.17050 -12.00072 -11.91035 -11.59776 -11.41392 -11.13472 -10.65237 -10.61507 -10.10764 -9.61137 -9.33598 -8.95246 -8.20667 -6.30406 0.05691 0.23518 1.41603 1.42973 1.54302 2.40478 2.50146 2.90145 3.11794 3.25277 3.37730 3.57620 3.71961 3.72711 3.80292 3.91314 4.00047 4.08250 4.17445 4.19488 4.28764 4.32310 4.39019 4.47969 4.58160 4.69662 4.70467 4.74601 4.82736 4.86702 4.94430 4.96845 5.08021 5.12613 5.16744 5.18441 5.21247 5.33238 5.48719 5.65150 5.86210 5.99113 6.06310 6.32986 6.42982 6.64606 6.85808 6.86355 6.98489 7.39347 8.90214 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.034442 B = 0.001641 C = 0.001623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.774568 B =17059.097431 C =17252.933226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.970 3.030 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.093 0.907 15 O -0.560 6.560 16 C 0.040 3.960 17 N -0.683 5.683 18 C 0.036 3.964 19 C 0.161 3.839 20 H 0.108 0.892 21 O -0.558 6.558 22 C -0.129 4.129 23 C -0.083 4.083 24 C -0.156 4.156 25 C 0.074 3.926 26 F -0.151 7.151 27 C -0.157 4.157 28 C -0.084 4.084 29 H 0.075 0.925 30 H 0.053 0.947 31 H 0.010 0.990 32 H 0.005 0.995 33 H -0.039 1.039 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.032 0.968 37 H 0.379 0.621 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.348 0.652 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.384 0.616 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.149 0.851 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 -27.015 -13.990 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.190 1.190 12 C -0.106 4.106 13 C 0.069 3.931 14 H 0.111 0.889 15 O -0.365 6.365 16 C -0.090 4.090 17 N -0.315 5.315 18 C -0.094 4.094 19 C 0.101 3.899 20 H 0.126 0.874 21 O -0.365 6.365 22 C -0.130 4.130 23 C -0.101 4.101 24 C -0.174 4.174 25 C 0.055 3.945 26 F -0.130 7.130 27 C -0.176 4.176 28 C -0.102 4.102 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.029 0.971 32 H 0.023 0.977 33 H -0.022 1.022 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.050 0.950 37 H 0.227 0.773 38 H 0.100 0.900 39 H 0.060 0.940 40 H 0.167 0.833 41 H 0.099 0.901 42 H 0.063 0.937 43 H 0.234 0.766 44 H 0.171 0.829 45 H 0.167 0.833 46 H 0.166 0.834 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.032 -27.339 -13.198 30.358 hybrid contribution 1.461 1.370 -0.996 2.237 sum 1.494 -25.969 -14.193 29.633 Atomic orbital electron populations 1.22210 0.87913 1.01039 0.99542 1.61930 1.07909 1.14789 1.41621 1.19405 0.93665 0.84000 0.94881 1.21477 1.34824 0.97492 1.02406 0.92106 1.25911 0.95047 0.98027 1.00710 1.70077 1.39448 1.11901 1.36076 0.85377 0.78948 0.77229 0.79021 1.19825 1.20699 1.18994 1.22832 1.00215 0.95455 0.92048 1.21769 0.98575 0.88932 0.83869 0.88883 1.86569 1.26091 1.84705 1.39180 1.22492 0.97949 0.89584 0.98963 1.60283 1.63817 1.01451 1.05956 1.22668 0.98045 0.93251 0.95388 1.20679 0.80623 0.91810 0.96743 0.87412 1.86655 1.19832 1.87326 1.42708 1.20715 0.97292 0.99162 0.95869 1.21037 0.99767 0.97957 0.91353 1.21357 0.96121 0.97974 1.01995 1.18083 0.95626 0.94444 0.86331 1.91480 1.84804 1.74288 1.62423 1.21372 1.02441 1.02300 0.91498 1.21142 0.94753 0.94178 1.00087 0.90619 0.92769 0.97105 0.97714 1.02167 0.92692 0.91360 0.94988 0.77317 0.89975 0.93996 0.83266 0.90057 0.93721 0.76648 0.82869 0.83282 0.83361 0.82991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.64 9.14 127.69 1.17 2.80 16 2 N -0.54 -23.33 4.62 -927.05 -4.28 -27.61 16 3 C 0.21 11.11 4.72 85.55 0.40 11.51 16 4 C -0.52 -30.13 8.46 25.60 0.22 -29.91 16 5 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 6 C 0.00 0.05 5.46 84.66 0.46 0.52 16 7 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 8 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 12 C 0.02 0.79 4.62 86.30 0.40 1.19 16 13 C 0.13 3.38 3.07 30.60 0.09 3.48 16 14 H 0.09 2.68 6.55 -2.39 -0.02 2.67 16 15 O -0.56 -15.65 12.72 -148.98 -1.90 -17.54 16 16 C 0.04 0.78 5.36 86.31 0.46 1.24 16 17 N -0.68 -11.94 6.45 -513.90 -3.32 -15.26 16 18 C 0.04 0.46 5.30 86.30 0.46 0.91 16 19 C 0.16 1.94 3.39 29.85 0.10 2.04 16 20 H 0.11 1.30 8.00 -2.39 -0.02 1.28 16 21 O -0.56 -8.36 13.13 -148.98 -1.96 -10.32 16 22 C -0.13 -1.44 4.97 -19.86 -0.10 -1.54 16 23 C -0.08 -0.83 9.32 22.26 0.21 -0.63 16 24 C -0.16 -1.84 10.03 22.31 0.22 -1.62 16 25 C 0.07 1.08 7.30 22.37 0.16 1.25 16 26 F -0.15 -2.60 17.27 44.97 0.78 -1.83 16 27 C -0.16 -1.91 10.03 22.31 0.22 -1.69 16 28 C -0.08 -0.89 9.67 22.26 0.22 -0.68 16 29 H 0.08 2.58 6.47 -2.39 -0.02 2.56 16 30 H 0.05 2.35 6.76 -2.39 -0.02 2.33 16 31 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 33 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 34 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.07 2.26 7.93 -2.39 -0.02 2.24 16 36 H 0.03 1.06 8.12 -2.38 -0.02 1.04 16 37 H 0.38 8.43 9.05 -74.06 -0.67 7.76 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.35 6.26 8.29 -89.69 -0.74 5.52 16 41 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.38 3.30 7.49 -74.06 -0.55 2.75 16 44 H 0.15 0.78 6.77 -2.91 -0.02 0.76 16 45 H 0.15 1.27 8.06 -2.91 -0.02 1.25 16 46 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 47 H 0.15 1.00 8.04 -2.91 -0.02 0.98 16 Total: -1.00 -70.77 390.96 -4.63 -75.41 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -0.97 Total: 17.67 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 4.70 Total: -11.12 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -7.31 Total: -98.96 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -3.85 Total: -27.86 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -70.77 -4.63 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843065005.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.364 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds