Wall clock time and date at job start Tue Mar 31 2020 15:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47530 * 2 1 4 4 C 1.52997 * 109.47005 * 239.99567 * 2 1 3 5 5 O 1.45205 * 109.47090 * 119.99582 * 2 1 3 6 6 C 1.34231 * 116.99678 * 59.99750 * 5 2 1 7 7 O 1.20824 * 120.00306 * 0.02562 * 6 5 2 8 8 C 1.50704 * 119.99834 * 179.97438 * 6 5 2 9 9 H 1.08996 * 109.47232 * 300.00587 * 8 6 5 10 10 C 1.50697 * 109.46820 * 179.97438 * 8 6 5 11 11 O 1.20817 * 120.00232 * 0.02562 * 10 8 6 12 12 O 1.34231 * 119.99636 * 179.97438 * 10 8 6 13 13 C 1.45201 * 117.00050 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47226 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47348 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99559 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00210 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99957 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47444 * 89.99898 * 19 17 15 21 21 H 1.48500 * 109.47220 * 209.99847 * 19 17 15 22 22 H 1.48495 * 109.47331 * 329.99906 * 19 17 15 23 23 C 1.53004 * 109.46723 * 60.00341 * 8 6 5 24 24 C 1.54894 * 110.48128 * 183.24155 * 23 8 6 25 25 C 1.55238 * 102.58338 * 156.67574 * 24 23 8 26 26 C 1.54266 * 104.23333 * 322.08174 * 25 24 23 27 27 C 1.53869 * 106.59800 * 23.61579 * 26 25 24 28 28 H 1.09003 * 109.46766 * 300.00632 * 1 2 3 29 29 H 1.09000 * 109.46699 * 59.99781 * 1 2 3 30 30 H 1.08995 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47773 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46727 * 300.00002 * 3 2 1 33 33 H 1.08997 * 109.47291 * 59.99250 * 3 2 1 34 34 H 1.09000 * 109.47389 * 300.00157 * 4 2 1 35 35 H 1.08997 * 109.47447 * 60.00295 * 4 2 1 36 36 H 1.09008 * 109.47023 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47383 * 300.00232 * 13 12 10 38 38 H 1.08996 * 109.47103 * 59.99990 * 13 12 10 39 39 H 1.09009 * 109.47246 * 299.99936 * 14 13 12 40 40 H 1.08996 * 109.47410 * 59.99784 * 14 13 12 41 41 H 0.96996 * 119.99882 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.43542 * 60.70003 * 23 8 6 43 43 H 1.08996 * 110.75388 * 275.05927 * 24 23 8 44 44 H 1.08993 * 110.76071 * 38.44153 * 24 23 8 45 45 H 1.09005 * 110.46917 * 203.39204 * 25 24 23 46 46 H 1.09006 * 110.46947 * 80.77225 * 25 24 23 47 47 H 1.08999 * 110.03060 * 264.32313 * 26 25 24 48 48 H 1.09006 * 110.06829 * 142.91691 * 26 25 24 49 49 H 1.09001 * 110.02983 * 240.71432 * 27 26 25 50 50 H 1.08996 * 110.07773 * 119.30576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9566 -2.5027 0.5080 8 6 2.1182 -2.7436 2.5438 9 1 3.2077 -2.7725 2.5593 10 6 1.5786 -4.1491 2.4759 11 8 0.8880 -4.4867 1.5439 12 8 1.8663 -5.0261 3.4505 13 6 1.3132 -6.3622 3.3193 14 6 1.7453 -7.2129 4.5153 15 6 1.1717 -8.5998 4.3788 16 1 0.5598 -8.8493 3.5246 17 6 1.4282 -9.5500 5.3444 18 7 2.1737 -9.2461 6.3843 19 14 0.7166 -11.2688 5.1755 20 1 1.6705 -12.1285 4.4297 21 1 0.4839 -11.8430 6.5251 22 1 -0.5703 -11.2015 4.4376 23 6 1.6080 -2.0629 3.8155 24 6 2.1402 -2.7945 5.0728 25 6 2.0653 -1.6918 6.1629 26 6 2.4741 -0.4004 5.4247 27 6 2.1833 -0.6363 3.9323 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 0.2252 -6.3038 3.2896 38 1 1.6777 -6.8176 2.3985 39 1 2.8334 -7.2714 4.5454 40 1 1.3805 -6.7574 5.4359 41 1 2.3545 -9.9147 7.0634 42 1 0.5183 -2.0365 3.8221 43 1 1.4996 -3.6384 5.3288 44 1 3.1694 -3.1207 4.9232 45 1 2.7643 -1.9068 6.9712 46 1 1.0494 -1.6055 6.5486 47 1 3.5365 -0.2065 5.5722 48 1 1.8867 0.4417 5.7910 49 1 3.1046 -0.5569 3.3553 50 1 1.4546 0.0906 3.5736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850130000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:23 Heat of formation + Delta-G solvation = -199.182602 kcal Electronic energy + Delta-G solvation = -29488.789600 eV Core-core repulsion = 25480.435004 eV Total energy + Delta-G solvation = -4008.354597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.33377 -39.87908 -38.12308 -37.15619 -35.84689 -34.29472 -33.36118 -32.28637 -30.18810 -28.67413 -27.66171 -27.61582 -26.70583 -25.14089 -23.30236 -21.30404 -20.58376 -20.34623 -20.14502 -19.52298 -17.89260 -16.75809 -16.64391 -16.45660 -16.13402 -15.86490 -15.72109 -15.18733 -14.80493 -14.50045 -14.36176 -14.17063 -13.80981 -13.35284 -13.28238 -12.96765 -12.72084 -12.50984 -12.36235 -12.30343 -12.15330 -12.12840 -11.85219 -11.51717 -11.36952 -11.20911 -11.18931 -11.08861 -11.03153 -10.89401 -10.72152 -10.66627 -10.64516 -10.53427 -10.44710 -10.18332 -9.81047 -9.61756 -9.49598 -9.28018 -8.44355 -6.10762 -4.14782 2.13503 2.21710 2.55775 3.26375 3.28676 3.35029 3.40104 4.23751 4.38476 4.39883 4.46922 4.51291 4.60605 4.66066 4.71346 4.95518 5.08694 5.16715 5.21570 5.26068 5.28931 5.43628 5.45780 5.47856 5.51092 5.53138 5.57948 5.60610 5.63302 5.69633 5.74164 5.92588 5.94814 6.04398 6.08162 6.10270 6.10996 6.13114 6.25819 6.38180 6.40666 6.42633 6.64411 6.97636 7.55759 7.62273 7.77358 7.87149 8.19496 8.27312 8.90739 9.49686 11.00677 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.002973 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.093888 B = 9414.283288 C =10806.857427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.117 3.883 3 C -0.139 4.139 4 C -0.185 4.185 5 O -0.344 6.344 6 C 0.466 3.534 7 O -0.458 6.458 8 C -0.072 4.072 9 H 0.139 0.861 10 C 0.457 3.543 11 O -0.477 6.477 12 O -0.349 6.349 13 C 0.075 3.925 14 C 0.027 3.973 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.081 4.081 24 C -0.115 4.115 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.112 4.112 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.074 0.926 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.910 24.350 -7.384 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.081 3.919 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.263 6.263 6 C 0.306 3.694 7 O -0.341 6.341 8 C -0.092 4.092 9 H 0.157 0.843 10 C 0.297 3.703 11 O -0.362 6.362 12 O -0.265 6.265 13 C 0.003 3.997 14 C -0.010 4.010 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.099 4.099 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.161 4.161 27 C -0.149 4.149 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.526 23.987 -7.787 25.265 hybrid contribution -0.448 -1.060 -0.310 1.192 sum 1.078 22.926 -8.097 24.338 Atomic orbital electron populations 1.22494 0.94068 1.04955 1.02586 1.22165 0.94421 0.92160 0.83126 1.21834 1.02179 0.92580 1.02969 1.22503 1.01656 1.03401 0.96628 1.86566 1.70045 1.24793 1.44866 1.22685 0.78772 0.81021 0.86886 1.90734 1.32718 1.69003 1.41651 1.20751 1.04492 0.90085 0.93874 0.84339 1.22494 0.79337 0.87259 0.81255 1.90776 1.34101 1.78492 1.32864 1.86533 1.69584 1.24425 1.45974 1.23669 0.97635 0.75997 1.02413 1.19152 0.97975 0.92615 0.91261 1.20987 1.32372 0.95265 1.07821 0.92301 1.24966 0.95046 0.99035 0.95032 1.69968 1.37565 1.34624 1.10683 0.86488 0.79558 0.83933 0.77441 1.20489 1.21051 1.19725 1.21960 1.00875 0.95662 0.91438 1.22668 1.02603 0.97636 0.92288 1.22428 1.01502 0.94416 0.97960 1.22145 1.01204 0.97937 0.94842 1.22187 1.01484 0.94693 0.96545 0.91997 0.91171 0.89657 0.91471 0.90493 0.91449 0.89647 0.91140 0.91994 0.92333 0.92351 0.95361 0.95312 0.92725 0.89963 0.89724 0.90373 0.91327 0.91723 0.91776 0.92124 0.90737 0.91509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.12 1.12 1.13 -90.62 -0.10 1.02 16 3 C -0.14 -0.92 8.85 37.16 0.33 -0.59 16 4 C -0.18 -1.82 8.37 37.16 0.31 -1.51 16 5 O -0.34 -3.82 7.66 -39.26 -0.30 -4.12 16 6 C 0.47 6.40 6.53 36.01 0.24 6.63 16 7 O -0.46 -7.73 9.69 -26.86 -0.26 -7.99 16 8 C -0.07 -0.95 2.18 -92.92 -0.20 -1.16 16 9 H 0.14 1.51 8.14 -51.93 -0.42 1.08 16 10 C 0.46 8.13 7.23 36.00 0.26 8.39 16 11 O -0.48 -10.08 13.94 -26.85 -0.37 -10.45 16 12 O -0.35 -6.68 8.01 -39.26 -0.31 -6.99 16 13 C 0.08 1.66 5.40 37.16 0.20 1.86 16 14 C 0.03 0.70 5.35 -27.88 -0.15 0.55 16 15 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 19 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.08 -0.93 2.39 -88.96 -0.21 -1.14 16 24 C -0.11 -1.39 5.00 -24.55 -0.12 -1.51 16 25 C -0.13 -1.26 6.84 -24.88 -0.17 -1.43 16 26 C -0.12 -1.06 6.80 -25.62 -0.17 -1.24 16 27 C -0.11 -1.03 4.86 -25.62 -0.12 -1.15 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 1.09 5.89 -51.93 -0.31 0.78 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.40 8.14 -51.92 -0.42 -0.03 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 1.09 5.89 -51.93 -0.31 0.78 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 38 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 39 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.08 1.23 7.27 -51.93 -0.38 0.85 16 44 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.65 7.25 -51.93 -0.38 0.28 16 50 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 LS Contribution 394.09 15.07 5.94 5.94 Total: -1.00 -31.95 394.09 -8.54 -40.49 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -8.93 Total: -1.68 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.02 Total: -6.19 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.74 Total: -25.40 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -1.25 Total: -29.55 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.95 -8.54 -40.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850130000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.691 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds