Wall clock time and date at job start Tue Mar 31 2020 14:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99305 * 2 1 4 4 C 1.50702 * 109.47206 * 293.94981 * 3 2 1 5 5 H 1.07990 * 119.99891 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99588 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00136 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99737 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47118 * 0.02562 * 8 6 4 10 10 H 1.48492 * 109.46938 * 120.00335 * 8 6 4 11 11 H 1.48505 * 109.46930 * 240.00323 * 8 6 4 12 12 C 1.46899 * 110.99991 * 123.95060 * 2 1 3 13 13 C 1.52998 * 109.46858 * 163.94840 * 12 2 1 14 14 H 1.09003 * 109.47469 * 55.04211 * 13 12 2 15 15 O 1.42900 * 109.47173 * 295.04684 * 13 12 2 16 16 C 1.53000 * 109.47107 * 175.04575 * 13 12 2 17 17 N 1.46904 * 109.47085 * 184.99848 * 16 13 12 18 18 C 1.46902 * 110.99534 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.46751 * 180.02562 * 18 17 16 20 20 H 1.09003 * 109.47409 * 59.99809 * 19 18 17 21 21 O 1.42902 * 109.47007 * 300.00041 * 19 18 17 22 22 C 1.50701 * 109.47087 * 179.97438 * 19 18 17 23 23 C 1.38260 * 119.98651 * 264.99779 * 22 19 18 24 24 C 1.38230 * 120.05027 * 179.97438 * 23 22 19 25 25 C 1.38222 * 120.02166 * 0.02562 * 24 23 22 26 26 C 1.38436 * 119.97854 * 359.97438 * 25 24 23 27 27 F 1.35095 * 120.02912 * 180.02562 * 26 25 24 28 28 C 1.38173 * 119.98214 * 84.72638 * 22 19 18 29 29 H 1.08998 * 109.47439 * 65.32228 * 1 2 3 30 30 H 1.08994 * 109.47470 * 305.31641 * 1 2 3 31 31 H 1.09004 * 109.46549 * 185.31844 * 1 2 3 32 32 H 1.08997 * 109.47475 * 53.95587 * 3 2 1 33 33 H 1.09000 * 109.46537 * 173.95045 * 3 2 1 34 34 H 0.97003 * 119.99947 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47186 * 283.95255 * 12 2 1 36 36 H 1.08998 * 109.46913 * 43.95393 * 12 2 1 37 37 H 0.96698 * 114.00266 * 299.99986 * 15 13 12 38 38 H 1.08996 * 109.47256 * 305.00193 * 16 13 12 39 39 H 1.09001 * 109.46972 * 65.00325 * 16 13 12 40 40 H 1.00901 * 111.00111 * 303.95536 * 17 16 13 41 41 H 1.08997 * 109.47417 * 299.99878 * 18 17 16 42 42 H 1.08997 * 109.47488 * 60.00619 * 18 17 16 43 43 H 0.96698 * 113.99798 * 300.00114 * 21 19 18 44 44 H 1.08002 * 119.97926 * 359.97438 * 23 22 19 45 45 H 1.07994 * 119.99047 * 180.02562 * 24 23 22 46 46 H 1.08000 * 120.01011 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.01708 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0740 1.5115 -2.0485 6 6 2.0266 3.3496 -1.5284 7 7 2.7116 4.0020 -0.6148 8 14 1.5816 4.1874 -3.1377 9 1 0.8136 3.2450 -3.9905 10 1 0.7540 5.3882 -2.8582 11 1 2.8230 4.5950 -3.8433 12 6 1.9955 -0.7659 1.1376 13 6 3.4724 -1.0852 0.8977 14 1 4.0177 -0.1608 0.7072 15 8 3.5950 -1.9518 -0.2319 16 6 4.0527 -1.7741 2.1344 17 7 5.4967 -1.9729 1.9519 18 6 6.0891 -2.6340 3.1223 19 6 7.5905 -2.8228 2.8958 20 1 8.0612 -1.8505 2.7508 21 8 7.7993 -3.6308 1.7358 22 6 8.1984 -3.5006 4.0968 23 6 8.7796 -2.7434 5.0970 24 6 9.3371 -3.3636 6.1994 25 6 9.3145 -4.7418 6.3026 26 6 8.7329 -5.5009 5.3017 27 9 8.7098 -6.8480 5.4017 28 6 8.1697 -4.8781 4.2004 29 1 -0.3634 0.4290 -0.9338 30 1 -0.3634 0.5940 0.8385 31 1 -0.3632 -1.0233 0.0953 32 1 1.5610 1.9274 0.8309 33 1 3.0796 1.3445 0.1083 34 1 2.9861 4.9182 -0.7768 35 1 1.8943 -0.1776 2.0496 36 1 1.4350 -1.6951 1.2405 37 1 3.1332 -2.7955 -0.1323 38 1 3.8797 -1.1513 3.0120 39 1 3.5677 -2.7404 2.2732 40 1 5.6864 -2.4932 1.1085 41 1 5.9303 -2.0176 4.0071 42 1 5.6182 -3.6063 3.2676 43 1 7.4065 -4.5125 1.7947 44 1 8.7980 -1.6665 5.0170 45 1 9.7904 -2.7712 6.9803 46 1 9.7498 -5.2261 7.1642 47 1 7.7121 -5.4691 3.4209 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843069472.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:43 Heat of formation + Delta-G solvation = -143.526907 kcal Electronic energy + Delta-G solvation = -27004.001469 eV Core-core repulsion = 22906.892731 eV Total energy + Delta-G solvation = -4097.108738 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.94513 -40.69390 -39.57137 -38.24551 -37.22074 -35.58151 -34.59950 -32.79238 -31.63356 -31.23287 -29.43732 -28.73386 -26.65226 -25.28577 -23.99260 -23.57021 -22.82196 -22.20833 -21.65996 -19.00479 -18.62010 -17.82463 -17.66370 -17.26945 -17.15221 -16.88926 -16.63912 -16.59097 -16.19809 -16.08428 -15.69857 -15.52863 -15.24503 -14.90863 -14.74632 -14.49807 -14.10025 -13.99643 -13.85832 -13.51354 -13.29094 -13.12246 -12.91820 -12.87665 -12.73054 -12.57348 -12.53396 -12.39350 -12.30041 -12.15318 -12.09251 -11.50450 -11.33321 -11.23026 -10.72191 -10.59889 -9.99419 -9.70479 -9.36462 -8.94624 -8.19457 -6.28752 0.09978 0.18076 1.40038 1.41724 1.54985 2.41072 2.50607 2.87320 3.12788 3.19473 3.39615 3.45661 3.69728 3.71022 3.77437 3.95540 4.00164 4.10018 4.17733 4.19039 4.25077 4.35437 4.37001 4.44165 4.59670 4.61370 4.69010 4.77406 4.78512 4.81207 4.82747 5.04696 5.08183 5.10932 5.13344 5.26893 5.31783 5.32532 5.46491 5.66177 5.87240 6.00502 6.08397 6.35510 6.43763 6.66223 6.69489 6.87303 7.06009 7.40498 8.91901 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021338 B = 0.001958 C = 0.001890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.913428 B =14296.074650 C =14815.170120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.544 5.544 3 C 0.209 3.791 4 C -0.522 4.522 5 H 0.060 0.940 6 C -0.002 4.002 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.027 3.973 13 C 0.123 3.877 14 H 0.064 0.936 15 O -0.560 6.560 16 C 0.045 3.955 17 N -0.696 5.696 18 C 0.040 3.960 19 C 0.156 3.844 20 H 0.111 0.889 21 O -0.563 6.563 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.086 4.086 25 C -0.158 4.158 26 C 0.079 3.921 27 F -0.150 7.150 28 C -0.153 4.153 29 H 0.053 0.947 30 H 0.007 0.993 31 H 0.083 0.917 32 H -0.041 1.041 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.028 0.972 36 H 0.098 0.902 37 H 0.379 0.621 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.352 0.648 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.383 0.617 44 H 0.147 0.853 45 H 0.161 0.839 46 H 0.151 0.849 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -20.344 15.879 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.268 5.268 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.205 1.205 12 C -0.102 4.102 13 C 0.063 3.937 14 H 0.082 0.918 15 O -0.365 6.365 16 C -0.085 4.085 17 N -0.329 5.329 18 C -0.090 4.090 19 C 0.096 3.904 20 H 0.129 0.871 21 O -0.370 6.370 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.104 4.104 25 C -0.176 4.176 26 C 0.060 3.940 27 F -0.128 7.128 28 C -0.171 4.171 29 H 0.072 0.928 30 H 0.026 0.974 31 H 0.102 0.898 32 H -0.024 1.024 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.116 0.884 37 H 0.227 0.773 38 H 0.096 0.904 39 H 0.074 0.926 40 H 0.172 0.828 41 H 0.103 0.897 42 H 0.063 0.937 43 H 0.233 0.767 44 H 0.164 0.836 45 H 0.179 0.821 46 H 0.169 0.831 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.506 -18.821 15.262 26.824 hybrid contribution -1.304 -0.785 0.482 1.597 sum 10.201 -19.606 15.744 27.135 Atomic orbital electron populations 1.22208 0.87453 1.00880 1.00047 1.61949 1.07914 1.15201 1.41753 1.19400 0.93846 0.83826 0.94660 1.21510 1.34635 0.97425 1.02492 0.92156 1.25934 0.95109 0.98149 1.00738 1.70091 1.39447 1.11836 1.36112 0.85335 0.78062 0.78188 0.79032 1.18802 1.20221 1.20466 1.22801 0.96718 0.98826 0.91856 1.21735 0.93671 0.92852 0.85476 0.91800 1.86666 1.76662 1.31677 1.41542 1.22476 0.88185 0.99984 0.97890 1.60208 1.11928 1.55005 1.05785 1.22598 0.93990 0.98070 0.94325 1.20808 0.93664 0.94097 0.81818 0.87136 1.86687 1.80324 1.30444 1.39591 1.20391 0.98615 0.93134 0.97099 1.21413 0.97688 1.01481 0.93598 1.21362 0.97337 0.93468 0.98214 1.21482 1.01671 0.95116 0.99369 1.17899 1.02129 0.76794 0.97227 1.91483 1.94883 1.30106 1.96362 1.20983 1.02691 0.95113 0.98349 0.92801 0.97393 0.89830 1.02355 0.97668 0.92737 0.95382 0.88393 0.77309 0.90376 0.92591 0.82785 0.89725 0.93677 0.76708 0.83572 0.82110 0.83095 0.83865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.32 127.69 1.19 2.80 16 2 N -0.54 -23.67 4.66 -927.06 -4.32 -27.99 16 3 C 0.21 11.47 4.57 85.56 0.39 11.86 16 4 C -0.52 -30.72 8.58 25.60 0.22 -30.50 16 5 H 0.06 3.50 7.10 -2.92 -0.02 3.48 16 6 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 7 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 C 0.03 0.90 4.61 86.30 0.40 1.30 16 13 C 0.12 3.98 3.26 30.59 0.10 4.07 16 14 H 0.06 2.74 6.46 -2.39 -0.02 2.73 16 15 O -0.56 -17.87 12.81 -148.98 -1.91 -19.78 16 16 C 0.04 1.04 5.36 86.30 0.46 1.50 16 17 N -0.70 -16.20 6.50 -513.88 -3.34 -19.54 16 18 C 0.04 0.67 5.37 86.30 0.46 1.13 16 19 C 0.16 2.59 3.48 29.85 0.10 2.69 16 20 H 0.11 2.09 8.05 -2.39 -0.02 2.07 16 21 O -0.56 -10.22 12.47 -148.98 -1.86 -12.08 16 22 C -0.09 -1.34 5.00 -19.87 -0.10 -1.44 16 23 C -0.12 -1.56 9.68 22.27 0.22 -1.34 16 24 C -0.09 -0.90 10.04 22.26 0.22 -0.68 16 25 C -0.16 -1.96 10.03 22.31 0.22 -1.74 16 26 C 0.08 1.25 7.30 22.38 0.16 1.41 16 27 F -0.15 -2.71 17.27 44.97 0.78 -1.93 16 28 C -0.15 -2.23 9.31 22.31 0.21 -2.03 16 29 H 0.05 2.22 7.02 -2.39 -0.02 2.20 16 30 H 0.01 0.29 8.07 -2.39 -0.02 0.27 16 31 H 0.08 2.46 7.88 -2.39 -0.02 2.44 16 32 H -0.04 -2.44 8.07 -2.39 -0.02 -2.46 16 33 H 0.01 0.32 6.34 -2.39 -0.02 0.30 16 34 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.03 0.96 8.05 -2.39 -0.02 0.94 16 36 H 0.10 2.51 7.82 -2.39 -0.02 2.49 16 37 H 0.38 8.28 9.05 -74.06 -0.67 7.61 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.35 8.55 7.68 -89.69 -0.69 7.86 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.38 4.28 7.40 -74.06 -0.55 3.73 16 44 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.16 0.80 8.06 -2.91 -0.02 0.78 16 46 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 47 H 0.14 1.62 6.62 -2.91 -0.02 1.60 16 Total: -1.00 -74.32 389.87 -4.52 -78.83 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.91 Total: 22.77 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: 4.73 Total: -10.59 kcal Atomic # 7 Polarization: -97.56 SS G_CDS: -7.37 Total: -104.94 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -3.77 Total: -31.86 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.32 -4.52 -78.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843069472.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.694 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds