Wall clock time and date at job start Tue Mar 31 2020 14:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00158 * 2 1 4 4 C 1.50704 * 109.46945 * 293.95362 * 3 2 1 5 5 H 1.07999 * 119.99713 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99711 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00510 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99826 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47005 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47042 * 120.00000 * 8 6 4 11 11 H 1.48506 * 109.46737 * 239.99936 * 8 6 4 12 12 C 1.46903 * 110.99716 * 123.95327 * 2 1 3 13 13 C 1.52993 * 109.47346 * 66.04690 * 12 2 1 14 14 H 1.08997 * 109.47089 * 305.00137 * 13 12 2 15 15 O 1.42902 * 109.47273 * 64.99865 * 13 12 2 16 16 C 1.52998 * 109.47517 * 184.99715 * 13 12 2 17 17 N 1.46894 * 109.47557 * 179.97438 * 16 13 12 18 18 C 1.46900 * 111.00111 * 179.97438 * 17 16 13 19 19 C 1.53007 * 109.47096 * 180.02562 * 18 17 16 20 20 H 1.09002 * 109.46675 * 60.00006 * 19 18 17 21 21 O 1.42907 * 109.47019 * 300.00375 * 19 18 17 22 22 C 1.50697 * 109.47093 * 180.02562 * 19 18 17 23 23 C 1.38216 * 120.01502 * 94.97962 * 22 19 18 24 24 C 1.38226 * 120.02514 * 179.97438 * 23 22 19 25 25 C 1.38265 * 120.05338 * 0.02562 * 24 23 22 26 26 C 1.38176 * 120.02279 * 359.74109 * 25 24 23 27 27 C 1.38436 * 120.00925 * 274.99717 * 22 19 18 28 28 F 1.35104 * 120.02854 * 359.95937 * 27 22 19 29 29 H 1.09001 * 109.47499 * 296.04746 * 1 2 3 30 30 H 1.09000 * 109.47324 * 56.04758 * 1 2 3 31 31 H 1.08998 * 109.47216 * 176.04404 * 1 2 3 32 32 H 1.09003 * 109.47088 * 53.94895 * 3 2 1 33 33 H 1.08998 * 109.47528 * 173.95089 * 3 2 1 34 34 H 0.96992 * 120.00177 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47523 * 306.04592 * 12 2 1 36 36 H 1.09008 * 109.46777 * 186.04784 * 12 2 1 37 37 H 0.96702 * 114.00232 * 59.99665 * 15 13 12 38 38 H 1.08999 * 109.46954 * 59.99712 * 16 13 12 39 39 H 1.09003 * 109.46904 * 300.00105 * 16 13 12 40 40 H 1.00905 * 110.99892 * 56.04590 * 17 16 13 41 41 H 1.08994 * 109.46733 * 60.00489 * 18 17 16 42 42 H 1.08991 * 109.47317 * 300.00222 * 18 17 16 43 43 H 0.96703 * 113.99673 * 299.99928 * 21 19 18 44 44 H 1.08001 * 119.98628 * 0.02562 * 23 22 19 45 45 H 1.08001 * 119.97063 * 179.97438 * 24 23 22 46 46 H 1.07993 * 119.98889 * 180.02562 * 25 24 23 47 47 H 1.07999 * 120.01677 * 180.27805 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2985 5 1 1.0747 1.5111 -2.0488 6 6 2.0268 3.3494 -1.5285 7 7 2.7112 4.0022 -0.6146 8 14 1.5818 4.1872 -3.1377 9 1 0.8137 3.2449 -3.9905 10 1 0.7543 5.3882 -2.8582 11 1 2.8233 4.5948 -3.8434 12 6 1.9954 -0.7660 1.1376 13 6 1.6314 -2.2426 0.9704 14 1 0.5532 -2.3388 0.8433 15 8 2.2956 -2.7696 -0.1799 16 6 2.0699 -3.0199 2.2132 17 7 1.7199 -4.4375 2.0529 18 6 2.1274 -5.2167 3.2297 19 6 1.7477 -6.6848 3.0257 20 1 2.2535 -7.0713 2.1410 21 8 0.3334 -6.7910 2.8504 22 6 2.1652 -7.4840 4.2332 23 6 1.2576 -7.7321 5.2457 24 6 1.6402 -8.4656 6.3530 25 6 2.9311 -8.9515 6.4495 26 6 3.8387 -8.7088 5.4364 27 6 3.4580 -7.9696 4.3288 28 9 4.3459 -7.7281 3.3396 29 1 -0.3634 0.4513 0.9233 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0252 -0.0709 32 1 1.5611 1.9274 0.8309 33 1 3.0797 1.3444 0.1083 34 1 2.9857 4.9183 -0.7766 35 1 1.5611 -0.3873 2.0629 36 1 3.0797 -0.6611 1.1757 37 1 3.2601 -2.7167 -0.1359 38 1 1.5633 -2.6179 3.0906 39 1 3.1482 -2.9236 2.3402 40 1 2.1251 -4.8170 1.2103 41 1 1.6219 -4.8298 4.1144 42 1 3.2061 -5.1360 3.3631 43 1 -0.1816 -6.4647 3.6010 44 1 0.2489 -7.3535 5.1712 45 1 0.9304 -8.6587 7.1438 46 1 3.2287 -9.5248 7.3150 47 1 4.8457 -9.0922 5.5098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843066526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:40 Heat of formation + Delta-G solvation = -140.973174 kcal Electronic energy + Delta-G solvation = -27059.831808 eV Core-core repulsion = 22962.833808 eV Total energy + Delta-G solvation = -4096.998000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.98774 -40.53950 -39.62230 -38.27020 -37.26294 -35.63202 -34.63330 -32.75979 -31.60133 -31.25996 -29.38023 -28.54305 -27.05580 -25.25421 -23.93256 -23.57124 -22.72464 -22.18512 -21.76800 -19.00808 -18.58542 -18.08287 -17.61455 -17.46318 -17.24142 -16.73919 -16.70246 -16.38789 -16.13465 -15.94415 -15.77695 -15.38289 -15.37091 -15.04102 -14.80294 -14.55163 -14.13678 -13.93617 -13.78545 -13.56471 -13.35026 -13.21536 -12.93165 -12.89268 -12.71047 -12.58487 -12.52797 -12.38825 -12.27486 -12.08099 -12.01891 -11.64165 -11.42914 -11.20396 -10.71730 -10.63520 -9.96644 -9.66633 -9.42291 -8.96957 -8.21961 -6.31770 0.11485 0.21492 1.40209 1.40866 1.55086 2.39484 2.55273 2.83065 3.10352 3.23212 3.32165 3.43192 3.66629 3.69557 3.77320 3.92549 3.94208 4.06901 4.11912 4.17945 4.26350 4.34539 4.37857 4.43679 4.55100 4.59319 4.65857 4.72740 4.77320 4.78307 4.88865 5.04851 5.05715 5.14585 5.16417 5.18738 5.31290 5.35029 5.44077 5.64147 5.90190 5.91279 6.04334 6.31175 6.32761 6.62555 6.78298 6.84504 6.93308 7.38022 8.89218 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.031845 B = 0.001796 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.037513 B =15582.926884 C =15764.237812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.541 5.541 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.000 4.000 7 N -0.935 5.935 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.025 3.975 13 C 0.129 3.871 14 H 0.096 0.904 15 O -0.561 6.561 16 C 0.039 3.961 17 N -0.678 5.678 18 C 0.040 3.960 19 C 0.161 3.839 20 H 0.092 0.908 21 O -0.551 6.551 22 C -0.162 4.162 23 C -0.088 4.088 24 C -0.125 4.125 25 C -0.091 4.091 26 C -0.161 4.161 27 C 0.077 3.923 28 F -0.152 7.152 29 H 0.012 0.988 30 H 0.055 0.945 31 H 0.075 0.925 32 H -0.038 1.038 33 H 0.004 0.996 34 H 0.265 0.735 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.378 0.622 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.346 0.654 41 H 0.086 0.914 42 H 0.034 0.966 43 H 0.386 0.614 44 H 0.153 0.847 45 H 0.159 0.841 46 H 0.160 0.840 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -28.234 18.068 33.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.265 5.265 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.575 5.575 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.104 4.104 13 C 0.069 3.931 14 H 0.113 0.887 15 O -0.366 6.366 16 C -0.091 4.091 17 N -0.310 5.310 18 C -0.090 4.090 19 C 0.101 3.899 20 H 0.110 0.890 21 O -0.358 6.358 22 C -0.164 4.164 23 C -0.106 4.106 24 C -0.142 4.142 25 C -0.109 4.109 26 C -0.180 4.180 27 C 0.058 3.942 28 F -0.130 7.130 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.094 0.906 32 H -0.020 1.020 33 H 0.022 0.978 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.226 0.774 38 H 0.104 0.896 39 H 0.057 0.943 40 H 0.165 0.835 41 H 0.105 0.895 42 H 0.052 0.948 43 H 0.236 0.764 44 H 0.171 0.829 45 H 0.176 0.824 46 H 0.178 0.822 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.740 -28.559 17.088 33.326 hybrid contribution 1.568 1.707 0.417 2.355 sum -0.172 -26.851 17.505 32.054 Atomic orbital electron populations 1.22231 0.87802 1.01086 0.99705 1.61935 1.08031 1.14911 1.41666 1.19401 0.93621 0.83914 0.94960 1.21508 1.34765 0.97488 1.02387 0.92112 1.25926 0.95030 0.98039 1.00781 1.70084 1.39461 1.11884 1.36104 0.85314 0.78102 0.78152 0.78923 1.18913 1.20256 1.20310 1.22821 1.00187 0.95269 0.92131 1.21791 0.97788 0.88805 0.84734 0.88668 1.86582 1.24025 1.83704 1.42332 1.22515 0.98952 0.89024 0.98623 1.60283 1.64272 1.01496 1.04986 1.22588 0.98612 0.93139 0.94623 1.20448 0.82685 0.92159 0.94584 0.89007 1.86652 1.15798 1.86448 1.46912 1.20647 0.93452 1.02824 0.99462 1.21138 0.99798 0.97514 0.92135 1.21613 0.97037 0.97160 0.98424 1.21455 0.92866 0.98182 0.98349 1.21446 1.02583 1.00397 0.93544 1.17863 0.87301 1.01338 0.87707 1.91470 1.67872 1.93009 1.60692 0.96901 0.92651 0.90598 1.02040 0.97816 0.92661 0.94735 0.91454 0.77384 0.89589 0.94308 0.83466 0.89538 0.94771 0.76368 0.82918 0.82352 0.82194 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.14 127.69 1.17 2.78 16 2 N -0.54 -24.08 4.70 -927.04 -4.36 -28.44 16 3 C 0.21 11.32 4.72 85.56 0.40 11.72 16 4 C -0.52 -30.52 8.46 25.60 0.22 -30.30 16 5 H 0.06 3.52 7.12 -2.91 -0.02 3.50 16 6 C 0.00 0.00 5.46 84.65 0.46 0.46 16 7 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 8 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 9 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 C 0.03 0.87 4.59 86.30 0.40 1.27 16 13 C 0.13 3.64 3.19 30.59 0.10 3.74 16 14 H 0.10 2.90 6.34 -2.39 -0.02 2.89 16 15 O -0.56 -16.93 12.62 -148.98 -1.88 -18.81 16 16 C 0.04 0.85 5.39 86.30 0.47 1.32 16 17 N -0.68 -14.27 6.37 -513.91 -3.27 -17.55 16 18 C 0.04 0.69 5.33 86.31 0.46 1.15 16 19 C 0.16 2.79 3.19 29.85 0.10 2.88 16 20 H 0.09 1.87 7.79 -2.39 -0.02 1.85 16 21 O -0.55 -9.78 12.85 -148.98 -1.92 -11.70 16 22 C -0.16 -2.47 5.07 -19.82 -0.10 -2.57 16 23 C -0.09 -0.91 9.30 22.26 0.21 -0.70 16 24 C -0.12 -0.95 10.04 22.27 0.22 -0.72 16 25 C -0.09 -0.74 10.04 22.26 0.22 -0.51 16 26 C -0.16 -1.99 10.03 22.31 0.22 -1.76 16 27 C 0.08 1.31 7.24 22.38 0.16 1.47 16 28 F -0.15 -3.11 16.57 44.97 0.75 -2.36 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.05 2.42 6.76 -2.39 -0.02 2.41 16 31 H 0.08 2.63 6.37 -2.39 -0.02 2.61 16 32 H -0.04 -2.24 8.12 -2.39 -0.02 -2.26 16 33 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.03 1.17 8.12 -2.39 -0.02 1.15 16 36 H 0.07 2.34 7.93 -2.38 -0.02 2.32 16 37 H 0.38 9.22 9.05 -74.06 -0.67 8.55 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.35 7.79 8.12 -89.69 -0.73 7.06 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.39 4.02 7.32 -74.06 -0.54 3.48 16 44 H 0.15 0.87 6.40 -2.91 -0.02 0.85 16 45 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 46 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 47 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -72.53 389.05 -4.61 -77.13 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.94 Total: 20.92 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 4.70 Total: -9.78 kcal Atomic # 7 Polarization: -95.29 SS G_CDS: -7.35 Total: -102.63 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -3.80 Total: -30.51 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.75 Total: -2.36 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -72.53 -4.61 -77.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.842 kcal (2) G-P(sol) polarization free energy of solvation -72.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds