Wall clock time and date at job start Tue Mar 31 2020 14:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00525 * 2 1 4 4 C 1.50702 * 109.47367 * 293.95923 * 3 2 1 5 5 H 1.08000 * 120.00030 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00045 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99994 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99936 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47176 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47033 * 120.00369 * 8 6 4 11 11 H 1.48503 * 109.46997 * 240.00299 * 8 6 4 12 12 C 1.46900 * 111.00134 * 123.96041 * 2 1 3 13 13 C 1.53003 * 109.47066 * 164.00678 * 12 2 1 14 14 H 1.08998 * 109.47196 * 58.51025 * 13 12 2 15 15 O 1.42898 * 109.47435 * 298.50811 * 13 12 2 16 16 C 1.53002 * 109.47153 * 178.51012 * 13 12 2 17 17 N 1.46901 * 109.47048 * 185.00103 * 16 13 12 18 18 C 1.46906 * 110.99528 * 179.97438 * 17 16 13 19 19 C 1.53002 * 109.46823 * 179.97438 * 18 17 16 20 20 H 1.08997 * 109.47011 * 305.00469 * 19 18 17 21 21 O 1.42907 * 109.47006 * 64.99831 * 19 18 17 22 22 C 1.50695 * 109.47135 * 185.00094 * 19 18 17 23 23 C 1.38272 * 119.98799 * 279.72511 * 22 19 18 24 24 C 1.38217 * 120.04906 * 179.72674 * 23 22 19 25 25 C 1.38224 * 120.02959 * 0.54795 * 24 23 22 26 26 C 1.38434 * 119.96962 * 359.72589 * 25 24 23 27 27 F 1.35097 * 120.02555 * 180.02562 * 26 25 24 28 28 C 1.38180 * 119.98723 * 100.00199 * 22 19 18 29 29 H 1.09004 * 109.46220 * 301.52522 * 1 2 3 30 30 H 1.08996 * 109.46848 * 61.52111 * 1 2 3 31 31 H 1.08998 * 109.47115 * 181.53132 * 1 2 3 32 32 H 1.09003 * 109.46553 * 53.95679 * 3 2 1 33 33 H 1.09000 * 109.47535 * 173.95469 * 3 2 1 34 34 H 0.96998 * 119.99511 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47390 * 44.00847 * 12 2 1 36 36 H 1.08994 * 109.46975 * 284.00593 * 12 2 1 37 37 H 0.96705 * 114.00131 * 300.00116 * 15 13 12 38 38 H 1.08998 * 109.47459 * 64.99698 * 16 13 12 39 39 H 1.09007 * 109.46753 * 304.99569 * 16 13 12 40 40 H 1.00902 * 111.00016 * 56.04430 * 17 16 13 41 41 H 1.08996 * 109.46793 * 60.00203 * 18 17 16 42 42 H 1.08996 * 109.47148 * 299.99646 * 18 17 16 43 43 H 0.96696 * 113.99581 * 60.00563 * 21 19 18 44 44 H 1.08001 * 119.96771 * 359.97438 * 23 22 19 45 45 H 1.08003 * 119.98658 * 180.27814 * 24 23 22 46 46 H 1.07996 * 120.01159 * 179.70626 * 25 24 23 47 47 H 1.07993 * 120.00961 * 0.02562 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.6370 2.0472 -1.2984 5 1 1.0746 1.5114 -2.0487 6 6 2.0270 3.3495 -1.5284 7 7 2.7123 4.0018 -0.6148 8 14 1.5819 4.1874 -3.1374 9 1 0.8136 3.2452 -3.9902 10 1 0.7546 5.3885 -2.8578 11 1 2.8233 4.5949 -3.8433 12 6 1.9955 -0.7661 1.1375 13 6 3.4728 -1.0841 0.8982 14 1 4.0283 -0.1551 0.7696 15 8 3.6034 -1.8839 -0.2788 16 6 4.0308 -1.8498 2.0995 17 7 5.4755 -2.0505 1.9242 18 6 6.0469 -2.7837 3.0618 19 6 7.5493 -2.9735 2.8433 20 1 7.7180 -3.4609 1.8831 21 8 8.1965 -1.6994 2.8510 22 6 8.1132 -3.8301 3.9475 23 6 8.4033 -3.2694 5.1776 24 6 8.9152 -4.0550 6.1930 25 6 9.1484 -5.4001 5.9762 26 6 8.8636 -5.9614 4.7433 27 9 9.0906 -7.2761 4.5304 28 6 8.3455 -5.1745 3.7284 29 1 -0.3632 0.5374 0.8761 30 1 -0.3633 0.4900 -0.9033 31 1 -0.3633 -1.0273 0.0275 32 1 1.5612 1.9272 0.8310 33 1 3.0798 1.3443 0.1082 34 1 2.9869 4.9179 -0.7768 35 1 1.4357 -1.6957 1.2397 36 1 1.8935 -0.1784 2.0497 37 1 3.1333 -2.7279 -0.2350 38 1 3.5360 -2.8181 2.1750 39 1 3.8513 -1.2780 3.0100 40 1 5.9489 -1.1700 1.7873 41 1 5.5661 -3.7584 3.1443 42 1 5.8813 -2.2181 3.9787 43 1 8.0881 -1.2083 3.6769 44 1 8.2260 -2.2174 5.3463 45 1 9.1373 -3.6169 7.1549 46 1 9.5529 -6.0127 6.7683 47 1 8.1233 -5.6112 2.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843069474.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:15:50 Heat of formation + Delta-G solvation = -142.514989 kcal Electronic energy + Delta-G solvation = -26964.367966 eV Core-core repulsion = 22867.303108 eV Total energy + Delta-G solvation = -4097.064858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.94018 -40.68886 -39.51312 -38.22045 -37.15582 -35.60805 -34.59546 -32.92366 -31.49501 -31.19271 -29.43841 -28.71929 -26.64047 -25.26524 -23.86281 -23.78778 -22.88624 -22.13895 -21.62627 -18.92552 -18.60194 -17.94497 -17.54849 -17.17709 -17.10598 -16.85759 -16.67320 -16.63325 -16.24938 -16.00232 -15.72127 -15.60109 -15.15549 -14.81207 -14.70393 -14.61169 -14.11461 -14.01263 -13.85649 -13.49105 -13.24124 -13.11413 -12.92772 -12.85365 -12.64858 -12.60124 -12.57067 -12.52514 -12.30342 -12.15856 -11.97125 -11.50007 -11.30246 -11.22233 -10.64759 -10.60142 -9.99342 -9.70849 -9.36242 -8.93761 -8.20297 -6.29120 0.09668 0.18416 1.39758 1.41491 1.54726 2.40741 2.50951 2.86522 3.12119 3.18335 3.39097 3.52702 3.69217 3.76518 3.79664 3.94289 3.98887 4.07651 4.15941 4.20734 4.26013 4.39024 4.40743 4.47216 4.57389 4.60081 4.69335 4.72604 4.76253 4.78492 4.88835 5.04740 5.08149 5.12119 5.12610 5.25214 5.31446 5.31811 5.44951 5.65911 5.87193 5.99848 6.08093 6.32431 6.36502 6.66548 6.72672 6.86870 7.15635 7.40083 8.91013 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.021889 B = 0.001945 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.895676 B =14392.939220 C =14944.230701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.544 5.544 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.059 0.941 15 O -0.553 6.553 16 C 0.043 3.957 17 N -0.688 5.688 18 C 0.040 3.960 19 C 0.156 3.844 20 H 0.106 0.894 21 O -0.565 6.565 22 C -0.091 4.091 23 C -0.124 4.124 24 C -0.085 4.085 25 C -0.157 4.157 26 C 0.077 3.923 27 F -0.150 7.150 28 C -0.153 4.153 29 H 0.008 0.992 30 H 0.053 0.947 31 H 0.083 0.917 32 H -0.041 1.041 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.098 0.902 36 H 0.027 0.973 37 H 0.378 0.622 38 H 0.094 0.906 39 H 0.042 0.958 40 H 0.343 0.657 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.386 0.614 44 H 0.150 0.850 45 H 0.163 0.837 46 H 0.152 0.848 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.197 -19.158 17.146 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.268 5.268 3 C 0.083 3.917 4 C -0.560 4.560 5 H 0.078 0.922 6 C -0.199 4.199 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.205 1.205 12 C -0.103 4.103 13 C 0.064 3.936 14 H 0.077 0.923 15 O -0.359 6.359 16 C -0.087 4.087 17 N -0.319 5.319 18 C -0.089 4.089 19 C 0.096 3.904 20 H 0.124 0.876 21 O -0.372 6.372 22 C -0.092 4.092 23 C -0.142 4.142 24 C -0.103 4.103 25 C -0.176 4.176 26 C 0.058 3.942 27 F -0.129 7.129 28 C -0.172 4.172 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.101 0.899 32 H -0.024 1.024 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.045 0.955 37 H 0.226 0.774 38 H 0.112 0.888 39 H 0.060 0.940 40 H 0.161 0.839 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.236 0.764 44 H 0.167 0.833 45 H 0.180 0.820 46 H 0.169 0.831 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.878 -19.519 15.561 27.230 hybrid contribution -0.800 1.256 1.367 2.021 sum 10.078 -18.263 16.928 26.863 Atomic orbital electron populations 1.22215 0.87476 1.01133 0.99846 1.61927 1.07881 1.15180 1.41787 1.19382 0.93802 0.83841 0.94626 1.21517 1.34598 0.97406 1.02504 0.92196 1.25918 0.95121 0.98138 1.00710 1.70083 1.39473 1.11844 1.36079 0.85343 0.78064 0.78187 0.79076 1.18858 1.20217 1.20476 1.22807 0.96880 0.98829 0.91761 1.21678 0.93598 0.93108 0.85195 0.92310 1.86650 1.75999 1.34277 1.38946 1.22535 0.89076 1.00848 0.96205 1.60292 1.02936 1.26840 1.41880 1.22612 0.94403 0.99956 0.91969 1.20753 0.89805 0.82970 0.96831 0.87636 1.86695 1.76896 1.30676 1.42943 1.20365 0.98900 0.93606 0.96295 1.21305 0.99202 1.01581 0.92074 1.21348 0.96299 0.92215 1.00404 1.21485 1.02781 0.97288 0.96001 1.17945 1.02344 0.77950 0.95917 1.91481 1.92683 1.33202 1.95560 1.21120 1.02104 0.94169 0.99795 0.97318 0.92793 0.89866 1.02364 0.97672 0.92743 0.88411 0.95471 0.77448 0.88814 0.93982 0.83857 0.89539 0.93585 0.76445 0.83273 0.81950 0.83067 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.33 127.69 1.19 2.77 16 2 N -0.54 -23.56 4.60 -927.06 -4.27 -27.82 16 3 C 0.21 11.40 4.57 85.56 0.39 11.79 16 4 C -0.52 -30.54 8.54 25.60 0.22 -30.32 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 7 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 8 Si 0.97 45.50 29.54 68.60 2.03 47.53 16 9 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.03 0.87 4.63 86.30 0.40 1.27 16 13 C 0.12 4.02 3.17 30.60 0.10 4.11 16 14 H 0.06 2.40 6.55 -2.39 -0.02 2.39 16 15 O -0.55 -18.92 13.18 -148.98 -1.96 -20.88 16 16 C 0.04 0.99 5.32 86.30 0.46 1.45 16 17 N -0.69 -15.72 6.45 -513.87 -3.31 -19.04 16 18 C 0.04 0.66 5.34 86.30 0.46 1.12 16 19 C 0.16 2.58 3.45 29.85 0.10 2.69 16 20 H 0.11 2.05 8.00 -2.39 -0.02 2.03 16 21 O -0.56 -10.23 12.71 -148.98 -1.89 -12.12 16 22 C -0.09 -1.32 4.97 -19.87 -0.10 -1.42 16 23 C -0.12 -1.34 9.32 22.27 0.21 -1.14 16 24 C -0.08 -0.80 10.04 22.26 0.22 -0.58 16 25 C -0.16 -1.92 10.03 22.31 0.22 -1.70 16 26 C 0.08 1.28 7.30 22.37 0.16 1.45 16 27 F -0.15 -2.88 17.27 44.97 0.78 -2.11 16 28 C -0.15 -2.48 9.65 22.31 0.22 -2.26 16 29 H 0.01 0.32 8.13 -2.38 -0.02 0.30 16 30 H 0.05 2.24 6.90 -2.39 -0.02 2.22 16 31 H 0.08 2.47 7.97 -2.39 -0.02 2.46 16 32 H -0.04 -2.42 8.11 -2.39 -0.02 -2.44 16 33 H 0.01 0.31 6.38 -2.39 -0.02 0.29 16 34 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 35 H 0.10 2.53 7.88 -2.39 -0.02 2.51 16 36 H 0.03 0.92 8.05 -2.39 -0.02 0.90 16 37 H 0.38 9.47 9.05 -74.05 -0.67 8.80 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.34 8.84 8.29 -89.69 -0.74 8.10 16 41 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.39 4.08 7.49 -74.06 -0.56 3.52 16 44 H 0.15 0.90 6.77 -2.91 -0.02 0.88 16 45 H 0.16 0.59 8.06 -2.91 -0.02 0.56 16 46 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 47 H 0.14 2.09 8.04 -2.91 -0.02 2.07 16 Total: -1.00 -74.07 391.16 -4.60 -78.67 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -0.97 Total: 23.00 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 4.72 Total: -10.38 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -7.30 Total: -103.71 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -3.86 Total: -33.00 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -74.07 -4.60 -78.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843069474.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.845 kcal (2) G-P(sol) polarization free energy of solvation -74.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds