Wall clock time and date at job start Tue Mar 31 2020 14:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99793 * 2 1 4 4 C 1.50696 * 109.47351 * 293.95574 * 3 2 1 5 5 H 1.08007 * 119.99780 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00506 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99253 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00341 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47238 * 59.99702 * 8 6 4 10 10 H 1.48503 * 109.47230 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47102 * 299.99648 * 8 6 4 12 12 C 1.46898 * 111.00443 * 123.95328 * 2 1 3 13 13 C 1.53004 * 109.46619 * 66.04574 * 12 2 1 14 14 H 1.08992 * 109.47535 * 304.99943 * 13 12 2 15 15 O 1.42897 * 109.47256 * 65.00537 * 13 12 2 16 16 C 1.52998 * 109.46799 * 184.99872 * 13 12 2 17 17 N 1.46903 * 109.47302 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00131 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46765 * 180.02562 * 18 17 16 20 20 H 1.08999 * 109.47583 * 305.00113 * 19 18 17 21 21 O 1.42899 * 109.46946 * 65.00552 * 19 18 17 22 22 C 1.50698 * 109.46688 * 185.00070 * 19 18 17 23 23 C 1.38246 * 119.97438 * 279.72338 * 22 19 18 24 24 C 1.38201 * 120.02272 * 179.77088 * 23 22 19 25 25 C 1.38457 * 119.97599 * 0.50836 * 24 23 22 26 26 F 1.35096 * 120.02699 * 179.77026 * 25 24 23 27 27 C 1.38461 * 119.94789 * 359.74550 * 25 24 23 28 28 C 1.38200 * 119.97484 * 0.02562 * 27 25 24 29 29 H 1.09002 * 109.47401 * 59.99808 * 1 2 3 30 30 H 1.09001 * 109.46874 * 299.99821 * 1 2 3 31 31 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46995 * 53.95554 * 3 2 1 33 33 H 1.09001 * 109.46848 * 173.95560 * 3 2 1 34 34 H 0.96999 * 119.99606 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47410 * 186.04624 * 12 2 1 36 36 H 1.08999 * 109.47216 * 306.04953 * 12 2 1 37 37 H 0.96701 * 114.00549 * 59.99438 * 15 13 12 38 38 H 1.08996 * 109.47622 * 300.00336 * 16 13 12 39 39 H 1.09009 * 109.47203 * 60.00381 * 16 13 12 40 40 H 1.00904 * 111.00240 * 303.96453 * 17 16 13 41 41 H 1.09000 * 109.47282 * 300.00189 * 18 17 16 42 42 H 1.08998 * 109.46842 * 60.00449 * 18 17 16 43 43 H 0.96699 * 114.00574 * 59.99479 * 21 19 18 44 44 H 1.07999 * 119.99146 * 0.02562 * 23 22 19 45 45 H 1.08001 * 120.01227 * 180.25387 * 24 23 22 46 46 H 1.08000 * 120.01093 * 179.97438 * 27 25 24 47 47 H 1.07997 * 119.98721 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0738 1.5116 -2.0484 6 6 2.0275 3.3493 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1380 9 1 0.1052 4.2245 -3.2846 10 1 2.1147 5.5734 -3.1381 11 1 2.1732 3.4295 -4.2705 12 6 1.9956 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5533 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0701 -3.0199 2.2129 17 7 1.7201 -4.4376 2.0526 18 6 2.1267 -5.2166 3.2299 19 6 1.7470 -6.6846 3.0259 20 1 0.6824 -6.7571 2.8032 21 8 2.4992 -7.2243 1.9373 22 6 2.0517 -7.4613 4.2808 23 6 3.3454 -7.8732 4.5412 24 6 3.6268 -8.5814 5.6941 25 6 2.6107 -8.8874 6.5834 26 9 2.8838 -9.5837 7.7084 27 6 1.3144 -8.4788 6.3190 28 6 1.0362 -7.7667 5.1678 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3445 0.1082 34 1 2.9879 4.9175 -0.7776 35 1 3.0798 -0.6610 1.1755 36 1 1.5612 -0.3873 2.0628 37 1 3.2602 -2.7166 -0.1361 38 1 3.1484 -2.9236 2.3400 39 1 1.5636 -2.6180 3.0905 40 1 0.7341 -4.5481 1.8691 41 1 3.2054 -5.1359 3.3641 42 1 1.6205 -4.8295 4.1141 43 1 3.4569 -7.1926 2.0669 44 1 4.1372 -7.6380 3.8454 45 1 4.6383 -8.8996 5.8993 46 1 0.5210 -8.7173 7.0118 47 1 0.0253 -7.4475 4.9616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843065006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:27 Heat of formation + Delta-G solvation = -113.026590 kcal Electronic energy + Delta-G solvation = -26641.004980 eV Core-core repulsion = 22545.218834 eV Total energy + Delta-G solvation = -4095.786145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.35794 -40.14326 -38.34379 -37.36070 -35.75710 -34.67063 -32.51180 -31.96655 -31.57621 -30.01021 -27.86519 -26.96595 -25.58044 -23.90582 -23.58542 -22.81128 -21.72608 -21.16581 -20.15656 -18.39598 -17.44415 -17.08492 -16.68130 -16.37892 -16.05615 -15.93222 -15.48630 -15.31878 -15.03088 -14.79554 -14.58640 -14.31455 -14.21899 -14.08241 -13.56522 -13.45027 -13.38164 -13.19546 -12.76833 -12.59542 -12.37965 -11.95158 -11.83183 -11.66040 -11.43128 -11.32321 -11.09458 -10.90715 -10.76706 -10.65924 -10.50532 -10.26920 -9.96179 -9.65962 -9.56112 -9.14795 -9.05136 -8.55956 -8.42362 -7.19374 -6.01891 -4.02851 0.55807 0.68132 2.98541 3.35168 3.38597 3.42396 3.64713 3.76060 4.08262 4.16013 4.30237 4.37345 4.45275 4.54463 4.64983 4.74869 4.76997 4.87162 4.90520 5.13467 5.23112 5.30459 5.32496 5.36931 5.40990 5.45727 5.55621 5.58385 5.61168 5.67621 5.68254 5.95926 6.03801 6.17327 6.29934 6.32649 6.40979 6.73250 6.75873 7.11873 7.27114 7.32312 7.33112 7.81055 8.05713 8.15782 8.21792 8.56129 9.04864 9.61295 11.09060 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.035388 B = 0.001638 C = 0.001622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.030050 B =17094.872596 C =17259.318165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.025 3.975 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.534 6.534 16 C 0.026 3.974 17 N -0.669 5.669 18 C 0.031 3.969 19 C 0.154 3.846 20 H 0.108 0.892 21 O -0.538 6.538 22 C -0.126 4.126 23 C -0.081 4.081 24 C -0.150 4.150 25 C 0.097 3.903 26 F -0.140 7.140 27 C -0.151 4.151 28 C -0.080 4.080 29 H 0.074 0.926 30 H 0.008 0.992 31 H 0.046 0.954 32 H -0.011 1.011 33 H 0.028 0.972 34 H 0.261 0.739 35 H 0.070 0.930 36 H 0.026 0.974 37 H 0.368 0.632 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.342 0.658 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.372 0.628 44 H 0.133 0.867 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -25.742 15.395 30.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.105 4.105 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.337 6.337 16 C -0.104 4.104 17 N -0.299 5.299 18 C -0.099 4.099 19 C 0.094 3.906 20 H 0.125 0.875 21 O -0.343 6.343 22 C -0.127 4.127 23 C -0.099 4.099 24 C -0.169 4.169 25 C 0.078 3.922 26 F -0.119 7.119 27 C -0.170 4.170 28 C -0.098 4.098 29 H 0.092 0.908 30 H 0.027 0.973 31 H 0.065 0.935 32 H 0.006 0.994 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.214 0.786 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.160 0.840 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.220 0.780 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.155 0.845 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.935 -26.157 14.239 29.796 hybrid contribution 0.066 1.431 1.575 2.128 sum -0.870 -24.726 15.814 29.364 Atomic orbital electron populations 1.22250 0.89080 0.99109 1.00723 1.62028 1.06748 1.17437 1.39110 1.19745 0.95282 0.81578 0.96606 1.21138 1.34737 0.96870 1.01698 0.91830 1.24998 0.95323 0.97349 0.97042 1.69952 1.38471 1.11505 1.34135 0.86535 0.78681 0.78247 0.83794 1.20308 1.21408 1.20093 1.22724 1.00556 0.93927 0.93317 1.21870 0.97572 0.90590 0.84323 0.88988 1.86603 1.22866 1.83851 1.40428 1.22755 1.01554 0.87959 0.98108 1.60265 1.23797 1.08521 1.37363 1.22679 1.01655 0.93323 0.92196 1.20753 0.97238 0.89723 0.82904 0.87470 1.86692 1.21901 1.83905 1.41772 1.20690 0.93927 1.00178 0.97871 1.20780 0.96314 0.96615 0.96189 1.21148 0.99349 1.01464 0.94900 1.17771 0.94261 0.95907 0.84307 1.91512 1.94540 1.76647 1.49158 1.21174 0.95433 1.01065 0.99345 1.20896 0.99457 0.96597 0.92853 0.90773 0.97317 0.93548 0.99353 0.95357 0.92922 0.91132 0.95638 0.78594 0.90698 0.94753 0.83957 0.90532 0.94439 0.78002 0.84915 0.84493 0.84529 0.84746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.17 60.07 0.55 1.28 16 2 N -0.53 -11.45 4.70 -244.37 -1.15 -12.60 16 3 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 4 C -0.51 -14.39 8.52 -34.44 -0.29 -14.68 16 5 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.87 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 C 0.02 0.42 4.60 -3.82 -0.02 0.40 16 13 C 0.12 1.63 3.13 -26.73 -0.08 1.55 16 14 H 0.09 1.33 6.26 -51.93 -0.33 1.00 16 15 O -0.53 -8.40 13.15 -35.23 -0.46 -8.86 16 16 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 17 N -0.67 -6.51 6.32 -113.77 -0.72 -7.23 16 18 C 0.03 0.23 5.30 -3.82 -0.02 0.21 16 19 C 0.15 1.08 3.39 -27.88 -0.09 0.98 16 20 H 0.11 0.73 8.00 -51.93 -0.42 0.32 16 21 O -0.54 -4.62 13.13 -35.23 -0.46 -5.09 16 22 C -0.13 -0.81 4.97 -104.62 -0.52 -1.33 16 23 C -0.08 -0.48 9.32 -39.59 -0.37 -0.85 16 24 C -0.15 -0.97 10.03 -39.51 -0.40 -1.37 16 25 C 0.10 0.73 7.30 -39.42 -0.29 0.45 16 26 F -0.14 -1.21 17.27 2.25 0.04 -1.17 16 27 C -0.15 -0.99 10.03 -39.51 -0.40 -1.39 16 28 C -0.08 -0.49 9.67 -39.59 -0.38 -0.87 16 29 H 0.07 1.58 6.86 -51.93 -0.36 1.22 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.78 6.21 -51.93 -0.32 0.46 16 32 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 33 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.19 7.93 -51.93 -0.41 0.78 16 36 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 37 H 0.37 4.84 9.05 45.56 0.41 5.25 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 40 H 0.34 3.25 8.73 -39.29 -0.34 2.91 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.37 2.06 7.49 45.56 0.34 2.41 16 44 H 0.13 0.50 6.77 -52.49 -0.36 0.15 16 45 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 46 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 47 H 0.13 0.57 8.04 -52.49 -0.42 0.14 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -33.42 391.41 -9.51 -42.93 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.92 Total: 4.32 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -2.45 Total: -8.88 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -1.13 Total: -45.97 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.93 Total: -13.95 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.42 -9.51 -42.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843065006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.095 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds