Wall clock time and date at job start Tue Mar 31 2020 14:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47146 * 2 1 4 4 C 1.52994 * 109.46979 * 239.99838 * 2 1 3 5 5 O 1.45202 * 109.46758 * 119.99544 * 2 1 3 6 6 C 1.34230 * 116.99836 * 60.00621 * 5 2 1 7 7 O 1.20833 * 119.99930 * 359.97438 * 6 5 2 8 8 C 1.50697 * 120.00262 * 180.27336 * 6 5 2 9 9 C 1.50707 * 115.54873 * 325.39137 * 8 6 5 10 10 O 1.20819 * 120.00199 * 214.41841 * 9 8 6 11 11 O 1.34231 * 119.99756 * 34.41301 * 9 8 6 12 12 C 1.45199 * 116.99746 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46907 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47207 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.08008 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31505 * 120.00017 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46854 * 60.00010 * 19 17 15 21 21 H 1.48494 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47187 * 300.00437 * 19 17 15 23 23 C 1.52995 * 117.50079 * 111.09656 * 8 6 5 24 24 C 1.52996 * 60.00133 * 107.49431 * 23 8 6 25 25 C 1.53001 * 117.49737 * 252.51323 * 24 23 8 26 26 C 1.52992 * 117.50107 * 107.49038 * 24 23 8 27 27 H 1.08998 * 109.47036 * 300.00110 * 1 2 3 28 28 H 1.08999 * 109.46711 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47633 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47371 * 299.99664 * 3 2 1 32 32 H 1.09005 * 109.47538 * 59.99436 * 3 2 1 33 33 H 1.09001 * 109.47516 * 299.99981 * 4 2 1 34 34 H 1.08999 * 109.47211 * 60.00536 * 4 2 1 35 35 H 1.09004 * 109.47317 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47029 * 300.00106 * 12 11 9 37 37 H 1.09001 * 109.46959 * 60.00372 * 12 11 9 38 38 H 1.08994 * 109.47520 * 300.00443 * 13 12 11 39 39 H 1.09001 * 109.46950 * 60.00437 * 13 12 11 40 40 H 1.08998 * 109.46922 * 300.00295 * 14 13 12 41 41 H 1.09001 * 109.46765 * 60.00377 * 14 13 12 42 42 H 0.97006 * 120.00243 * 179.97438 * 18 17 15 43 43 H 1.09004 * 117.49940 * 214.97965 * 23 8 6 44 44 H 1.09002 * 117.50246 * 359.97438 * 23 8 6 45 45 H 1.09002 * 109.47355 * 128.62132 * 25 24 23 46 46 H 1.08997 * 109.47144 * 248.62186 * 25 24 23 47 47 H 1.08998 * 109.47277 * 8.62077 * 25 24 23 48 48 H 1.09001 * 109.47587 * 351.37558 * 26 24 23 49 49 H 1.08997 * 109.47577 * 111.38206 * 26 24 23 50 50 H 1.08998 * 109.47415 * 231.37954 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5082 8 6 2.1126 -2.7417 2.5471 9 6 3.4872 -2.3939 3.0575 10 8 4.1888 -3.2527 3.5371 11 8 3.9322 -1.1298 2.9793 12 6 5.2659 -0.8678 3.4899 13 6 5.5961 0.6160 3.3159 14 6 7.0013 0.8923 3.8545 15 6 7.3264 2.3539 3.6837 16 1 6.6029 3.0193 3.2361 17 6 8.5473 2.8416 4.0987 18 7 9.4285 2.0314 4.6432 19 14 8.9500 4.6535 3.8876 20 1 7.9632 5.4706 4.6386 21 1 10.3143 4.9214 4.4091 22 1 8.8927 5.0088 2.4469 23 6 1.0534 -3.1333 3.5793 24 6 1.6627 -4.1992 2.6663 25 6 0.7809 -4.7600 1.5488 26 6 2.6425 -5.1918 3.2951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 5.3077 -1.1281 4.5475 37 1 5.9902 -1.4678 2.9391 38 1 5.5544 0.8759 2.2582 39 1 4.8719 1.2164 3.8665 40 1 7.0426 0.6325 4.9122 41 1 7.7259 0.2919 3.3043 42 1 10.2877 2.3744 4.9349 43 1 1.3507 -3.1394 4.6280 44 1 0.0244 -2.8313 3.3842 45 1 1.3144 -4.7000 0.6002 46 1 0.5390 -5.8007 1.7644 47 1 -0.1391 -4.1788 1.4856 48 1 2.8749 -4.8779 4.3128 49 1 2.1920 -6.1841 3.3148 50 1 3.5589 -5.2206 2.7057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850127288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:23 Heat of formation + Delta-G solvation = -161.634670 kcal Electronic energy + Delta-G solvation = -29526.718391 eV Core-core repulsion = 25519.991995 eV Total energy + Delta-G solvation = -4006.726396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58729 -40.25521 -38.60032 -36.78213 -35.99400 -34.21722 -33.94268 -31.72533 -30.22218 -27.67666 -27.56374 -27.44408 -27.28165 -25.80112 -23.61737 -22.54368 -21.12721 -20.35344 -19.92273 -19.11286 -18.07968 -16.97531 -16.55642 -16.45320 -16.08515 -15.91642 -15.25347 -14.80131 -14.48596 -14.46284 -14.20018 -13.98255 -13.83662 -13.66757 -13.45712 -13.04485 -12.59718 -12.36930 -12.33607 -12.21769 -12.17469 -12.07493 -12.00754 -11.93814 -11.85048 -11.63267 -11.49659 -11.34199 -10.95249 -10.76221 -10.67472 -10.64418 -10.60104 -10.46521 -10.35684 -10.02864 -9.82676 -9.70005 -9.46844 -9.17010 -8.38285 -6.03214 -4.06160 1.71076 2.16795 2.46733 2.72340 3.24637 3.32203 3.36602 3.39042 4.04548 4.20734 4.36155 4.43009 4.55913 4.62977 4.65792 4.78327 4.79073 5.11906 5.24611 5.32716 5.35401 5.38705 5.42508 5.57264 5.58663 5.58766 5.62464 5.62748 5.69580 5.70179 5.71833 5.76067 5.81036 5.93749 6.02467 6.06472 6.09480 6.12866 6.21906 6.44573 6.51207 6.56491 6.84318 7.00193 7.60658 7.66560 7.72192 7.89115 7.95217 8.36560 8.99857 9.57976 11.08230 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003269 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.158311 B = 8562.886534 C =10311.733066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 C -0.142 4.142 4 C -0.183 4.183 5 O -0.320 6.320 6 C 0.510 3.490 7 O -0.495 6.495 8 C -0.157 4.157 9 C 0.498 3.502 10 O -0.498 6.498 11 O -0.334 6.334 12 C 0.068 3.932 13 C -0.106 4.106 14 C 0.025 3.975 15 C -0.521 4.521 16 H 0.057 0.943 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.117 4.117 24 C -0.052 4.052 25 C -0.108 4.108 26 C -0.111 4.111 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.019 0.981 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.061 0.939 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.987 -10.855 -7.669 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.081 3.919 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.236 6.236 6 C 0.353 3.647 7 O -0.384 6.384 8 C -0.160 4.160 9 C 0.340 3.660 10 O -0.386 6.386 11 O -0.250 6.250 12 C -0.005 4.005 13 C -0.144 4.144 14 C -0.012 4.012 15 C -0.559 4.559 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.154 4.154 24 C -0.052 4.052 25 C -0.165 4.165 26 C -0.167 4.167 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.037 0.963 42 H 0.072 0.928 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.754 -11.179 -7.718 24.805 hybrid contribution 0.549 1.215 -0.123 1.339 sum -20.205 -9.964 -7.842 23.854 Atomic orbital electron populations 1.22491 0.94187 1.04404 1.02783 1.22245 0.94129 0.92685 0.82869 1.21849 1.03062 0.92064 1.02919 1.22493 1.02130 1.02766 0.96650 1.86730 1.68718 1.23706 1.44460 1.21688 0.76885 0.81006 0.85098 1.90578 1.35617 1.69896 1.42357 1.20880 0.94420 1.01494 0.99160 1.21718 0.86595 0.81764 0.75961 1.90676 1.56805 1.49106 1.42060 1.86605 1.35924 1.27947 1.74490 1.23548 0.78298 0.99928 0.98736 1.21734 1.00772 0.89915 1.01956 1.19046 0.88740 0.97043 0.96414 1.21132 1.00577 0.93847 1.40379 0.92484 1.25021 0.96344 0.97889 0.95164 1.69951 1.07260 1.35012 1.41171 0.86619 0.77412 0.85242 0.78511 1.20168 1.21273 1.20186 1.23488 0.96082 0.99871 0.95955 1.21946 0.98333 0.86207 0.98759 1.21484 0.98680 0.99945 0.96368 1.21502 0.97571 0.96195 1.01473 0.91946 0.91084 0.90009 0.90825 0.90513 0.91236 0.90028 0.91070 0.91727 0.91501 0.91591 0.92152 0.92125 0.96283 0.96303 0.92845 0.86382 0.86556 0.90920 0.91997 0.91300 0.91113 0.91990 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 8.37 37.16 0.31 -1.45 16 2 C 0.12 1.32 1.13 -90.62 -0.10 1.22 16 3 C -0.14 -1.49 8.85 37.15 0.33 -1.16 16 4 C -0.18 -1.98 8.37 37.15 0.31 -1.67 16 5 O -0.32 -4.45 8.44 -45.54 -0.38 -4.84 16 6 C 0.51 6.71 6.78 36.00 0.24 6.95 16 7 O -0.50 -6.29 8.62 -18.76 -0.16 -6.46 16 8 C -0.16 -2.00 2.58 -156.81 -0.41 -2.40 16 9 C 0.50 7.85 7.47 36.01 0.27 8.12 16 10 O -0.50 -8.46 12.86 -18.74 -0.24 -8.70 16 11 O -0.33 -5.80 8.77 -45.55 -0.40 -6.20 16 12 C 0.07 1.26 5.47 37.16 0.20 1.47 16 13 C -0.11 -2.22 5.53 -26.73 -0.15 -2.36 16 14 C 0.02 0.63 4.97 -27.88 -0.14 0.50 16 15 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 16 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.81 13.28 55.43 0.74 -26.07 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.12 -1.11 9.23 -26.74 -0.25 -1.36 16 24 C -0.05 -0.54 2.70 -154.51 -0.42 -0.96 16 25 C -0.11 -0.99 8.09 37.16 0.30 -0.69 16 26 C -0.11 -1.15 8.09 37.15 0.30 -0.85 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.87 5.89 -51.93 -0.31 0.56 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.96 5.89 -51.93 -0.31 0.65 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 37 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.12 1.03 8.05 -51.93 -0.42 0.61 16 44 H 0.12 0.90 8.05 -51.93 -0.42 0.48 16 45 H 0.07 0.76 7.26 -51.93 -0.38 0.38 16 46 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 47 H 0.07 0.63 7.02 -51.93 -0.36 0.26 16 48 H 0.07 0.79 7.02 -51.93 -0.36 0.43 16 49 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 50 H 0.07 0.90 7.26 -51.93 -0.38 0.52 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -31.17 399.20 -7.85 -39.02 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -8.79 Total: -1.19 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 0.40 Total: -8.07 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.19 Total: -26.20 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.17 -7.85 -39.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850127288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.620 kcal (2) G-P(sol) polarization free energy of solvation -31.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds