Wall clock time and date at job start Tue Mar 31 2020 14:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99868 * 2 1 4 4 C 1.50699 * 109.47215 * 293.95715 * 3 2 1 5 5 H 1.08000 * 120.00251 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99892 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00060 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00198 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47263 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47644 * 119.99758 * 8 6 4 11 11 H 1.48500 * 109.47386 * 240.00030 * 8 6 4 12 12 C 1.46897 * 111.00112 * 123.95921 * 2 1 3 13 13 C 1.53000 * 109.47157 * 66.04400 * 12 2 1 14 14 H 1.08999 * 109.46832 * 304.99812 * 13 12 2 15 15 O 1.42895 * 109.47317 * 65.00215 * 13 12 2 16 16 C 1.52998 * 109.46879 * 185.00013 * 13 12 2 17 17 N 1.46900 * 109.47093 * 179.97438 * 16 13 12 18 18 C 1.46905 * 111.00154 * 180.02562 * 17 16 13 19 19 C 1.52997 * 109.47150 * 180.02562 * 18 17 16 20 20 H 1.09002 * 109.47153 * 304.99641 * 19 18 17 21 21 O 1.42898 * 109.47319 * 64.99949 * 19 18 17 22 22 C 1.50699 * 109.47078 * 184.99848 * 19 18 17 23 23 C 1.38223 * 120.01351 * 264.99829 * 22 19 18 24 24 C 1.38215 * 120.02694 * 179.97438 * 23 22 19 25 25 C 1.38272 * 120.05419 * 0.02562 * 24 23 22 26 26 C 1.38182 * 120.01956 * 0.02562 * 25 24 23 27 27 C 1.38434 * 120.01417 * 84.71973 * 22 19 18 28 28 F 1.35095 * 120.02639 * 0.02562 * 27 22 19 29 29 H 1.09001 * 109.47299 * 296.04297 * 1 2 3 30 30 H 1.08998 * 109.47639 * 56.03946 * 1 2 3 31 31 H 1.09006 * 109.47578 * 176.04261 * 1 2 3 32 32 H 1.08992 * 109.47006 * 53.95804 * 3 2 1 33 33 H 1.09002 * 109.46711 * 173.95488 * 3 2 1 34 34 H 0.97005 * 120.00129 * 179.97438 * 7 6 4 35 35 H 1.09003 * 109.46752 * 306.04488 * 12 2 1 36 36 H 1.08995 * 109.46742 * 186.04638 * 12 2 1 37 37 H 0.96702 * 114.00242 * 59.99753 * 15 13 12 38 38 H 1.09004 * 109.47116 * 59.99975 * 16 13 12 39 39 H 1.08999 * 109.47214 * 300.00116 * 16 13 12 40 40 H 1.00895 * 110.99884 * 56.04570 * 17 16 13 41 41 H 1.09001 * 109.47063 * 59.99499 * 18 17 16 42 42 H 1.09004 * 109.46681 * 300.00124 * 18 17 16 43 43 H 0.96698 * 113.99898 * 59.99520 * 21 19 18 44 44 H 1.08005 * 119.98465 * 359.95805 * 23 22 19 45 45 H 1.08002 * 119.97828 * 180.02562 * 24 23 22 46 46 H 1.07990 * 119.99012 * 179.97438 * 25 24 23 47 47 H 1.07997 * 120.00823 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2984 5 1 1.0745 1.5114 -2.0488 6 6 2.0275 3.3492 -1.5288 7 7 2.7136 4.0012 -0.6157 8 14 1.5825 4.1871 -3.1379 9 1 0.8143 3.2449 -3.9908 10 1 0.7559 5.3886 -2.8583 11 1 2.8239 4.5937 -3.8442 12 6 1.9954 -0.7661 1.1375 13 6 1.6314 -2.2427 0.9701 14 1 0.5531 -2.3389 0.8431 15 8 2.2955 -2.7696 -0.1802 16 6 2.0700 -3.0200 2.2128 17 7 1.7199 -4.4376 2.0525 18 6 2.1264 -5.2167 3.2297 19 6 1.7467 -6.6847 3.0257 20 1 0.6821 -6.7571 2.8031 21 8 2.4988 -7.2245 1.9371 22 6 2.0514 -7.4615 4.2806 23 6 3.2536 -8.1323 4.4038 24 6 3.5336 -8.8443 5.5549 25 6 2.6114 -8.8870 6.5843 26 6 1.4084 -8.2180 6.4629 27 6 1.1298 -7.4987 5.3129 28 9 -0.0435 -6.8393 5.1958 29 1 -0.3634 0.4512 0.9233 30 1 -0.3634 0.5740 -0.8523 31 1 -0.3634 -1.0252 -0.0709 32 1 1.5611 1.9273 0.8309 33 1 3.0797 1.3444 0.1082 34 1 2.9888 4.9171 -0.7780 35 1 1.5611 -0.3873 2.0627 36 1 3.0797 -0.6611 1.1754 37 1 3.2601 -2.7167 -0.1362 38 1 1.5634 -2.6181 3.0904 39 1 3.1482 -2.9237 2.3399 40 1 2.1251 -4.8170 1.2099 41 1 1.6203 -4.8296 4.1141 42 1 3.2051 -5.1361 3.3639 43 1 3.4565 -7.1928 2.0668 44 1 3.9745 -8.1002 3.6001 45 1 4.4734 -9.3678 5.6505 46 1 2.8310 -9.4440 7.4830 47 1 0.6881 -8.2518 7.2669 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843066524.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:36 Heat of formation + Delta-G solvation = -142.455849 kcal Electronic energy + Delta-G solvation = -27065.095993 eV Core-core repulsion = 22968.033699 eV Total energy + Delta-G solvation = -4097.062294 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.96484 -40.57645 -39.62553 -38.34461 -37.26832 -35.61759 -34.63354 -32.80078 -31.60075 -31.26121 -29.38438 -28.56040 -27.07862 -25.26735 -23.89673 -23.58208 -22.71789 -22.20053 -21.77238 -19.02828 -18.58505 -17.96523 -17.78922 -17.51277 -17.22899 -16.73238 -16.69274 -16.42035 -16.23451 -15.94664 -15.68690 -15.39727 -15.33711 -15.05135 -14.76909 -14.52181 -14.19013 -13.93096 -13.77927 -13.62769 -13.34665 -13.21516 -12.92710 -12.92615 -12.71324 -12.58429 -12.53320 -12.39500 -12.29265 -12.08935 -12.01913 -11.64576 -11.44512 -11.28535 -10.71950 -10.63426 -9.96688 -9.66685 -9.43277 -8.97827 -8.21919 -6.31673 0.11681 0.21384 1.40373 1.40956 1.55182 2.39581 2.55266 2.83643 3.10438 3.23337 3.32103 3.37573 3.66591 3.67569 3.78777 3.89792 3.98025 4.04752 4.10349 4.18954 4.25801 4.34392 4.37912 4.42629 4.54093 4.61516 4.65365 4.71366 4.75469 4.78074 4.90844 5.04764 5.05165 5.13931 5.16194 5.19622 5.30698 5.34280 5.43652 5.64169 5.90361 5.91825 6.04241 6.30577 6.40752 6.62272 6.68391 6.84527 6.95284 7.38080 8.89273 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.032029 B = 0.001795 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.995331 B =15590.830293 C =15748.610763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.128 3.872 14 H 0.092 0.908 15 O -0.559 6.559 16 C 0.040 3.960 17 N -0.689 5.689 18 C 0.042 3.958 19 C 0.160 3.840 20 H 0.096 0.904 21 O -0.558 6.558 22 C -0.162 4.162 23 C -0.089 4.089 24 C -0.125 4.125 25 C -0.091 4.091 26 C -0.161 4.161 27 C 0.078 3.922 28 F -0.151 7.151 29 H 0.011 0.989 30 H 0.055 0.945 31 H 0.075 0.925 32 H -0.039 1.039 33 H 0.005 0.995 34 H 0.265 0.735 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.379 0.621 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.354 0.646 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.387 0.613 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.161 0.839 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.434 -29.069 16.245 33.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.202 1.202 12 C -0.104 4.104 13 C 0.068 3.932 14 H 0.110 0.890 15 O -0.365 6.365 16 C -0.091 4.091 17 N -0.323 5.323 18 C -0.087 4.087 19 C 0.101 3.899 20 H 0.114 0.886 21 O -0.365 6.365 22 C -0.164 4.164 23 C -0.107 4.107 24 C -0.143 4.143 25 C -0.108 4.108 26 C -0.180 4.180 27 C 0.059 3.941 28 F -0.130 7.130 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.093 0.907 32 H -0.021 1.021 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.089 0.911 37 H 0.227 0.773 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.175 0.825 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.238 0.762 44 H 0.171 0.829 45 H 0.177 0.823 46 H 0.178 0.822 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.782 -29.228 15.617 33.187 hybrid contribution 1.168 1.774 0.580 2.202 sum 2.950 -27.454 16.197 32.012 Atomic orbital electron populations 1.22232 0.87930 1.01034 0.99670 1.61940 1.07916 1.14942 1.41638 1.19403 0.93693 0.83870 0.94931 1.21504 1.34759 0.97520 1.02379 0.92123 1.25922 0.95024 0.98033 1.00784 1.70086 1.39376 1.11918 1.36134 0.85312 0.78118 0.78128 0.78924 1.18935 1.20317 1.20239 1.22823 1.00334 0.95205 0.92043 1.21769 0.97682 0.88883 0.84822 0.89032 1.86588 1.24086 1.83657 1.42127 1.22497 0.99261 0.88905 0.98388 1.60214 1.64854 1.01655 1.05531 1.22536 0.99115 0.92993 0.94095 1.20496 0.96758 0.89596 0.83095 0.88625 1.86677 1.23338 1.84330 1.42200 1.20628 0.96310 1.03076 0.96377 1.21128 0.94903 0.95474 0.99148 1.21609 1.00969 0.98897 0.92791 1.21459 0.91899 0.97282 1.00195 1.21450 1.00271 0.99214 0.97037 1.17876 0.82433 0.97097 0.96722 1.91481 1.45929 1.79185 1.96387 0.97035 0.92581 0.90693 1.02134 0.97650 0.92657 0.94962 0.91128 0.77269 0.90248 0.93574 0.82538 0.91010 0.93222 0.76237 0.82853 0.82324 0.82187 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.14 127.69 1.17 2.79 16 2 N -0.54 -24.09 4.70 -927.06 -4.36 -28.45 16 3 C 0.21 11.31 4.72 85.56 0.40 11.72 16 4 C -0.52 -30.51 8.46 25.60 0.22 -30.30 16 5 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 6 C 0.00 0.01 5.46 84.65 0.46 0.47 16 7 N -0.93 -56.85 13.29 21.45 0.28 -56.57 16 8 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.03 0.88 4.60 86.30 0.40 1.27 16 13 C 0.13 3.66 3.19 30.59 0.10 3.76 16 14 H 0.09 2.87 6.34 -2.39 -0.02 2.85 16 15 O -0.56 -16.56 12.62 -148.98 -1.88 -18.44 16 16 C 0.04 0.88 5.39 86.30 0.47 1.34 16 17 N -0.69 -14.79 6.50 -513.87 -3.34 -18.14 16 18 C 0.04 0.74 5.34 86.30 0.46 1.20 16 19 C 0.16 2.79 3.22 29.85 0.10 2.89 16 20 H 0.10 2.14 7.80 -2.39 -0.02 2.12 16 21 O -0.56 -8.91 12.51 -148.98 -1.86 -10.77 16 22 C -0.16 -2.49 5.07 -19.82 -0.10 -2.59 16 23 C -0.09 -0.89 9.30 22.26 0.21 -0.68 16 24 C -0.12 -0.93 10.04 22.27 0.22 -0.70 16 25 C -0.09 -0.74 10.05 22.26 0.22 -0.51 16 26 C -0.16 -2.03 10.03 22.31 0.22 -1.80 16 27 C 0.08 1.36 7.24 22.37 0.16 1.52 16 28 F -0.15 -3.27 16.57 44.97 0.75 -2.53 16 29 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 2.48 6.76 -2.39 -0.02 2.46 16 31 H 0.07 2.65 6.37 -2.38 -0.02 2.63 16 32 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 33 H 0.01 0.31 7.93 -2.39 -0.02 0.29 16 34 H 0.26 15.05 8.31 -92.70 -0.77 14.27 16 35 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 36 H 0.07 2.41 7.93 -2.39 -0.02 2.39 16 37 H 0.38 8.79 9.05 -74.06 -0.67 8.12 16 38 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.35 7.75 7.68 -89.70 -0.69 7.06 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.39 2.98 7.33 -74.06 -0.54 2.44 16 44 H 0.15 0.73 6.41 -2.91 -0.02 0.71 16 45 H 0.16 0.28 8.06 -2.91 -0.02 0.25 16 46 H 0.16 0.38 8.06 -2.92 -0.02 0.35 16 47 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -72.86 388.45 -4.58 -77.44 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.90 Total: 19.87 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 4.71 Total: -9.62 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -7.41 Total: -103.15 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -3.74 Total: -29.21 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.75 Total: -2.53 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -72.86 -4.58 -77.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066524.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.015 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds