Wall clock time and date at job start Tue Mar 31 2020 15:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47025 * 2 1 4 4 C 1.53004 * 109.47107 * 240.00088 * 2 1 3 5 5 O 1.45198 * 109.47071 * 119.99807 * 2 1 3 6 6 C 1.34237 * 116.99708 * 60.00198 * 5 2 1 7 7 O 1.20827 * 119.99973 * 359.97438 * 6 5 2 8 8 C 1.50696 * 119.99816 * 179.97438 * 6 5 2 9 9 C 1.50708 * 112.85157 * 48.80262 * 8 6 5 10 10 O 1.20823 * 119.99930 * 129.66403 * 9 8 6 11 11 O 1.34221 * 119.99908 * 309.66865 * 9 8 6 12 12 C 1.45196 * 117.00060 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47293 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47448 * 300.00212 * 13 12 11 15 15 C 1.53003 * 109.46948 * 60.00164 * 13 12 11 16 16 C 1.50704 * 109.47074 * 179.97438 * 13 12 11 17 17 H 1.07996 * 119.99893 * 356.87241 * 16 13 12 18 18 C 1.37876 * 119.99614 * 176.85950 * 16 13 12 19 19 N 1.31504 * 120.00307 * 5.82738 * 18 16 13 20 20 Si 1.86811 * 119.99663 * 185.82053 * 18 16 13 21 21 H 1.48501 * 109.46857 * 85.03028 * 20 18 16 22 22 H 1.48499 * 109.47123 * 205.02933 * 20 18 16 23 23 H 1.48500 * 109.47075 * 325.02989 * 20 18 16 24 24 C 1.53783 * 113.61571 * 277.49598 * 8 6 5 25 25 C 1.53786 * 87.08238 * 220.01916 * 24 8 6 26 26 C 1.53781 * 113.61518 * 179.97438 * 8 6 5 27 27 H 1.08995 * 109.47158 * 300.00327 * 1 2 3 28 28 H 1.08998 * 109.46636 * 59.99981 * 1 2 3 29 29 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47302 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47626 * 300.00292 * 3 2 1 32 32 H 1.09004 * 109.46904 * 60.00032 * 3 2 1 33 33 H 1.08999 * 109.46694 * 300.00120 * 4 2 1 34 34 H 1.08997 * 109.47157 * 59.99942 * 4 2 1 35 35 H 1.08994 * 109.46712 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47257 * 300.00176 * 12 11 9 37 37 H 1.09002 * 109.47167 * 59.99932 * 12 11 9 38 38 H 1.09004 * 109.46933 * 53.82139 * 14 13 12 39 39 H 1.08993 * 109.47156 * 173.82753 * 14 13 12 40 40 H 1.09001 * 109.46893 * 293.83146 * 14 13 12 41 41 H 1.09006 * 109.46761 * 59.99942 * 15 13 12 42 42 H 1.08993 * 109.47071 * 179.97438 * 15 13 12 43 43 H 1.08997 * 109.47260 * 300.00111 * 15 13 12 44 44 H 0.97004 * 120.00063 * 179.97438 * 19 18 16 45 45 H 1.08995 * 113.61049 * 334.56994 * 24 8 6 46 46 H 1.08999 * 113.61440 * 105.47191 * 24 8 6 47 47 H 1.09001 * 113.61093 * 270.88336 * 25 24 8 48 48 H 1.08997 * 113.61130 * 139.97737 * 25 24 8 49 49 H 1.09004 * 113.61329 * 254.53284 * 26 8 6 50 50 H 1.08999 * 113.61354 * 25.34380 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5082 8 6 2.1182 -2.7437 2.5435 9 6 1.8925 -2.0046 3.8374 10 8 1.3387 -2.5555 4.7591 11 8 2.3066 -0.7343 3.9656 12 6 2.0553 -0.0845 5.2395 13 6 2.5943 1.3468 5.1970 14 6 4.1001 1.3171 4.9280 15 6 1.8922 2.1233 4.0812 16 6 2.3329 2.0215 6.5190 17 1 1.7879 1.5008 7.2925 18 6 2.7897 3.3033 6.7410 19 7 3.3520 3.9795 5.7634 20 14 2.6098 4.0794 8.4308 21 1 3.7555 3.6762 9.2851 22 1 2.5886 5.5581 8.2966 23 1 1.3422 3.6207 9.0537 24 6 3.5384 -3.3155 2.3983 25 6 3.0142 -4.5835 3.0928 26 6 1.6197 -4.1982 2.5705 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 0.9826 -0.0636 5.4314 37 1 2.5558 -0.6374 6.0344 38 1 4.2970 0.7343 4.0281 39 1 4.4646 2.3348 4.7889 40 1 4.6116 0.8606 5.7755 41 1 0.8193 2.1445 4.2729 42 1 2.2758 3.1430 4.0512 43 1 2.0808 1.6355 3.1249 44 1 3.6730 4.8815 5.9195 45 1 3.8401 -3.4774 1.3635 46 1 4.2873 -2.7773 2.9793 47 1 3.0972 -4.5522 4.1792 48 1 3.4013 -5.5078 2.6641 49 1 0.8200 -4.3724 3.2905 50 1 1.3951 -4.6012 1.5829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850950623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:22 Heat of formation + Delta-G solvation = -160.704017 kcal Electronic energy + Delta-G solvation = -30742.746188 eV Core-core repulsion = 26736.060148 eV Total energy + Delta-G solvation = -4006.686040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.50558 -40.09056 -38.37269 -36.72137 -36.22757 -34.86784 -33.98752 -31.27643 -28.39114 -27.43408 -27.32747 -25.99479 -25.64850 -25.58620 -25.05501 -22.81306 -22.03720 -19.95010 -19.10560 -18.81801 -17.98998 -16.71932 -16.53253 -16.21727 -15.82789 -15.62266 -15.52202 -14.91196 -14.75429 -14.27957 -14.19943 -13.65622 -13.16386 -13.06371 -12.81469 -12.69463 -12.45248 -12.34376 -12.12986 -11.94776 -11.90106 -11.83900 -11.67804 -11.51512 -11.45872 -11.20698 -11.10591 -10.97491 -10.93087 -10.70524 -10.68198 -10.40233 -10.31475 -10.28922 -10.12698 -9.89508 -9.83664 -9.40076 -9.31048 -8.74508 -8.35853 -6.02255 -4.12393 1.94043 2.33953 2.79666 3.04592 3.28115 3.34617 3.38297 4.00829 4.21081 4.38016 4.49526 4.57492 4.72174 4.78688 4.91872 4.96142 5.24315 5.27339 5.43534 5.47635 5.50810 5.52296 5.69118 5.70981 5.72369 5.78104 5.83858 5.84322 5.88546 6.03989 6.08215 6.08870 6.13634 6.23394 6.27808 6.46273 6.55463 6.75425 6.99906 7.01523 7.15428 7.22607 7.41095 7.64532 7.71078 7.78947 8.05077 8.09974 8.20823 8.39527 8.86974 9.52602 10.99392 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.004303 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.383227 B = 6505.361835 C = 7869.434825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.116 3.884 3 C -0.142 4.142 4 C -0.181 4.181 5 O -0.319 6.319 6 C 0.488 3.512 7 O -0.500 6.500 8 C -0.088 4.088 9 C 0.481 3.519 10 O -0.504 6.504 11 O -0.326 6.326 12 C 0.082 3.918 13 C 0.073 3.927 14 C -0.127 4.127 15 C -0.129 4.129 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.071 3.929 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.108 4.108 25 C -0.140 4.140 26 C -0.102 4.102 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.019 0.981 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.019 0.981 42 H 0.083 0.917 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.100 0.900 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.143 -11.269 -12.872 17.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.080 3.920 3 C -0.199 4.199 4 C -0.239 4.239 5 O -0.235 6.235 6 C 0.331 3.669 7 O -0.389 6.389 8 C -0.091 4.091 9 C 0.322 3.678 10 O -0.393 6.393 11 O -0.240 6.240 12 C 0.010 3.990 13 C 0.073 3.927 14 C -0.185 4.185 15 C -0.186 4.186 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.131 4.131 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.145 4.145 25 C -0.177 4.177 26 C -0.139 4.139 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.038 0.962 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.101 0.899 43 H 0.041 0.959 44 H 0.071 0.929 45 H 0.118 0.882 46 H 0.110 0.890 47 H 0.110 0.890 48 H 0.101 0.899 49 H 0.110 0.890 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.428 -11.289 -12.876 17.129 hybrid contribution -0.298 0.595 1.014 1.213 sum -0.726 -10.694 -11.862 15.987 Atomic orbital electron populations 1.22489 0.94218 1.04348 1.03008 1.22234 0.94342 0.92722 0.82690 1.21868 1.02463 0.92219 1.03395 1.22491 1.01719 1.02811 0.96840 1.86759 1.68483 1.23806 1.44462 1.22652 0.76957 0.81159 0.86150 1.90552 1.34986 1.70327 1.43041 1.21804 1.03154 0.95066 0.89057 1.22132 0.75928 0.82058 0.87654 1.90636 1.39439 1.68626 1.40602 1.86606 1.72154 1.24052 1.41212 1.23753 1.00248 0.95403 0.79618 1.18218 0.92986 0.85821 0.95713 1.21732 0.97453 1.02360 0.96916 1.21789 0.97755 1.03131 0.95955 1.20921 1.36462 0.99480 0.98349 0.92602 1.24828 0.94907 0.96686 0.96710 1.69851 1.40098 1.11214 1.30639 0.86597 0.78595 0.78229 0.84501 1.20565 1.21235 1.19998 1.22911 0.92101 0.96411 1.03085 1.22924 0.95571 0.97735 1.01514 1.22935 0.98915 0.88260 1.03781 0.91585 0.91138 0.90184 0.91300 0.90689 0.90480 0.90110 0.91138 0.91947 0.92591 0.92440 0.96217 0.90185 0.95719 0.96189 0.89879 0.95853 0.92945 0.88167 0.89035 0.89023 0.89914 0.88951 0.87488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.37 37.16 0.31 -2.03 16 2 C 0.12 1.52 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.74 8.85 37.16 0.33 -1.41 16 4 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 5 O -0.32 -5.02 8.95 -43.98 -0.39 -5.42 16 6 C 0.49 7.36 6.33 36.00 0.23 7.59 16 7 O -0.50 -7.59 11.40 -18.75 -0.21 -7.80 16 8 C -0.09 -1.26 1.27 -156.00 -0.20 -1.46 16 9 C 0.48 8.64 6.73 36.01 0.24 8.88 16 10 O -0.50 -9.91 15.58 -18.75 -0.29 -10.20 16 11 O -0.33 -6.50 7.85 -43.94 -0.34 -6.84 16 12 C 0.08 1.82 4.26 37.16 0.16 1.97 16 13 C 0.07 1.76 0.58 -155.66 -0.09 1.67 16 14 C -0.13 -3.00 8.06 37.16 0.30 -2.70 16 15 C -0.13 -3.05 8.14 37.16 0.30 -2.75 16 16 C -0.51 -13.60 8.01 -34.44 -0.28 -13.88 16 17 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 18 C 0.07 1.87 5.13 -17.82 -0.09 1.78 16 19 N -0.88 -23.61 9.46 55.43 0.52 -23.08 16 20 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.11 -1.20 7.21 -25.92 -0.19 -1.39 16 25 C -0.14 -1.43 7.76 -25.90 -0.20 -1.63 16 26 C -0.10 -1.21 6.79 -25.90 -0.18 -1.38 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.11 5.89 -51.93 -0.31 0.81 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.08 7.74 -51.93 -0.40 0.68 16 33 H 0.08 0.99 5.89 -51.93 -0.31 0.68 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.02 0.42 7.50 -51.93 -0.39 0.03 16 39 H 0.08 2.04 6.25 -51.93 -0.32 1.72 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 2.13 6.10 -51.93 -0.32 1.81 16 43 H 0.02 0.50 7.28 -51.93 -0.38 0.13 16 44 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 45 H 0.10 0.93 8.09 -51.93 -0.42 0.51 16 46 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 49 H 0.09 1.18 7.41 -51.93 -0.38 0.80 16 50 H 0.11 1.15 7.43 -51.93 -0.39 0.76 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -28.75 392.52 -7.61 -36.36 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.65 Total: 2.43 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 0.86 Total: -7.03 kcal Atomic # 7 Polarization: -23.61 SS G_CDS: 0.52 Total: -23.08 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -1.24 Total: -30.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.75 -7.61 -36.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.342 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds