Wall clock time and date at job start Tue Mar 31 2020 15:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47530 * 2 1 4 4 C 1.52997 * 109.47005 * 239.99567 * 2 1 3 5 5 O 1.45205 * 109.47090 * 119.99582 * 2 1 3 6 6 C 1.34231 * 116.99678 * 59.99750 * 5 2 1 7 7 O 1.20824 * 120.00306 * 0.02562 * 6 5 2 8 8 C 1.50704 * 119.99834 * 179.97438 * 6 5 2 9 9 H 1.08996 * 109.47232 * 300.00587 * 8 6 5 10 10 C 1.50697 * 109.46820 * 179.97438 * 8 6 5 11 11 O 1.20817 * 120.00232 * 0.02562 * 10 8 6 12 12 O 1.34231 * 119.99636 * 179.97438 * 10 8 6 13 13 C 1.45201 * 117.00050 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47226 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47348 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99559 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00210 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99957 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47444 * 89.99898 * 19 17 15 21 21 H 1.48500 * 109.47220 * 209.99847 * 19 17 15 22 22 H 1.48495 * 109.47331 * 329.99906 * 19 17 15 23 23 C 1.53004 * 109.46723 * 60.00341 * 8 6 5 24 24 C 1.54894 * 110.48128 * 183.24155 * 23 8 6 25 25 C 1.55238 * 102.58338 * 156.67574 * 24 23 8 26 26 C 1.54266 * 104.23333 * 322.08174 * 25 24 23 27 27 C 1.53869 * 106.59800 * 23.61579 * 26 25 24 28 28 H 1.09003 * 109.46766 * 300.00632 * 1 2 3 29 29 H 1.09000 * 109.46699 * 59.99781 * 1 2 3 30 30 H 1.08995 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47773 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46727 * 300.00002 * 3 2 1 33 33 H 1.08997 * 109.47291 * 59.99250 * 3 2 1 34 34 H 1.09000 * 109.47389 * 300.00157 * 4 2 1 35 35 H 1.08997 * 109.47447 * 60.00295 * 4 2 1 36 36 H 1.09008 * 109.47023 * 180.02562 * 4 2 1 37 37 H 1.08999 * 109.47383 * 300.00232 * 13 12 10 38 38 H 1.08996 * 109.47103 * 59.99990 * 13 12 10 39 39 H 1.09009 * 109.47246 * 299.99936 * 14 13 12 40 40 H 1.08996 * 109.47410 * 59.99784 * 14 13 12 41 41 H 0.96996 * 119.99882 * 180.02562 * 18 17 15 42 42 H 1.09002 * 110.43542 * 60.70003 * 23 8 6 43 43 H 1.08996 * 110.75388 * 275.05927 * 24 23 8 44 44 H 1.08993 * 110.76071 * 38.44153 * 24 23 8 45 45 H 1.09005 * 110.46917 * 203.39204 * 25 24 23 46 46 H 1.09006 * 110.46947 * 80.77225 * 25 24 23 47 47 H 1.08999 * 110.03060 * 264.32313 * 26 25 24 48 48 H 1.09006 * 110.06829 * 142.91691 * 26 25 24 49 49 H 1.09001 * 110.02983 * 240.71432 * 27 26 25 50 50 H 1.08996 * 110.07773 * 119.30576 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9683 1.3380 7 8 0.9566 -2.5027 0.5080 8 6 2.1182 -2.7436 2.5438 9 1 3.2077 -2.7725 2.5593 10 6 1.5786 -4.1491 2.4759 11 8 0.8880 -4.4867 1.5439 12 8 1.8663 -5.0261 3.4505 13 6 1.3132 -6.3622 3.3193 14 6 1.7453 -7.2129 4.5153 15 6 1.1717 -8.5998 4.3788 16 1 0.5598 -8.8493 3.5246 17 6 1.4282 -9.5500 5.3444 18 7 2.1737 -9.2461 6.3843 19 14 0.7166 -11.2688 5.1755 20 1 1.6705 -12.1285 4.4297 21 1 0.4839 -11.8430 6.5251 22 1 -0.5703 -11.2015 4.4376 23 6 1.6080 -2.0629 3.8155 24 6 2.1402 -2.7945 5.0728 25 6 2.0653 -1.6918 6.1629 26 6 2.4741 -0.4004 5.4247 27 6 2.1833 -0.6363 3.9323 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 1.6766 -1.7490 -1.2491 35 1 1.6767 -0.2076 -2.1392 36 1 3.1301 -0.7217 -1.2489 37 1 0.2252 -6.3038 3.2896 38 1 1.6777 -6.8176 2.3985 39 1 2.8334 -7.2714 4.5454 40 1 1.3805 -6.7574 5.4359 41 1 2.3545 -9.9147 7.0634 42 1 0.5183 -2.0365 3.8221 43 1 1.4996 -3.6384 5.3288 44 1 3.1694 -3.1207 4.9232 45 1 2.7643 -1.9068 6.9712 46 1 1.0494 -1.6055 6.5486 47 1 3.5365 -0.2065 5.5722 48 1 1.8867 0.4417 5.7910 49 1 3.1046 -0.5569 3.3553 50 1 1.4546 0.0906 3.5736 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850130000.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:22 Heat of formation + Delta-G solvation = -214.234501 kcal Electronic energy + Delta-G solvation = -29489.442300 eV Core-core repulsion = 25480.435004 eV Total energy + Delta-G solvation = -4009.007296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.47758 -41.22562 -39.08868 -38.30684 -37.36720 -35.45687 -35.13265 -33.39510 -32.15971 -29.52432 -28.38908 -28.26361 -27.76343 -27.03376 -24.58140 -22.99872 -22.01811 -21.36703 -20.94528 -20.52344 -19.21000 -18.49103 -17.82125 -17.65186 -17.59208 -17.16066 -17.01491 -16.52485 -16.14529 -15.76183 -15.25491 -15.13703 -14.94159 -14.63586 -14.42503 -14.36370 -14.13020 -13.58505 -13.33115 -13.22129 -13.11162 -13.02387 -12.93905 -12.83832 -12.75952 -12.58347 -12.57791 -12.40021 -12.21743 -11.97954 -11.90541 -11.85042 -11.78259 -11.62990 -11.49845 -11.42110 -11.37186 -11.29568 -11.16345 -10.77441 -10.61345 -8.27673 -6.40351 1.00406 1.08158 1.14380 1.40562 1.41454 1.53010 1.98565 2.39201 3.06757 3.18249 3.41429 3.58913 3.73778 3.80143 3.83489 3.87507 3.97202 4.01899 4.20105 4.24695 4.29132 4.56738 4.58176 4.59755 4.67416 4.68369 4.69996 4.71628 4.76514 4.83765 4.87548 4.91636 4.92486 5.12055 5.15687 5.21544 5.23741 5.26491 5.31078 5.35213 5.41144 5.47070 5.48088 5.50340 5.50684 5.59394 5.73727 6.06659 6.62869 6.72692 6.79850 7.29129 8.84705 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.016417 B = 0.002973 C = 0.002590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.093888 B = 9414.283288 C =10806.857427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.108 3.892 3 C -0.132 4.132 4 C -0.183 4.183 5 O -0.332 6.332 6 C 0.471 3.529 7 O -0.493 6.493 8 C -0.066 4.066 9 H 0.169 0.831 10 C 0.455 3.545 11 O -0.511 6.511 12 O -0.346 6.346 13 C 0.091 3.909 14 C 0.037 3.963 15 C -0.552 4.552 16 H 0.061 0.939 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.970 3.030 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.266 1.266 23 C -0.076 4.076 24 C -0.118 4.118 25 C -0.124 4.124 26 C -0.117 4.117 27 C -0.103 4.103 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.009 0.991 40 H 0.010 0.990 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 26.435 -7.715 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.073 3.927 3 C -0.189 4.189 4 C -0.240 4.240 5 O -0.250 6.250 6 C 0.313 3.687 7 O -0.379 6.379 8 C -0.085 4.085 9 H 0.186 0.814 10 C 0.297 3.703 11 O -0.399 6.399 12 O -0.262 6.262 13 C 0.017 3.983 14 C 0.000 4.000 15 C -0.590 4.590 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.794 3.206 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.190 1.190 23 C -0.095 4.095 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.154 4.154 27 C -0.140 4.140 28 H 0.087 0.913 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.028 0.972 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.092 0.908 49 H 0.104 0.896 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.124 26.109 -8.113 27.422 hybrid contribution -0.628 -1.639 -0.235 1.771 sum 1.496 24.469 -8.347 25.897 Atomic orbital electron populations 1.22467 0.94428 1.03037 1.03970 1.22522 0.94358 0.93646 0.82223 1.21852 1.02623 0.90051 1.04368 1.22482 1.02051 1.01669 0.97833 1.86560 1.69532 1.23169 1.45720 1.22675 0.78043 0.81746 0.86280 1.90751 1.34348 1.69953 1.42866 1.20874 1.05892 0.86875 0.94868 0.81429 1.23398 0.78444 0.88465 0.79950 1.90766 1.35760 1.79297 1.34046 1.86541 1.69433 1.23475 1.46783 1.23174 0.97258 0.77297 1.00537 1.18928 0.96473 0.92779 0.91844 1.21367 1.32860 0.96515 1.08234 0.92109 1.25896 0.95188 1.03412 0.94478 1.70078 1.38510 1.36255 1.11434 0.85378 0.78991 0.78478 0.77802 1.19544 1.20207 1.19019 1.21968 1.00304 0.97235 0.89993 1.22641 1.01839 0.97475 0.93637 1.22423 1.01696 0.94506 0.97518 1.22121 1.02292 0.97201 0.93805 1.22157 1.01956 0.92527 0.97399 0.91273 0.89160 0.93130 0.90773 0.88518 0.90657 0.93062 0.89127 0.91283 0.92722 0.92573 0.97244 0.97189 0.92290 0.91120 0.92959 0.90296 0.90909 0.91906 0.90430 0.90760 0.89593 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.37 71.98 0.60 -2.76 16 2 C 0.11 1.86 1.13 -10.79 -0.01 1.85 16 3 C -0.13 -1.29 8.85 71.98 0.64 -0.66 16 4 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 5 O -0.33 -6.78 7.66 -51.43 -0.39 -7.17 16 6 C 0.47 12.80 6.53 71.24 0.47 13.26 16 7 O -0.49 -17.20 9.69 29.72 0.29 -16.91 16 8 C -0.07 -1.71 2.18 -12.28 -0.03 -1.74 16 9 H 0.17 3.38 8.14 -2.39 -0.02 3.36 16 10 C 0.46 16.70 7.23 71.23 0.51 17.21 16 11 O -0.51 -22.49 13.94 29.75 0.41 -22.07 16 12 O -0.35 -13.78 8.01 -51.42 -0.41 -14.19 16 13 C 0.09 4.17 5.40 71.98 0.39 4.56 16 14 C 0.04 1.98 5.35 29.85 0.16 2.14 16 15 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.01 0.54 5.46 84.65 0.46 1.01 16 18 N -0.92 -55.06 13.29 21.45 0.28 -54.77 16 19 Si 0.97 43.98 29.54 68.60 2.03 46.00 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 C -0.08 -1.71 2.39 -9.72 -0.02 -1.73 16 24 C -0.12 -2.88 5.00 32.01 0.16 -2.72 16 25 C -0.12 -2.35 6.84 31.79 0.22 -2.13 16 26 C -0.12 -1.67 6.80 31.32 0.21 -1.45 16 27 C -0.10 -1.63 4.86 31.32 0.15 -1.47 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.05 1.32 5.89 -2.39 -0.01 1.31 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 1.33 5.89 -2.39 -0.01 1.32 16 35 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.05 2.54 8.13 -2.39 -0.02 2.52 16 38 H 0.06 2.59 8.13 -2.39 -0.02 2.57 16 39 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.05 1.60 7.27 -2.39 -0.02 1.58 16 44 H 0.08 1.88 8.06 -2.39 -0.02 1.86 16 45 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 47 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 49 H 0.09 1.20 7.25 -2.39 -0.02 1.18 16 50 H 0.07 1.10 7.98 -2.39 -0.02 1.08 16 Total: -1.00 -71.36 394.09 7.85 -63.51 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.90 Total: 14.39 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 4.75 Total: -8.78 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.28 Total: -54.77 kcal Atomic # 8 Polarization: -60.25 SS G_CDS: -0.10 Total: -60.35 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -71.36 7.85 -63.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850130000.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.723 kcal (2) G-P(sol) polarization free energy of solvation -71.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds