Wall clock time and date at job start Tue Mar 31 2020 14:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99868 * 2 1 4 4 C 1.50699 * 109.47215 * 293.95715 * 3 2 1 5 5 H 1.08000 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99892 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00060 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00198 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47263 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47644 * 119.99758 * 8 6 4 11 11 H 1.48500 * 109.47386 * 240.00030 * 8 6 4 12 12 C 1.46897 * 111.00112 * 123.95921 * 2 1 3 13 13 C 1.53000 * 109.47157 * 66.04400 * 12 2 1 14 14 H 1.08999 * 109.46832 * 304.99812 * 13 12 2 15 15 O 1.42895 * 109.47317 * 65.00215 * 13 12 2 16 16 C 1.52998 * 109.46879 * 185.00013 * 13 12 2 17 17 N 1.46900 * 109.47093 * 179.97438 * 16 13 12 18 18 C 1.46905 * 111.00154 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47150 * 180.02562 * 18 17 16 20 20 H 1.09002 * 109.47153 * 304.99641 * 19 18 17 21 21 O 1.42898 * 109.47319 * 64.99949 * 19 18 17 22 22 C 1.50699 * 109.47078 * 184.99848 * 19 18 17 23 23 C 1.38223 * 120.01351 * 264.99829 * 22 19 18 24 24 C 1.38215 * 120.02694 * 179.97438 * 23 22 19 25 25 C 1.38272 * 120.05419 * 0.02562 * 24 23 22 26 26 C 1.38182 * 120.01956 * 0.02562 * 25 24 23 27 27 C 1.38434 * 120.01417 * 84.71973 * 22 19 18 28 28 F 1.35095 * 120.02639 * 0.02562 * 27 22 19 29 29 H 1.09001 * 109.47299 * 296.04297 * 1 2 3 30 30 H 1.08998 * 109.47639 * 56.03946 * 1 2 3 31 31 H 1.09006 * 109.47578 * 176.04261 * 1 2 3 32 32 H 1.08992 * 109.47006 * 53.95804 * 3 2 1 33 33 H 1.09002 * 109.46711 * 173.95488 * 3 2 1 34 34 H 0.97005 * 120.00129 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46752 * 306.04488 * 12 2 1 36 36 H 1.08995 * 109.46742 * 186.04638 * 12 2 1 37 37 H 0.96702 * 114.00242 * 59.99753 * 15 13 12 38 38 H 1.09004 * 109.47116 * 59.99975 * 16 13 12 39 39 H 1.08999 * 109.47214 * 300.00116 * 16 13 12 40 40 H 1.00895 * 110.99884 * 56.04570 * 17 16 13 41 41 H 1.09001 * 109.47063 * 59.99499 * 18 17 16 42 42 H 1.09004 * 109.46681 * 300.00124 * 18 17 16 43 43 H 0.96698 * 113.99898 * 59.99520 * 21 19 18 44 44 H 1.08005 * 119.98465 * 359.95805 * 23 22 19 45 45 H 1.08002 * 119.97828 * 180.02562 * 24 23 22 46 46 H 1.07990 * 119.99012 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.00823 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5114 -2.0488 6 6 2.0275 3.3492 -1.5288 7 7 2.7136 4.0012 -0.6157 8 14 1.5825 4.1871 -3.1379 9 1 0.8143 3.2449 -3.9908 10 1 0.7559 5.3886 -2.8583 11 1 2.8239 4.5937 -3.8442 12 6 1.9954 -0.7661 1.1375 13 6 1.6314 -2.2427 0.9701 14 1 0.5531 -2.3389 0.8431 15 8 2.2955 -2.7696 -0.1802 16 6 2.0700 -3.0200 2.2128 17 7 1.7199 -4.4376 2.0525 18 6 2.1264 -5.2167 3.2297 19 6 1.7467 -6.6847 3.0257 20 1 0.6821 -6.7571 2.8031 21 8 2.4988 -7.2245 1.9371 22 6 2.0514 -7.4615 4.2806 23 6 3.2536 -8.1323 4.4038 24 6 3.5336 -8.8443 5.5549 25 6 2.6114 -8.8870 6.5843 26 6 1.4084 -8.2180 6.4629 27 6 1.1298 -7.4987 5.3129 28 9 -0.0435 -6.8393 5.1958 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3634 -1.0252 -0.0709 32 1 1.5611 1.9273 0.8309 33 1 3.0797 1.3444 0.1082 34 1 2.9888 4.9171 -0.7780 35 1 1.5611 -0.3873 2.0627 36 1 3.0797 -0.6611 1.1754 37 1 3.2601 -2.7167 -0.1362 38 1 1.5634 -2.6181 3.0904 39 1 3.1482 -2.9237 2.3399 40 1 2.1251 -4.8170 1.2099 41 1 1.6203 -4.8296 4.1141 42 1 3.2051 -5.1361 3.3639 43 1 3.4565 -7.1928 2.0668 44 1 3.9745 -8.1002 3.6001 45 1 4.4734 -9.3678 5.6505 46 1 2.8310 -9.4440 7.4830 47 1 0.6881 -8.2518 7.2669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843066524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:37 Heat of formation + Delta-G solvation = -114.844495 kcal Electronic energy + Delta-G solvation = -27063.898675 eV Core-core repulsion = 22968.033699 eV Total energy + Delta-G solvation = -4095.864976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.30744 -40.02714 -38.43479 -37.56607 -35.78198 -34.63441 -32.51407 -32.20778 -31.09472 -30.10868 -28.02868 -26.96636 -25.67131 -23.94920 -23.19721 -22.77221 -21.74927 -21.17214 -20.14919 -18.47653 -17.25575 -17.16457 -16.78600 -16.36455 -16.07731 -15.98880 -15.62841 -15.30355 -14.92161 -14.89046 -14.55247 -14.52227 -14.19445 -13.97521 -13.58959 -13.47087 -13.17423 -12.95355 -12.67304 -12.45461 -12.40594 -11.99848 -11.88373 -11.78141 -11.48714 -11.31607 -11.08983 -10.86050 -10.74003 -10.66893 -10.64711 -10.26136 -9.99755 -9.62543 -9.48349 -9.16088 -9.06975 -8.58584 -8.42473 -7.17197 -6.01339 -4.02060 0.60731 0.67164 3.02614 3.32771 3.39976 3.46004 3.66396 3.75571 3.94386 4.21446 4.28793 4.42637 4.46364 4.63868 4.67388 4.73806 4.77369 4.83082 4.97205 5.17751 5.23976 5.29418 5.34205 5.38795 5.42616 5.49628 5.53628 5.65304 5.67480 5.75049 5.83544 5.86464 6.08042 6.23183 6.34898 6.35732 6.43722 6.78030 6.81587 7.13070 7.28344 7.29924 7.34788 7.82610 7.97571 8.11895 8.22800 8.57607 9.06514 9.62192 11.09700 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.001795 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.995331 B =15590.830293 C =15748.610763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.679 5.679 18 C 0.036 3.964 19 C 0.151 3.849 20 H 0.122 0.878 21 O -0.546 6.546 22 C -0.150 4.150 23 C -0.085 4.085 24 C -0.127 4.127 25 C -0.092 4.092 26 C -0.152 4.152 27 C 0.109 3.891 28 F -0.133 7.133 29 H 0.008 0.992 30 H 0.075 0.925 31 H 0.048 0.952 32 H -0.011 1.011 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.029 0.971 36 H 0.068 0.932 37 H 0.365 0.635 38 H 0.078 0.922 39 H 0.031 0.969 40 H 0.355 0.645 41 H 0.080 0.920 42 H 0.033 0.967 43 H 0.371 0.629 44 H 0.132 0.868 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.360 -27.450 16.057 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.348 6.348 16 C -0.102 4.102 17 N -0.312 5.312 18 C -0.094 4.094 19 C 0.091 3.909 20 H 0.139 0.861 21 O -0.352 6.352 22 C -0.152 4.152 23 C -0.103 4.103 24 C -0.145 4.145 25 C -0.110 4.110 26 C -0.171 4.171 27 C 0.089 3.911 28 F -0.111 7.111 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.087 0.913 37 H 0.211 0.789 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.176 0.824 41 H 0.099 0.901 42 H 0.051 0.949 43 H 0.219 0.781 44 H 0.150 0.850 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.694 -27.582 15.415 31.605 hybrid contribution 1.445 1.368 0.576 2.072 sum 2.140 -26.214 15.990 30.781 Atomic orbital electron populations 1.22266 0.88921 0.99712 1.00406 1.62023 1.06904 1.17376 1.39101 1.19747 0.95226 0.81669 0.96648 1.21221 1.34526 0.96833 1.01674 0.91693 1.25004 0.95354 0.97377 0.97061 1.69972 1.38596 1.11412 1.34097 0.86426 0.78140 0.79264 0.83516 1.19588 1.21154 1.21041 1.22709 1.00340 0.93888 0.93506 1.21995 0.98379 0.90656 0.83557 0.87753 1.86626 1.22712 1.83803 1.41665 1.22700 0.98453 0.88846 1.00213 1.60264 1.64303 1.01865 1.04816 1.22581 0.98321 0.93114 0.95411 1.20792 0.97969 0.89629 0.82487 0.86059 1.86714 1.21874 1.84389 1.42177 1.20645 0.95372 1.02175 0.96959 1.20803 0.95355 0.96082 0.98037 1.21209 1.00067 0.99737 0.93514 1.21071 0.92760 0.98038 0.99147 1.21206 0.99212 0.99336 0.97374 1.17498 0.82487 0.95722 0.95354 1.91536 1.44833 1.78568 1.96187 0.97310 0.90671 0.93319 0.99307 0.95434 0.93041 0.95343 0.91345 0.78864 0.90397 0.95055 0.82434 0.90129 0.94901 0.78128 0.85024 0.85102 0.84887 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.71 4.70 -244.37 -1.15 -12.86 16 3 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 4 C -0.50 -14.46 8.46 -34.44 -0.29 -14.75 16 5 H 0.06 1.86 7.12 -52.49 -0.37 1.49 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 C 0.03 0.45 4.60 -3.83 -0.02 0.43 16 13 C 0.11 1.68 3.19 -26.73 -0.09 1.59 16 14 H 0.10 1.68 6.34 -51.93 -0.33 1.35 16 15 O -0.54 -8.38 12.62 -35.23 -0.44 -8.83 16 16 C 0.03 0.33 5.39 -3.83 -0.02 0.31 16 17 N -0.68 -7.61 6.50 -113.77 -0.74 -8.35 16 18 C 0.04 0.33 5.34 -3.82 -0.02 0.31 16 19 C 0.15 1.33 3.22 -27.88 -0.09 1.24 16 20 H 0.12 1.28 7.80 -51.93 -0.41 0.88 16 21 O -0.55 -4.68 12.51 -35.23 -0.44 -5.12 16 22 C -0.15 -1.20 5.07 -104.56 -0.53 -1.73 16 23 C -0.08 -0.51 9.30 -39.60 -0.37 -0.88 16 24 C -0.13 -0.66 10.04 -39.58 -0.40 -1.06 16 25 C -0.09 -0.49 10.05 -39.59 -0.40 -0.88 16 26 C -0.15 -1.03 10.03 -39.51 -0.40 -1.42 16 27 C 0.11 0.94 7.24 -39.42 -0.29 0.66 16 28 F -0.13 -1.35 16.57 2.25 0.04 -1.32 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 31 H 0.05 0.88 6.37 -51.93 -0.33 0.55 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 37 H 0.37 4.49 9.05 45.56 0.41 4.90 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.36 4.09 7.68 -39.29 -0.30 3.79 16 41 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.37 1.81 7.33 45.56 0.33 2.14 16 44 H 0.13 0.51 6.41 -52.48 -0.34 0.17 16 45 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 46 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 47 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -33.39 388.45 -9.51 -42.90 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.87 Total: 5.50 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -2.47 Total: -8.42 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -1.15 Total: -47.54 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: -0.89 Total: -13.94 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.39 -9.51 -42.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.949 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds