Wall clock time and date at job start Tue Mar 31 2020 15:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47025 * 2 1 4 4 C 1.53004 * 109.47107 * 240.00088 * 2 1 3 5 5 O 1.45198 * 109.47071 * 119.99807 * 2 1 3 6 6 C 1.34237 * 116.99708 * 60.00198 * 5 2 1 7 7 O 1.20827 * 119.99973 * 359.97438 * 6 5 2 8 8 C 1.50696 * 119.99816 * 179.97438 * 6 5 2 9 9 C 1.50708 * 112.85157 * 48.80262 * 8 6 5 10 10 O 1.20823 * 119.99930 * 129.66403 * 9 8 6 11 11 O 1.34221 * 119.99908 * 309.66865 * 9 8 6 12 12 C 1.45196 * 117.00060 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47293 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47448 * 300.00212 * 13 12 11 15 15 C 1.53003 * 109.46948 * 60.00164 * 13 12 11 16 16 C 1.50704 * 109.47074 * 179.97438 * 13 12 11 17 17 H 1.07996 * 119.99893 * 356.87241 * 16 13 12 18 18 C 1.37876 * 119.99614 * 176.85950 * 16 13 12 19 19 N 1.31504 * 120.00307 * 5.82738 * 18 16 13 20 20 Si 1.86811 * 119.99663 * 185.82053 * 18 16 13 21 21 H 1.48501 * 109.46857 * 85.03028 * 20 18 16 22 22 H 1.48499 * 109.47123 * 205.02933 * 20 18 16 23 23 H 1.48500 * 109.47075 * 325.02989 * 20 18 16 24 24 C 1.53783 * 113.61571 * 277.49598 * 8 6 5 25 25 C 1.53786 * 87.08238 * 220.01916 * 24 8 6 26 26 C 1.53781 * 113.61518 * 179.97438 * 8 6 5 27 27 H 1.08995 * 109.47158 * 300.00327 * 1 2 3 28 28 H 1.08998 * 109.46636 * 59.99981 * 1 2 3 29 29 H 1.09003 * 109.46831 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47302 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47626 * 300.00292 * 3 2 1 32 32 H 1.09004 * 109.46904 * 60.00032 * 3 2 1 33 33 H 1.08999 * 109.46694 * 300.00120 * 4 2 1 34 34 H 1.08997 * 109.47157 * 59.99942 * 4 2 1 35 35 H 1.08994 * 109.46712 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47257 * 300.00176 * 12 11 9 37 37 H 1.09002 * 109.47167 * 59.99932 * 12 11 9 38 38 H 1.09004 * 109.46933 * 53.82139 * 14 13 12 39 39 H 1.08993 * 109.47156 * 173.82753 * 14 13 12 40 40 H 1.09001 * 109.46893 * 293.83146 * 14 13 12 41 41 H 1.09006 * 109.46761 * 59.99942 * 15 13 12 42 42 H 1.08993 * 109.47071 * 179.97438 * 15 13 12 43 43 H 1.08997 * 109.47260 * 300.00111 * 15 13 12 44 44 H 0.97004 * 120.00063 * 179.97438 * 19 18 16 45 45 H 1.08995 * 113.61049 * 334.56994 * 24 8 6 46 46 H 1.08999 * 113.61440 * 105.47191 * 24 8 6 47 47 H 1.09001 * 113.61093 * 270.88336 * 25 24 8 48 48 H 1.08997 * 113.61130 * 139.97737 * 25 24 8 49 49 H 1.09004 * 113.61329 * 254.53284 * 26 8 6 50 50 H 1.08999 * 113.61354 * 25.34380 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3378 7 8 0.9559 -2.5025 0.5082 8 6 2.1182 -2.7437 2.5435 9 6 1.8925 -2.0046 3.8374 10 8 1.3387 -2.5555 4.7591 11 8 2.3066 -0.7343 3.9656 12 6 2.0553 -0.0845 5.2395 13 6 2.5943 1.3468 5.1970 14 6 4.1001 1.3171 4.9280 15 6 1.8922 2.1233 4.0812 16 6 2.3329 2.0215 6.5190 17 1 1.7879 1.5008 7.2925 18 6 2.7897 3.3033 6.7410 19 7 3.3520 3.9795 5.7634 20 14 2.6098 4.0794 8.4308 21 1 3.7555 3.6762 9.2851 22 1 2.5886 5.5581 8.2966 23 1 1.3422 3.6207 9.0537 24 6 3.5384 -3.3155 2.3983 25 6 3.0142 -4.5835 3.0928 26 6 1.6197 -4.1982 2.5705 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7216 -1.2490 36 1 0.9826 -0.0636 5.4314 37 1 2.5558 -0.6374 6.0344 38 1 4.2970 0.7343 4.0281 39 1 4.4646 2.3348 4.7889 40 1 4.6116 0.8606 5.7755 41 1 0.8193 2.1445 4.2729 42 1 2.2758 3.1430 4.0512 43 1 2.0808 1.6355 3.1249 44 1 3.6730 4.8815 5.9195 45 1 3.8401 -3.4774 1.3635 46 1 4.2873 -2.7773 2.9793 47 1 3.0972 -4.5522 4.1792 48 1 3.4013 -5.5078 2.6641 49 1 0.8200 -4.3724 3.2905 50 1 1.3951 -4.6012 1.5829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850950623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:20:21 Heat of formation + Delta-G solvation = -172.556872 kcal Electronic energy + Delta-G solvation = -30743.260166 eV Core-core repulsion = 26736.060148 eV Total energy + Delta-G solvation = -4007.200018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68909 -41.40094 -39.61752 -38.14180 -37.54978 -36.63822 -35.04362 -33.26735 -29.56376 -28.37277 -28.30174 -27.54012 -27.47813 -27.02824 -26.81320 -24.07832 -23.18340 -20.96959 -20.78681 -20.33695 -19.17112 -18.06798 -17.86392 -17.66239 -17.49981 -16.99215 -16.82307 -16.53311 -15.89115 -15.48521 -15.30558 -14.93147 -14.71921 -14.62124 -14.48717 -13.66477 -13.59517 -13.53557 -13.34860 -13.29344 -13.15350 -12.98773 -12.91645 -12.84236 -12.80950 -12.74241 -12.62522 -12.48916 -12.30368 -12.15861 -12.10276 -11.94306 -11.73403 -11.63364 -11.56269 -11.37715 -11.27957 -11.17106 -10.95336 -10.71855 -10.37885 -8.04149 -6.20730 0.70639 1.05115 1.43559 1.45125 1.52619 1.65907 1.66988 2.45392 2.96087 3.19630 3.22450 3.50761 3.58976 3.68616 3.75402 3.81606 3.97134 4.22595 4.24681 4.26994 4.56688 4.59830 4.60239 4.61963 4.62889 4.77474 4.78066 4.83070 4.86114 4.87519 4.88767 4.91954 4.99105 5.06479 5.10680 5.22524 5.24713 5.25894 5.26423 5.34728 5.35515 5.49105 5.53886 5.65952 5.66576 6.08136 6.19045 6.37473 6.57913 6.69441 6.83438 7.46587 8.95931 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.004303 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.383227 B = 6505.361835 C = 7869.434825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.104 3.896 3 C -0.140 4.140 4 C -0.173 4.173 5 O -0.340 6.340 6 C 0.487 3.513 7 O -0.503 6.503 8 C -0.100 4.100 9 C 0.479 3.521 10 O -0.525 6.525 11 O -0.331 6.331 12 C 0.094 3.906 13 C 0.065 3.935 14 C -0.113 4.113 15 C -0.113 4.113 16 C -0.536 4.536 17 H 0.047 0.953 18 C 0.032 3.968 19 N -0.896 5.896 20 Si 0.949 3.051 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.275 1.275 24 C -0.100 4.100 25 C -0.129 4.129 26 C -0.097 4.097 27 H 0.047 0.953 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.033 0.967 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.011 0.989 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.262 0.738 45 H 0.126 0.874 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.117 0.883 49 H 0.078 0.922 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 -12.214 -14.237 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.069 3.931 3 C -0.196 4.196 4 C -0.230 4.230 5 O -0.256 6.256 6 C 0.330 3.670 7 O -0.392 6.392 8 C -0.102 4.102 9 C 0.322 3.678 10 O -0.415 6.415 11 O -0.245 6.245 12 C 0.021 3.979 13 C 0.065 3.935 14 C -0.171 4.171 15 C -0.171 4.171 16 C -0.574 4.574 17 H 0.066 0.934 18 C -0.168 4.168 19 N -0.534 5.534 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.200 1.200 24 C -0.138 4.138 25 C -0.166 4.166 26 C -0.134 4.134 27 H 0.066 0.934 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.144 0.856 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.135 0.865 49 H 0.097 0.903 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.164 -12.242 -14.250 18.788 hybrid contribution -0.524 0.885 1.391 1.730 sum -0.360 -11.357 -12.859 17.160 Atomic orbital electron populations 1.22464 0.94256 1.03591 1.03404 1.22538 0.94470 0.93191 0.82880 1.21885 1.02432 0.91767 1.03559 1.22426 1.02036 1.02079 0.96498 1.86744 1.68865 1.24182 1.45848 1.22738 0.76853 0.81081 0.86316 1.90546 1.34977 1.70369 1.43338 1.22080 1.06165 0.95482 0.86514 1.22858 0.74910 0.81175 0.88898 1.90621 1.40232 1.68757 1.41844 1.86599 1.72640 1.25429 1.39861 1.23341 0.99251 0.94634 0.80669 1.18230 0.93407 0.86939 0.94951 1.21559 0.96944 1.01238 0.97370 1.21596 0.96974 1.01965 0.96519 1.21169 1.36903 1.00103 0.99234 0.93433 1.25456 0.94673 0.97049 0.99664 1.69955 1.40221 1.11354 1.31880 0.85720 0.78442 0.77487 0.80841 1.20143 1.20747 1.20014 1.23047 0.89869 0.96150 1.04707 1.22889 0.94069 0.98834 1.00783 1.23019 0.99569 0.86401 1.04431 0.93410 0.88531 0.91415 0.91319 0.87821 0.92979 0.91175 0.88867 0.91371 0.93691 0.92782 0.94757 0.92125 0.96077 0.96952 0.91853 0.94654 0.92852 0.85620 0.89493 0.90376 0.86498 0.90318 0.85823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 8.37 71.98 0.60 -3.85 16 2 C 0.10 2.62 1.13 -10.79 -0.01 2.60 16 3 C -0.14 -3.25 8.85 71.98 0.64 -2.61 16 4 C -0.17 -3.46 8.37 71.98 0.60 -2.86 16 5 O -0.34 -10.48 8.95 -46.99 -0.42 -10.90 16 6 C 0.49 14.21 6.33 71.23 0.45 14.66 16 7 O -0.50 -14.62 11.40 21.96 0.25 -14.37 16 8 C -0.10 -2.75 1.27 -53.15 -0.07 -2.82 16 9 C 0.48 17.23 6.73 71.24 0.48 17.71 16 10 O -0.52 -20.87 15.58 21.97 0.34 -20.52 16 11 O -0.33 -13.29 7.85 -46.83 -0.37 -13.66 16 12 C 0.09 4.23 4.26 71.98 0.31 4.54 16 13 C 0.07 3.19 0.58 -52.93 -0.03 3.16 16 14 C -0.11 -5.39 8.06 71.98 0.58 -4.81 16 15 C -0.11 -5.45 8.14 71.98 0.59 -4.86 16 16 C -0.54 -28.77 8.01 25.60 0.20 -28.56 16 17 H 0.05 2.57 7.75 -2.91 -0.02 2.54 16 18 C 0.03 1.70 5.13 84.66 0.43 2.14 16 19 N -0.90 -48.40 9.46 21.45 0.20 -48.20 16 20 Si 0.95 42.48 29.54 68.60 2.03 44.51 16 21 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 23 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 24 C -0.10 -2.02 7.21 31.12 0.22 -1.80 16 25 C -0.13 -2.30 7.76 31.14 0.24 -2.06 16 26 C -0.10 -2.14 6.79 31.13 0.21 -1.93 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 1.84 5.89 -2.39 -0.01 1.82 16 30 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.05 1.46 7.74 -2.38 -0.02 1.44 16 33 H 0.07 1.57 5.89 -2.39 -0.01 1.56 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.04 2.08 8.13 -2.39 -0.02 2.06 16 37 H 0.05 2.43 8.13 -2.39 -0.02 2.41 16 38 H 0.03 1.48 7.50 -2.39 -0.02 1.46 16 39 H 0.06 3.11 6.25 -2.39 -0.01 3.10 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.06 3.31 6.10 -2.39 -0.01 3.29 16 43 H 0.03 1.57 7.28 -2.39 -0.02 1.55 16 44 H 0.26 13.53 8.31 -92.70 -0.77 12.76 16 45 H 0.13 1.91 8.09 -2.39 -0.02 1.89 16 46 H 0.09 1.85 8.10 -2.39 -0.02 1.83 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.08 1.96 7.41 -2.39 -0.02 1.95 16 50 H 0.12 2.34 7.43 -2.39 -0.02 2.32 16 Total: -1.00 -62.02 392.52 8.39 -53.63 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.91 Total: 20.88 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.45 Total: -11.36 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.20 Total: -48.20 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.20 Total: -59.45 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -62.02 8.39 -53.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850950623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.931 kcal (2) G-P(sol) polarization free energy of solvation -62.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds