Wall clock time and date at job start Tue Mar 31 2020 14:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00525 * 2 1 4 4 C 1.50702 * 109.47367 * 293.95923 * 3 2 1 5 5 H 1.08000 * 120.00030 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00045 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99994 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47176 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47033 * 120.00369 * 8 6 4 11 11 H 1.48503 * 109.46997 * 240.00299 * 8 6 4 12 12 C 1.46900 * 111.00134 * 123.96041 * 2 1 3 13 13 C 1.53003 * 109.47066 * 164.00678 * 12 2 1 14 14 H 1.08998 * 109.47196 * 58.51025 * 13 12 2 15 15 O 1.42898 * 109.47435 * 298.50811 * 13 12 2 16 16 C 1.53002 * 109.47153 * 178.51012 * 13 12 2 17 17 N 1.46901 * 109.47048 * 185.00103 * 16 13 12 18 18 C 1.46906 * 110.99528 * 179.97438 * 17 16 13 19 19 C 1.53002 * 109.46823 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.47011 * 305.00469 * 19 18 17 21 21 O 1.42907 * 109.47006 * 64.99831 * 19 18 17 22 22 C 1.50695 * 109.47135 * 185.00094 * 19 18 17 23 23 C 1.38272 * 119.98799 * 279.72511 * 22 19 18 24 24 C 1.38217 * 120.04906 * 179.72674 * 23 22 19 25 25 C 1.38224 * 120.02959 * 0.54795 * 24 23 22 26 26 C 1.38434 * 119.96962 * 359.72589 * 25 24 23 27 27 F 1.35097 * 120.02555 * 180.02562 * 26 25 24 28 28 C 1.38180 * 119.98723 * 100.00199 * 22 19 18 29 29 H 1.09004 * 109.46220 * 301.52522 * 1 2 3 30 30 H 1.08996 * 109.46848 * 61.52111 * 1 2 3 31 31 H 1.08998 * 109.47115 * 181.53132 * 1 2 3 32 32 H 1.09003 * 109.46553 * 53.95679 * 3 2 1 33 33 H 1.09000 * 109.47535 * 173.95469 * 3 2 1 34 34 H 0.96998 * 119.99511 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47390 * 44.00847 * 12 2 1 36 36 H 1.08994 * 109.46975 * 284.00593 * 12 2 1 37 37 H 0.96705 * 114.00131 * 300.00116 * 15 13 12 38 38 H 1.08998 * 109.47459 * 64.99698 * 16 13 12 39 39 H 1.09007 * 109.46753 * 304.99569 * 16 13 12 40 40 H 1.00902 * 111.00016 * 56.04430 * 17 16 13 41 41 H 1.08996 * 109.46793 * 60.00203 * 18 17 16 42 42 H 1.08996 * 109.47148 * 299.99646 * 18 17 16 43 43 H 0.96696 * 113.99581 * 60.00563 * 21 19 18 44 44 H 1.08001 * 119.96771 * 359.97438 * 23 22 19 45 45 H 1.08003 * 119.98658 * 180.27814 * 24 23 22 46 46 H 1.07996 * 120.01159 * 179.70626 * 25 24 23 47 47 H 1.07993 * 120.00961 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5114 -2.0487 6 6 2.0270 3.3495 -1.5284 7 7 2.7123 4.0018 -0.6148 8 14 1.5819 4.1874 -3.1374 9 1 0.8136 3.2452 -3.9902 10 1 0.7546 5.3885 -2.8578 11 1 2.8233 4.5949 -3.8433 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0841 0.8982 14 1 4.0283 -0.1551 0.7696 15 8 3.6034 -1.8839 -0.2788 16 6 4.0308 -1.8498 2.0995 17 7 5.4755 -2.0505 1.9242 18 6 6.0469 -2.7837 3.0618 19 6 7.5493 -2.9735 2.8433 20 1 7.7180 -3.4609 1.8831 21 8 8.1965 -1.6994 2.8510 22 6 8.1132 -3.8301 3.9475 23 6 8.4033 -3.2694 5.1776 24 6 8.9152 -4.0550 6.1930 25 6 9.1484 -5.4001 5.9762 26 6 8.8636 -5.9614 4.7433 27 9 9.0906 -7.2761 4.5304 28 6 8.3455 -5.1745 3.7284 29 1 -0.3632 0.5374 0.8761 30 1 -0.3633 0.4900 -0.9033 31 1 -0.3633 -1.0273 0.0275 32 1 1.5612 1.9272 0.8310 33 1 3.0798 1.3443 0.1082 34 1 2.9869 4.9179 -0.7768 35 1 1.4357 -1.6957 1.2397 36 1 1.8935 -0.1784 2.0497 37 1 3.1333 -2.7279 -0.2350 38 1 3.5360 -2.8181 2.1750 39 1 3.8513 -1.2780 3.0100 40 1 5.9489 -1.1700 1.7873 41 1 5.5661 -3.7584 3.1443 42 1 5.8813 -2.2181 3.9787 43 1 8.0881 -1.2083 3.6769 44 1 8.2260 -2.2174 5.3463 45 1 9.1373 -3.6169 7.1549 46 1 9.5529 -6.0127 6.7683 47 1 8.1233 -5.6112 2.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843069474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:50 Heat of formation + Delta-G solvation = -114.610756 kcal Electronic energy + Delta-G solvation = -26963.157948 eV Core-core repulsion = 22867.303108 eV Total energy + Delta-G solvation = -4095.854840 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.28793 -40.09363 -38.25144 -37.39355 -35.70450 -34.55780 -32.46262 -32.29558 -30.90359 -30.06486 -27.94408 -27.22843 -25.37897 -23.71662 -23.27579 -22.82267 -21.74933 -21.32282 -19.99646 -18.31388 -17.13466 -16.77409 -16.63003 -16.48935 -16.20108 -15.98307 -15.71513 -15.20926 -14.99896 -14.76239 -14.61241 -14.27358 -14.08904 -14.00930 -13.49859 -13.38702 -13.19397 -12.80627 -12.65594 -12.44630 -12.19442 -12.04274 -11.95297 -11.75013 -11.37680 -11.33959 -11.14468 -10.92081 -10.69716 -10.60962 -10.52478 -10.33502 -9.73794 -9.53970 -9.39687 -9.15266 -9.08213 -8.47737 -8.39665 -7.18862 -5.99856 -3.99847 0.64570 0.71918 3.05537 3.34014 3.41303 3.46762 3.63662 3.87794 4.10794 4.29487 4.31753 4.46504 4.56061 4.61431 4.72831 4.74626 4.91715 4.95063 4.95999 5.26597 5.30075 5.34821 5.38296 5.40411 5.49305 5.58393 5.61428 5.64946 5.69974 5.74221 5.81907 6.01716 6.04065 6.10450 6.34152 6.39696 6.50506 6.72508 6.86195 7.23044 7.29301 7.31783 7.32971 7.83360 8.10664 8.19636 8.28549 8.58315 9.07621 9.63996 11.11395 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.001945 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.895676 B =14392.939220 C =14944.230701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.118 3.882 14 H 0.102 0.898 15 O -0.530 6.530 16 C 0.029 3.971 17 N -0.675 5.675 18 C 0.034 3.966 19 C 0.148 3.852 20 H 0.122 0.878 21 O -0.547 6.547 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.087 4.087 25 C -0.156 4.156 26 C 0.101 3.899 27 F -0.139 7.139 28 C -0.142 4.142 29 H 0.009 0.991 30 H 0.074 0.926 31 H 0.042 0.958 32 H -0.013 1.013 33 H 0.032 0.968 34 H 0.260 0.740 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.360 0.640 38 H 0.071 0.929 39 H 0.035 0.965 40 H 0.352 0.648 41 H 0.081 0.919 42 H 0.032 0.968 43 H 0.371 0.629 44 H 0.128 0.872 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.644 -18.362 16.194 26.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.058 3.942 14 H 0.119 0.881 15 O -0.332 6.332 16 C -0.101 4.101 17 N -0.307 5.307 18 C -0.096 4.096 19 C 0.088 3.912 20 H 0.139 0.861 21 O -0.352 6.352 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.105 4.105 25 C -0.175 4.175 26 C 0.081 3.919 27 F -0.118 7.118 28 C -0.160 4.160 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.005 0.995 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.205 0.795 38 H 0.090 0.910 39 H 0.053 0.947 40 H 0.171 0.829 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.219 0.781 44 H 0.146 0.854 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.340 -18.689 14.588 26.281 hybrid contribution -0.962 1.050 1.614 2.152 sum 10.378 -17.640 16.202 26.103 Atomic orbital electron populations 1.22196 0.88869 0.98874 1.00910 1.62029 1.06484 1.17839 1.39135 1.19781 0.95497 0.81460 0.96540 1.21195 1.34470 0.96747 1.01674 0.91811 1.24993 0.95368 0.97404 0.97010 1.69965 1.38650 1.11383 1.34064 0.86436 0.78155 0.79199 0.83602 1.19650 1.21239 1.20973 1.22680 0.95972 0.98182 0.93559 1.21869 0.94503 0.94061 0.83785 0.88070 1.86702 1.75392 1.33079 1.38061 1.22737 0.88726 1.00426 0.98243 1.60296 1.03153 1.27143 1.40113 1.22613 0.94404 1.00049 0.92535 1.20942 0.89998 0.83132 0.97095 0.86072 1.86728 1.76705 1.30183 1.41574 1.20447 0.98098 0.93987 0.95929 1.20982 1.00142 1.00387 0.92634 1.20995 0.97373 0.92731 0.99393 1.21196 1.03449 0.96528 0.96292 1.17695 1.01011 0.78216 0.94944 1.91516 1.92424 1.32413 1.95405 1.21028 1.01690 0.93736 0.99594 0.97221 0.90767 0.93873 0.99485 0.95053 0.93063 0.92132 0.95372 0.79493 0.91017 0.94724 0.82875 0.90095 0.94979 0.78085 0.85419 0.84776 0.84684 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.33 60.06 0.56 1.34 16 2 N -0.53 -11.51 4.60 -244.37 -1.12 -12.63 16 3 C 0.19 5.05 4.57 -4.98 -0.02 5.02 16 4 C -0.50 -14.38 8.54 -34.44 -0.29 -14.68 16 5 H 0.06 1.82 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.03 0.44 4.63 -3.82 -0.02 0.43 16 13 C 0.12 1.91 3.17 -26.73 -0.08 1.83 16 14 H 0.10 1.96 6.55 -51.93 -0.34 1.62 16 15 O -0.53 -9.18 13.18 -35.23 -0.46 -9.65 16 16 C 0.03 0.35 5.32 -3.82 -0.02 0.33 16 17 N -0.67 -7.95 6.45 -113.77 -0.73 -8.68 16 18 C 0.03 0.30 5.34 -3.82 -0.02 0.28 16 19 C 0.15 1.27 3.45 -27.88 -0.10 1.17 16 20 H 0.12 1.15 8.00 -51.93 -0.42 0.74 16 21 O -0.55 -5.13 12.71 -35.23 -0.45 -5.58 16 22 C -0.08 -0.65 4.97 -104.63 -0.52 -1.17 16 23 C -0.12 -0.81 9.32 -39.58 -0.37 -1.17 16 24 C -0.09 -0.52 10.04 -39.59 -0.40 -0.92 16 25 C -0.16 -1.08 10.03 -39.51 -0.40 -1.48 16 26 C 0.10 0.86 7.30 -39.42 -0.29 0.57 16 27 F -0.14 -1.32 17.27 2.25 0.04 -1.28 16 28 C -0.14 -1.16 9.65 -39.51 -0.38 -1.54 16 29 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 30 H 0.07 1.55 6.90 -51.93 -0.36 1.19 16 31 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 32 H -0.01 -0.35 8.11 -51.93 -0.42 -0.77 16 33 H 0.03 0.88 6.38 -51.93 -0.33 0.54 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 36 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 37 H 0.36 4.82 9.05 45.56 0.41 5.23 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.35 4.48 8.29 -39.29 -0.33 4.15 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.37 2.21 7.49 45.56 0.34 2.56 16 44 H 0.13 0.57 6.77 -52.49 -0.36 0.22 16 45 H 0.13 0.49 8.06 -52.48 -0.42 0.06 16 46 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.14 1.00 8.04 -52.49 -0.42 0.58 16 LS Contribution 391.16 15.07 5.89 5.89 Total: -1.00 -33.49 391.16 -9.49 -42.98 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.92 Total: 6.73 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.45 Total: -8.56 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.12 Total: -47.55 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.91 Total: -15.23 kcal Atomic # 9 Polarization: -1.32 SS G_CDS: 0.04 Total: -1.28 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.49 -9.49 -42.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843069474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.632 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds