Wall clock time and date at job start Tue Mar 31 2020 14:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46751 * 180.02562 * 18 17 16 20 20 H 1.09003 * 109.47409 * 59.99809 * 19 18 17 21 21 O 1.42902 * 109.47007 * 300.00041 * 19 18 17 22 22 C 1.50701 * 109.47087 * 179.97438 * 19 18 17 23 23 C 1.38260 * 119.98651 * 264.99779 * 22 19 18 24 24 C 1.38230 * 120.05027 * 179.97438 * 23 22 19 25 25 C 1.38222 * 120.02166 * 0.02562 * 24 23 22 26 26 C 1.38436 * 119.97854 * 359.97438 * 25 24 23 27 27 F 1.35095 * 120.02912 * 180.02562 * 26 25 24 28 28 C 1.38173 * 119.98214 * 84.72638 * 22 19 18 29 29 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 30 30 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 31 31 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 32 32 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 33 33 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 34 34 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 36 36 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 37 37 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 38 38 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 39 39 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 40 40 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 41 41 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 42 42 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 43 43 H 0.96698 * 113.99798 * 300.00114 * 21 19 18 44 44 H 1.08002 * 119.97926 * 359.97438 * 23 22 19 45 45 H 1.07994 * 119.99047 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.01011 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.01708 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5905 -2.8228 2.8958 20 1 8.0612 -1.8505 2.7508 21 8 7.7993 -3.6308 1.7358 22 6 8.1984 -3.5006 4.0968 23 6 8.7796 -2.7434 5.0970 24 6 9.3371 -3.3636 6.1994 25 6 9.3145 -4.7418 6.3026 26 6 8.7329 -5.5009 5.3017 27 9 8.7098 -6.8480 5.4017 28 6 8.1697 -4.8781 4.2004 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3634 0.5940 0.8385 31 1 -0.3632 -1.0233 0.0953 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1083 34 1 2.9861 4.9182 -0.7768 35 1 1.8943 -0.1776 2.0496 36 1 1.4350 -1.6951 1.2405 37 1 3.1332 -2.7955 -0.1323 38 1 3.8797 -1.1513 3.0120 39 1 3.5677 -2.7404 2.2732 40 1 5.6864 -2.4932 1.1085 41 1 5.9303 -2.0176 4.0071 42 1 5.6182 -3.6063 3.2676 43 1 7.4065 -4.5125 1.7947 44 1 8.7980 -1.6665 5.0170 45 1 9.7904 -2.7712 6.9803 46 1 9.7498 -5.2261 7.1642 47 1 7.7121 -5.4691 3.4209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843069472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:44 Heat of formation + Delta-G solvation = -115.630387 kcal Electronic energy + Delta-G solvation = -27002.791785 eV Core-core repulsion = 22906.892731 eV Total energy + Delta-G solvation = -4095.899055 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.30890 -40.09185 -38.32593 -37.42455 -35.74918 -34.56476 -32.45329 -32.14872 -31.06645 -30.08651 -27.95649 -27.22761 -25.38968 -23.75886 -23.17159 -22.77180 -21.74098 -21.35310 -20.01726 -18.38961 -17.07031 -16.92273 -16.62696 -16.45406 -16.01956 -16.00502 -15.98609 -15.19029 -14.91475 -14.81623 -14.66187 -14.32715 -14.17481 -13.92074 -13.48350 -13.31130 -13.28033 -12.87043 -12.54100 -12.38110 -12.30613 -11.99537 -11.91042 -11.74767 -11.45299 -11.35331 -11.14811 -10.92747 -10.69575 -10.59838 -10.54964 -10.33048 -9.72718 -9.62190 -9.43505 -9.13672 -9.07988 -8.49527 -8.37994 -7.18338 -5.97791 -3.98069 0.65644 0.71410 3.05991 3.35022 3.42228 3.47517 3.63656 3.89540 4.06230 4.24294 4.34349 4.47628 4.57956 4.63747 4.73298 4.79688 4.83297 4.87941 5.00284 5.26930 5.29005 5.34686 5.37927 5.43416 5.47064 5.55693 5.58986 5.64804 5.72643 5.79717 5.83521 6.02443 6.04651 6.09068 6.35989 6.39937 6.54609 6.72360 6.88293 7.21440 7.31543 7.34571 7.38492 7.84338 8.07388 8.14303 8.24075 8.59438 9.09310 9.65660 11.13351 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.001958 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.913428 B =14296.074650 C =14815.170120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.191 3.809 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.027 3.973 13 C 0.114 3.886 14 H 0.115 0.885 15 O -0.541 6.541 16 C 0.031 3.969 17 N -0.678 5.678 18 C 0.034 3.966 19 C 0.148 3.852 20 H 0.124 0.876 21 O -0.546 6.546 22 C -0.084 4.084 23 C -0.118 4.118 24 C -0.087 4.087 25 C -0.156 4.156 26 C 0.101 3.899 27 F -0.140 7.140 28 C -0.148 4.148 29 H 0.072 0.928 30 H 0.011 0.989 31 H 0.041 0.959 32 H -0.012 1.012 33 H 0.033 0.967 34 H 0.260 0.740 35 H 0.031 0.969 36 H 0.058 0.942 37 H 0.358 0.642 38 H 0.078 0.922 39 H 0.027 0.973 40 H 0.356 0.644 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.370 0.630 44 H 0.135 0.865 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.865 -19.063 15.476 26.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.066 3.934 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.103 4.103 13 C 0.054 3.946 14 H 0.133 0.867 15 O -0.344 6.344 16 C -0.099 4.099 17 N -0.311 5.311 18 C -0.096 4.096 19 C 0.089 3.911 20 H 0.141 0.859 21 O -0.351 6.351 22 C -0.085 4.085 23 C -0.136 4.136 24 C -0.105 4.105 25 C -0.175 4.175 26 C 0.081 3.919 27 F -0.118 7.118 28 C -0.166 4.166 29 H 0.091 0.909 30 H 0.030 0.970 31 H 0.060 0.940 32 H 0.006 0.994 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.203 0.797 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.176 0.824 41 H 0.101 0.899 42 H 0.048 0.952 43 H 0.218 0.782 44 H 0.153 0.847 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.927 -17.497 14.843 25.860 hybrid contribution -1.455 -1.122 0.572 1.924 sum 10.472 -18.620 15.415 26.343 Atomic orbital electron populations 1.22186 0.88885 0.98505 1.01185 1.62057 1.06493 1.17942 1.39118 1.19805 0.95634 0.81367 0.96552 1.21186 1.34529 0.96771 1.01691 0.91867 1.24992 0.95376 0.97404 0.96973 1.69966 1.38567 1.11365 1.34017 0.86446 0.78143 0.79210 0.83645 1.19687 1.21238 1.20977 1.22666 0.95755 0.98124 0.93724 1.22029 0.94695 0.94050 0.83815 0.86726 1.86720 1.76055 1.30461 1.41153 1.22701 0.87746 0.99171 1.00316 1.60254 1.12038 1.53989 1.04855 1.22608 0.93811 0.97647 0.95570 1.20971 0.94033 0.94525 0.81618 0.85873 1.86725 1.79965 1.29386 1.39060 1.20466 0.97839 0.93069 0.97120 1.21146 0.98118 1.00734 0.93602 1.21058 0.97943 0.93560 0.97947 1.21201 1.02314 0.94709 0.99261 1.17646 1.00904 0.77004 0.96307 1.91512 1.94678 1.29399 1.96251 1.20846 1.02718 0.94978 0.98106 0.90930 0.97019 0.94010 0.99389 0.94872 0.93048 0.95106 0.92310 0.79702 0.90372 0.95471 0.82399 0.89901 0.95165 0.78247 0.84710 0.84664 0.84688 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 9.32 60.07 0.56 1.36 16 2 N -0.53 -11.56 4.66 -244.37 -1.14 -12.70 16 3 C 0.19 5.05 4.57 -4.97 -0.02 5.03 16 4 C -0.50 -14.46 8.58 -34.44 -0.30 -14.76 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 6 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 7 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.03 0.47 4.61 -3.83 -0.02 0.45 16 13 C 0.11 1.85 3.26 -26.73 -0.09 1.76 16 14 H 0.12 2.32 6.46 -51.93 -0.34 1.98 16 15 O -0.54 -8.85 12.81 -35.23 -0.45 -9.30 16 16 C 0.03 0.38 5.36 -3.82 -0.02 0.36 16 17 N -0.68 -8.11 6.50 -113.78 -0.74 -8.85 16 18 C 0.03 0.31 5.37 -3.82 -0.02 0.29 16 19 C 0.15 1.28 3.48 -27.88 -0.10 1.18 16 20 H 0.12 1.16 8.05 -51.93 -0.42 0.74 16 21 O -0.55 -5.13 12.47 -35.23 -0.44 -5.57 16 22 C -0.08 -0.66 5.00 -104.64 -0.52 -1.18 16 23 C -0.12 -0.82 9.68 -39.58 -0.38 -1.21 16 24 C -0.09 -0.54 10.04 -39.59 -0.40 -0.94 16 25 C -0.16 -1.09 10.03 -39.51 -0.40 -1.49 16 26 C 0.10 0.84 7.30 -39.42 -0.29 0.55 16 27 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 28 C -0.15 -1.15 9.31 -39.51 -0.37 -1.52 16 29 H 0.07 1.51 7.02 -51.93 -0.36 1.15 16 30 H 0.01 0.22 8.07 -51.93 -0.42 -0.20 16 31 H 0.04 0.68 7.88 -51.93 -0.41 0.27 16 32 H -0.01 -0.33 8.07 -51.93 -0.42 -0.75 16 33 H 0.03 0.94 6.34 -51.93 -0.33 0.61 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 36 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 37 H 0.36 4.32 9.05 45.56 0.41 4.73 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.36 4.42 7.68 -39.29 -0.30 4.11 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.37 2.25 7.40 45.56 0.34 2.59 16 44 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 46 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 47 H 0.13 0.82 6.62 -52.49 -0.35 0.47 16 LS Contribution 389.87 15.07 5.88 5.88 Total: -1.00 -33.51 389.87 -9.48 -42.98 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.89 Total: 6.78 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -2.45 Total: -8.66 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -1.14 Total: -47.92 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.89 Total: -14.87 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.51 -9.48 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843069472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.646 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds