Wall clock time and date at job start Tue Mar 31 2020 14:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47146 * 2 1 4 4 C 1.52994 * 109.46979 * 239.99838 * 2 1 3 5 5 O 1.45202 * 109.46758 * 119.99544 * 2 1 3 6 6 C 1.34230 * 116.99836 * 60.00621 * 5 2 1 7 7 O 1.20833 * 119.99930 * 359.97438 * 6 5 2 8 8 C 1.50697 * 120.00262 * 180.27336 * 6 5 2 9 9 C 1.50707 * 115.54873 * 325.39137 * 8 6 5 10 10 O 1.20819 * 120.00199 * 214.41841 * 9 8 6 11 11 O 1.34231 * 119.99756 * 34.41301 * 9 8 6 12 12 C 1.45199 * 116.99746 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46907 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47207 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.08008 * 120.00281 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99941 * 180.02562 * 15 14 13 18 18 N 1.31505 * 120.00017 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 120.00043 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46854 * 60.00010 * 19 17 15 21 21 H 1.48494 * 109.46921 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47187 * 300.00437 * 19 17 15 23 23 C 1.52995 * 117.50079 * 111.09656 * 8 6 5 24 24 C 1.52996 * 60.00133 * 107.49431 * 23 8 6 25 25 C 1.53001 * 117.49737 * 252.51323 * 24 23 8 26 26 C 1.52992 * 117.50107 * 107.49038 * 24 23 8 27 27 H 1.08998 * 109.47036 * 300.00110 * 1 2 3 28 28 H 1.08999 * 109.46711 * 59.99932 * 1 2 3 29 29 H 1.09001 * 109.47439 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47633 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47371 * 299.99664 * 3 2 1 32 32 H 1.09005 * 109.47538 * 59.99436 * 3 2 1 33 33 H 1.09001 * 109.47516 * 299.99981 * 4 2 1 34 34 H 1.08999 * 109.47211 * 60.00536 * 4 2 1 35 35 H 1.09004 * 109.47317 * 180.02562 * 4 2 1 36 36 H 1.08998 * 109.47029 * 300.00106 * 12 11 9 37 37 H 1.09001 * 109.46959 * 60.00372 * 12 11 9 38 38 H 1.08994 * 109.47520 * 300.00443 * 13 12 11 39 39 H 1.09001 * 109.46950 * 60.00437 * 13 12 11 40 40 H 1.08998 * 109.46922 * 300.00295 * 14 13 12 41 41 H 1.09001 * 109.46765 * 60.00377 * 14 13 12 42 42 H 0.97006 * 120.00243 * 179.97438 * 18 17 15 43 43 H 1.09004 * 117.49940 * 214.97965 * 23 8 6 44 44 H 1.09002 * 117.50246 * 359.97438 * 23 8 6 45 45 H 1.09002 * 109.47355 * 128.62132 * 25 24 23 46 46 H 1.08997 * 109.47144 * 248.62186 * 25 24 23 47 47 H 1.08998 * 109.47277 * 8.62077 * 25 24 23 48 48 H 1.09001 * 109.47587 * 351.37558 * 26 24 23 49 49 H 1.08997 * 109.47577 * 111.38206 * 26 24 23 50 50 H 1.08998 * 109.47415 * 231.37954 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9560 -2.5025 0.5082 8 6 2.1126 -2.7417 2.5471 9 6 3.4872 -2.3939 3.0575 10 8 4.1888 -3.2527 3.5371 11 8 3.9322 -1.1298 2.9793 12 6 5.2659 -0.8678 3.4899 13 6 5.5961 0.6160 3.3159 14 6 7.0013 0.8923 3.8545 15 6 7.3264 2.3539 3.6837 16 1 6.6029 3.0193 3.2361 17 6 8.5473 2.8416 4.0987 18 7 9.4285 2.0314 4.6432 19 14 8.9500 4.6535 3.8876 20 1 7.9632 5.4706 4.6386 21 1 10.3143 4.9214 4.4091 22 1 8.8927 5.0088 2.4469 23 6 1.0534 -3.1333 3.5793 24 6 1.6627 -4.1992 2.6663 25 6 0.7809 -4.7600 1.5488 26 6 2.6425 -5.1918 3.2951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 5.3077 -1.1281 4.5475 37 1 5.9902 -1.4678 2.9391 38 1 5.5544 0.8759 2.2582 39 1 4.8719 1.2164 3.8665 40 1 7.0426 0.6325 4.9122 41 1 7.7259 0.2919 3.3043 42 1 10.2877 2.3744 4.9349 43 1 1.3507 -3.1394 4.6280 44 1 0.0244 -2.8313 3.3842 45 1 1.3144 -4.7000 0.6002 46 1 0.5390 -5.8007 1.7644 47 1 -0.1391 -4.1788 1.4856 48 1 2.8749 -4.8779 4.3128 49 1 2.1920 -6.1841 3.3148 50 1 3.5589 -5.2206 2.7057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850127288.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:22 Heat of formation + Delta-G solvation = -175.833630 kcal Electronic energy + Delta-G solvation = -29527.334104 eV Core-core repulsion = 25519.991995 eV Total energy + Delta-G solvation = -4007.342109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59886 -41.40253 -39.63594 -37.92108 -37.14950 -35.95366 -35.06882 -33.69573 -31.14424 -29.07887 -28.46329 -28.35949 -28.25720 -26.91548 -25.26881 -23.84467 -22.17479 -22.15555 -20.80431 -20.13934 -19.21641 -18.61435 -17.94154 -17.74676 -17.42133 -16.98826 -16.49996 -16.25358 -15.82892 -15.46305 -15.35347 -15.09002 -14.74836 -14.51300 -14.48926 -14.29402 -14.04251 -13.82952 -13.71538 -13.39981 -13.16812 -13.04019 -12.94863 -12.85563 -12.82787 -12.78156 -12.53795 -12.49232 -12.42162 -12.30866 -12.22307 -12.06629 -11.75814 -11.58285 -11.51753 -11.41611 -11.36109 -11.30249 -10.93446 -10.73417 -10.56786 -8.21582 -6.33120 0.68773 1.05635 1.40741 1.44492 1.46331 1.52578 1.56146 2.34121 2.41262 3.12237 3.14962 3.30417 3.43892 3.54876 3.74238 3.81514 3.96664 3.98207 3.99852 4.03759 4.18688 4.39840 4.53133 4.57579 4.62409 4.69543 4.77448 4.78572 4.79440 4.80980 4.84911 4.87730 4.91528 4.97769 4.99335 5.03050 5.06134 5.12209 5.24699 5.26055 5.28997 5.34364 5.45374 5.51902 5.57073 5.63347 5.79748 6.19134 6.56336 6.72971 6.82225 7.36260 8.90466 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003269 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.158311 B = 8562.886534 C =10311.733066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 C -0.140 4.140 4 C -0.179 4.179 5 O -0.342 6.342 6 C 0.508 3.492 7 O -0.494 6.494 8 C -0.181 4.181 9 C 0.495 3.505 10 O -0.515 6.515 11 O -0.339 6.339 12 C 0.078 3.922 13 C -0.089 4.089 14 C 0.028 3.972 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.000 4.000 18 N -0.933 5.933 19 Si 0.967 3.033 20 H -0.265 1.265 21 H -0.284 1.284 22 H -0.266 1.266 23 C -0.096 4.096 24 C -0.046 4.046 25 C -0.102 4.102 26 C -0.109 4.109 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.066 0.934 40 H -0.002 1.002 41 H -0.005 1.005 42 H 0.265 0.735 43 H 0.127 0.873 44 H 0.140 0.860 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.060 0.940 49 H 0.089 0.911 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.232 -10.291 -8.306 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.070 3.930 3 C -0.197 4.197 4 C -0.236 4.236 5 O -0.258 6.258 6 C 0.352 3.648 7 O -0.383 6.383 8 C -0.183 4.183 9 C 0.338 3.662 10 O -0.404 6.404 11 O -0.254 6.254 12 C 0.005 3.995 13 C -0.127 4.127 14 C -0.009 4.009 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.198 4.198 18 N -0.573 5.573 19 Si 0.791 3.209 20 H -0.190 1.190 21 H -0.209 1.209 22 H -0.191 1.191 23 C -0.133 4.133 24 C -0.047 4.047 25 C -0.159 4.159 26 C -0.165 4.165 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.073 0.927 43 H 0.145 0.855 44 H 0.158 0.842 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.090 0.910 48 H 0.079 0.921 49 H 0.108 0.892 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.024 -10.624 -8.366 26.701 hybrid contribution 1.234 0.962 0.063 1.566 sum -21.790 -9.661 -8.303 25.240 Atomic orbital electron populations 1.22428 0.92664 1.04101 1.03907 1.22529 0.95378 0.92810 0.82247 1.21877 1.01852 0.91885 1.04092 1.22460 1.01182 1.02420 0.97567 1.86715 1.69265 1.24177 1.45675 1.21720 0.76990 0.80917 0.85200 1.90574 1.35721 1.69829 1.42171 1.21032 0.93395 1.03382 1.00538 1.22340 0.87669 0.80777 0.75409 1.90670 1.57589 1.49195 1.42955 1.86596 1.34773 1.29388 1.74681 1.23175 0.79354 0.98283 0.98719 1.21408 0.97975 0.91621 1.01702 1.18917 0.91056 0.96002 0.94938 1.21579 1.01099 0.95016 1.40419 0.91731 1.25993 0.96153 1.03029 0.94611 1.70090 1.07766 1.37365 1.42124 0.85465 0.77326 0.79062 0.79006 1.18970 1.20914 1.19056 1.23729 0.96175 0.97632 0.95715 1.22128 0.98104 0.85104 0.99323 1.21461 0.98084 1.01342 0.95017 1.21473 0.96942 0.97759 1.00357 0.91766 0.89007 0.90943 0.92690 0.87902 0.91500 0.91130 0.88762 0.93148 0.91507 0.92187 0.91911 0.91568 0.98390 0.98632 0.92671 0.85504 0.84239 0.92479 0.89666 0.91022 0.92098 0.89245 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 8.37 71.98 0.60 -2.44 16 2 C 0.11 2.30 1.13 -10.80 -0.01 2.29 16 3 C -0.14 -2.79 8.85 71.98 0.64 -2.15 16 4 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 5 O -0.34 -9.40 8.44 -45.40 -0.38 -9.79 16 6 C 0.51 13.05 6.78 71.23 0.48 13.54 16 7 O -0.49 -12.07 8.62 21.94 0.19 -11.88 16 8 C -0.18 -4.47 2.58 -53.67 -0.14 -4.61 16 9 C 0.49 15.71 7.47 71.24 0.53 16.24 16 10 O -0.51 -17.80 12.86 21.99 0.28 -17.51 16 11 O -0.34 -11.91 8.77 -45.42 -0.40 -12.31 16 12 C 0.08 2.99 5.47 71.98 0.39 3.38 16 13 C -0.09 -3.81 5.53 30.60 0.17 -3.64 16 14 C 0.03 1.49 4.97 29.85 0.15 1.64 16 15 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 16 H 0.06 3.48 7.74 -2.91 -0.02 3.46 16 17 C 0.00 0.00 5.46 84.66 0.46 0.46 16 18 N -0.93 -56.93 13.28 21.45 0.28 -56.65 16 19 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 20 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.10 -1.62 9.23 30.59 0.28 -1.34 16 24 C -0.05 -0.89 2.70 -52.19 -0.14 -1.03 16 25 C -0.10 -1.65 8.09 71.98 0.58 -1.07 16 26 C -0.11 -2.14 8.09 71.98 0.58 -1.56 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.42 5.89 -2.39 -0.01 1.40 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 33 H 0.07 1.62 5.89 -2.39 -0.01 1.61 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.07 2.54 8.13 -2.39 -0.02 2.52 16 37 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 38 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 43 H 0.13 1.94 8.05 -2.38 -0.02 1.92 16 44 H 0.14 1.73 8.05 -2.39 -0.02 1.71 16 45 H 0.06 1.12 7.26 -2.39 -0.02 1.10 16 46 H 0.08 0.99 7.92 -2.39 -0.02 0.97 16 47 H 0.07 1.13 7.02 -2.39 -0.02 1.11 16 48 H 0.06 1.31 7.02 -2.39 -0.02 1.30 16 49 H 0.09 1.25 7.92 -2.39 -0.02 1.23 16 50 H 0.05 1.25 7.26 -2.39 -0.02 1.24 16 Total: -1.00 -68.07 399.20 8.32 -59.75 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: 0.90 Total: 16.45 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.42 Total: -14.06 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.31 Total: -51.50 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.07 8.32 -59.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850127288.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.085 kcal (2) G-P(sol) polarization free energy of solvation -68.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds