Wall clock time and date at job start Tue Mar 31 2020 14:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00158 * 2 1 4 4 C 1.50704 * 109.46945 * 293.95362 * 3 2 1 5 5 H 1.07999 * 119.99713 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99711 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00510 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99826 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47005 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47042 * 120.00000 * 8 6 4 11 11 H 1.48506 * 109.46737 * 239.99936 * 8 6 4 12 12 C 1.46903 * 110.99716 * 123.95327 * 2 1 3 13 13 C 1.52993 * 109.47346 * 66.04690 * 12 2 1 14 14 H 1.08997 * 109.47089 * 305.00137 * 13 12 2 15 15 O 1.42902 * 109.47273 * 64.99865 * 13 12 2 16 16 C 1.52998 * 109.47517 * 184.99715 * 13 12 2 17 17 N 1.46894 * 109.47557 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00111 * 179.97438 * 17 16 13 19 19 C 1.53007 * 109.47096 * 180.02562 * 18 17 16 20 20 H 1.09002 * 109.46675 * 60.00006 * 19 18 17 21 21 O 1.42907 * 109.47019 * 300.00375 * 19 18 17 22 22 C 1.50697 * 109.47093 * 180.02562 * 19 18 17 23 23 C 1.38216 * 120.01502 * 94.97962 * 22 19 18 24 24 C 1.38226 * 120.02514 * 179.97438 * 23 22 19 25 25 C 1.38265 * 120.05338 * 0.02562 * 24 23 22 26 26 C 1.38176 * 120.02279 * 359.74109 * 25 24 23 27 27 C 1.38436 * 120.00925 * 274.99717 * 22 19 18 28 28 F 1.35104 * 120.02854 * 359.95937 * 27 22 19 29 29 H 1.09001 * 109.47499 * 296.04746 * 1 2 3 30 30 H 1.09000 * 109.47324 * 56.04758 * 1 2 3 31 31 H 1.08998 * 109.47216 * 176.04404 * 1 2 3 32 32 H 1.09003 * 109.47088 * 53.94895 * 3 2 1 33 33 H 1.08998 * 109.47528 * 173.95089 * 3 2 1 34 34 H 0.96992 * 120.00177 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47523 * 306.04592 * 12 2 1 36 36 H 1.09008 * 109.46777 * 186.04784 * 12 2 1 37 37 H 0.96702 * 114.00232 * 59.99665 * 15 13 12 38 38 H 1.08999 * 109.46954 * 59.99712 * 16 13 12 39 39 H 1.09003 * 109.46904 * 300.00105 * 16 13 12 40 40 H 1.00905 * 110.99892 * 56.04590 * 17 16 13 41 41 H 1.08994 * 109.46733 * 60.00489 * 18 17 16 42 42 H 1.08991 * 109.47317 * 300.00222 * 18 17 16 43 43 H 0.96703 * 113.99673 * 299.99928 * 21 19 18 44 44 H 1.08001 * 119.98628 * 0.02562 * 23 22 19 45 45 H 1.08001 * 119.97063 * 179.97438 * 24 23 22 46 46 H 1.07993 * 119.98889 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.01677 * 180.27805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5111 -2.0488 6 6 2.0268 3.3494 -1.5285 7 7 2.7112 4.0022 -0.6146 8 14 1.5818 4.1872 -3.1377 9 1 0.8137 3.2449 -3.9905 10 1 0.7543 5.3882 -2.8582 11 1 2.8233 4.5948 -3.8434 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5532 -2.3388 0.8433 15 8 2.2956 -2.7696 -0.1799 16 6 2.0699 -3.0199 2.2132 17 7 1.7199 -4.4375 2.0529 18 6 2.1274 -5.2167 3.2297 19 6 1.7477 -6.6848 3.0257 20 1 2.2535 -7.0713 2.1410 21 8 0.3334 -6.7910 2.8504 22 6 2.1652 -7.4840 4.2332 23 6 1.2576 -7.7321 5.2457 24 6 1.6402 -8.4656 6.3530 25 6 2.9311 -8.9515 6.4495 26 6 3.8387 -8.7088 5.4364 27 6 3.4580 -7.9696 4.3288 28 9 4.3459 -7.7281 3.3396 29 1 -0.3634 0.4513 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3444 0.1083 34 1 2.9857 4.9183 -0.7766 35 1 1.5611 -0.3873 2.0629 36 1 3.0797 -0.6611 1.1757 37 1 3.2601 -2.7167 -0.1359 38 1 1.5633 -2.6179 3.0906 39 1 3.1482 -2.9236 2.3402 40 1 2.1251 -4.8170 1.2103 41 1 1.6219 -4.8298 4.1144 42 1 3.2061 -5.1360 3.3631 43 1 -0.1816 -6.4647 3.6010 44 1 0.2489 -7.3535 5.1712 45 1 0.9304 -8.6587 7.1438 46 1 3.2287 -9.5248 7.3150 47 1 4.8457 -9.0922 5.5098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843066526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:40 Heat of formation + Delta-G solvation = -113.372134 kcal Electronic energy + Delta-G solvation = -27058.634937 eV Core-core repulsion = 22962.833808 eV Total energy + Delta-G solvation = -4095.801129 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.35010 -39.99274 -38.41748 -37.48158 -35.78425 -34.63874 -32.51281 -32.15421 -31.09611 -30.11214 -28.00963 -26.96282 -25.65397 -23.95465 -23.20756 -22.78386 -21.75571 -21.15590 -20.15014 -18.45621 -17.37571 -17.03793 -16.70469 -16.33745 -16.07197 -16.01592 -15.57985 -15.24930 -14.96733 -14.88642 -14.60896 -14.52919 -14.18384 -13.98114 -13.63456 -13.44630 -13.15773 -12.91316 -12.65517 -12.44343 -12.40780 -11.98580 -11.87318 -11.77718 -11.47987 -11.31432 -11.09031 -10.86125 -10.73823 -10.64787 -10.54378 -10.25796 -9.99669 -9.62673 -9.48114 -9.16770 -9.06986 -8.55661 -8.42440 -7.17234 -6.01286 -4.02046 0.60345 0.67155 3.02608 3.32796 3.39976 3.46017 3.66044 3.74503 4.03248 4.22045 4.29937 4.42925 4.47705 4.59648 4.70048 4.70231 4.78664 4.85077 4.97009 5.17841 5.27684 5.29291 5.31274 5.36488 5.42783 5.49377 5.53682 5.64150 5.67477 5.74837 5.82881 5.87002 6.07745 6.22976 6.34403 6.35388 6.43792 6.77696 6.81263 7.19426 7.28970 7.33551 7.34679 7.82622 7.97843 8.12013 8.22814 8.57574 9.06534 9.62218 11.09757 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.001796 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.037513 B =15582.926884 C =15764.237812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.284 1.284 12 C 0.025 3.975 13 C 0.115 3.885 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.028 3.972 17 N -0.673 5.673 18 C 0.033 3.967 19 C 0.154 3.846 20 H 0.110 0.890 21 O -0.536 6.536 22 C -0.150 4.150 23 C -0.083 4.083 24 C -0.127 4.127 25 C -0.092 4.092 26 C -0.152 4.152 27 C 0.106 3.894 28 F -0.136 7.136 29 H 0.008 0.992 30 H 0.074 0.926 31 H 0.048 0.952 32 H -0.011 1.011 33 H 0.028 0.972 34 H 0.260 0.740 35 H 0.028 0.972 36 H 0.068 0.932 37 H 0.366 0.634 38 H 0.077 0.923 39 H 0.031 0.969 40 H 0.350 0.650 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.372 0.628 44 H 0.134 0.866 45 H 0.131 0.869 46 H 0.133 0.867 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.033 -26.998 17.066 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.254 5.254 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.105 4.105 13 C 0.055 3.945 14 H 0.123 0.877 15 O -0.349 6.349 16 C -0.103 4.103 17 N -0.306 5.306 18 C -0.097 4.097 19 C 0.094 3.906 20 H 0.127 0.873 21 O -0.341 6.341 22 C -0.152 4.152 23 C -0.101 4.101 24 C -0.145 4.145 25 C -0.110 4.110 26 C -0.171 4.171 27 C 0.087 3.913 28 F -0.114 7.114 29 H 0.027 0.973 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.007 0.993 33 H 0.046 0.954 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.212 0.788 38 H 0.096 0.904 39 H 0.049 0.951 40 H 0.170 0.830 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.220 0.780 44 H 0.152 0.848 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.844 -27.300 16.064 31.687 hybrid contribution 1.297 1.405 0.638 2.015 sum 0.453 -25.895 16.702 30.817 Atomic orbital electron populations 1.22264 0.88925 0.99707 1.00387 1.62024 1.06899 1.17379 1.39100 1.19749 0.95233 0.81667 0.96646 1.21222 1.34544 0.96814 1.01674 0.91693 1.25005 0.95357 0.97374 0.97055 1.69970 1.38672 1.11379 1.34058 0.86429 0.78145 0.79262 0.83524 1.19586 1.21157 1.21032 1.22712 1.00354 0.93908 0.93477 1.21989 0.98365 0.90624 0.83553 0.87735 1.86622 1.22760 1.83805 1.41700 1.22706 0.98475 0.88902 1.00170 1.60281 1.64108 1.01762 1.04403 1.22610 0.98801 0.93093 0.95183 1.20654 0.82977 0.92385 0.94623 0.87267 1.86689 1.15458 1.86194 1.45714 1.20674 0.93172 1.02131 0.99176 1.20830 0.99267 0.97587 0.92397 1.21225 0.96560 0.98381 0.98303 1.21070 0.93095 0.98728 0.98144 1.21195 1.01552 1.00657 0.93716 1.17513 0.86999 0.99716 0.87106 1.91518 1.67323 1.92680 1.59901 0.97330 0.90682 0.93312 0.99309 0.95433 0.93038 0.95367 0.91350 0.78819 0.90426 0.95064 0.83031 0.90564 0.94372 0.77962 0.84823 0.85058 0.84887 0.84559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.14 60.06 0.55 1.27 16 2 N -0.53 -11.70 4.70 -244.37 -1.15 -12.84 16 3 C 0.19 5.10 4.72 -4.97 -0.02 5.08 16 4 C -0.50 -14.47 8.46 -34.44 -0.29 -14.76 16 5 H 0.06 1.86 7.12 -52.49 -0.37 1.49 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.03 0.44 4.59 -3.83 -0.02 0.43 16 13 C 0.11 1.68 3.19 -26.74 -0.09 1.59 16 14 H 0.10 1.67 6.34 -51.93 -0.33 1.34 16 15 O -0.55 -8.44 12.62 -35.23 -0.44 -8.89 16 16 C 0.03 0.32 5.39 -3.83 -0.02 0.30 16 17 N -0.67 -7.43 6.37 -113.79 -0.72 -8.15 16 18 C 0.03 0.30 5.33 -3.82 -0.02 0.28 16 19 C 0.15 1.35 3.19 -27.88 -0.09 1.26 16 20 H 0.11 1.07 7.79 -51.93 -0.40 0.66 16 21 O -0.54 -5.02 12.85 -35.23 -0.45 -5.47 16 22 C -0.15 -1.19 5.07 -104.56 -0.53 -1.72 16 23 C -0.08 -0.51 9.30 -39.59 -0.37 -0.88 16 24 C -0.13 -0.66 10.04 -39.58 -0.40 -1.06 16 25 C -0.09 -0.49 10.04 -39.59 -0.40 -0.88 16 26 C -0.15 -1.02 10.03 -39.51 -0.40 -1.42 16 27 C 0.11 0.90 7.24 -39.42 -0.29 0.62 16 28 F -0.14 -1.33 16.57 2.25 0.04 -1.29 16 29 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 1.64 6.76 -51.93 -0.35 1.28 16 31 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 36 H 0.07 1.18 7.93 -51.92 -0.41 0.77 16 37 H 0.37 4.58 9.05 45.56 0.41 4.99 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.35 4.03 8.12 -39.29 -0.32 3.71 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.37 2.25 7.32 45.56 0.33 2.58 16 44 H 0.13 0.55 6.40 -52.49 -0.34 0.21 16 45 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 46 H 0.13 0.38 8.06 -52.49 -0.42 -0.04 16 47 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -33.45 389.05 -9.51 -42.96 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.88 Total: 5.65 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.47 Total: -8.45 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -1.14 Total: -47.35 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -0.90 Total: -14.36 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.45 -9.51 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.410 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds