Wall clock time and date at job start Tue Mar 31 2020 15:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47304 * 65.00334 * 3 2 1 14 14 C 1.34229 * 116.99647 * 270.00311 * 13 3 2 15 15 O 1.20823 * 120.00153 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99800 * 179.97438 * 14 13 3 17 17 C 1.50703 * 115.54875 * 325.57854 * 16 14 13 18 18 O 1.20820 * 120.00334 * 214.41323 * 17 16 14 19 19 O 1.34231 * 119.99928 * 34.41975 * 17 16 14 20 20 C 1.45199 * 117.00143 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.46830 * 59.99943 * 20 19 17 22 22 C 1.52995 * 109.47407 * 179.97438 * 20 19 17 23 23 C 1.52998 * 109.47424 * 300.00106 * 20 19 17 24 24 C 1.52999 * 117.49699 * 111.24745 * 16 14 13 25 25 C 1.52990 * 117.49994 * 179.91098 * 16 14 13 26 26 C 1.53000 * 117.49984 * 359.97438 * 25 16 14 27 27 C 1.53000 * 117.50294 * 145.01956 * 25 16 14 28 28 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 30 30 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 32 32 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46642 * 59.99909 * 21 20 19 35 35 H 1.08993 * 109.47027 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.46818 * 299.99977 * 21 20 19 37 37 H 1.09001 * 109.47105 * 60.00043 * 22 20 19 38 38 H 1.09001 * 109.47239 * 180.02562 * 22 20 19 39 39 H 1.09004 * 109.47372 * 300.00283 * 22 20 19 40 40 H 1.09011 * 109.46889 * 59.99594 * 23 20 19 41 41 H 1.08993 * 109.47471 * 179.97438 * 23 20 19 42 42 H 1.08996 * 109.47209 * 300.00040 * 23 20 19 43 43 H 1.09002 * 117.49509 * 214.97760 * 24 16 14 44 44 H 1.08992 * 117.50399 * 359.97438 * 24 16 14 45 45 H 1.08996 * 109.47071 * 60.00031 * 26 25 16 46 46 H 1.09003 * 109.47371 * 180.02562 * 26 25 16 47 47 H 1.09004 * 109.47188 * 299.99890 * 26 25 16 48 48 H 1.09005 * 109.46769 * 60.00059 * 27 25 16 49 49 H 1.08994 * 109.47373 * 179.97438 * 27 25 16 50 50 H 1.08997 * 109.46972 * 300.00451 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 8 1.6560 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7377 0.2654 16 6 0.0070 3.4216 2.5088 17 6 0.4040 2.7624 3.8045 18 8 -0.3399 2.8029 4.7557 19 8 1.5841 2.1303 3.9020 20 6 1.9008 1.5186 5.1802 21 6 0.8420 0.4671 5.5186 22 6 3.2748 0.8504 5.0995 23 6 1.9188 2.5930 6.2693 24 6 -0.0585 4.9500 2.4848 25 6 -1.3494 4.1276 2.4620 26 6 -2.1291 4.0733 1.1467 27 6 -2.1989 4.1108 3.7344 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8295 -0.0694 -2.9455 34 1 0.8292 -0.2983 4.7427 35 1 1.0794 0.0083 6.4783 36 1 -0.1370 0.9428 5.5760 37 1 4.0293 1.5992 4.8582 38 1 3.5122 0.3909 6.0589 39 1 3.2615 0.0848 4.3237 40 1 0.9397 3.0687 6.3267 41 1 2.1561 2.1338 7.2289 42 1 2.6730 3.3421 6.0282 43 1 0.1850 5.4787 3.4064 44 1 0.2355 5.4520 1.5631 45 1 -2.3360 3.0345 0.8896 46 1 -3.0687 4.6144 1.2586 47 1 -1.5378 4.5327 0.3545 48 1 -1.6508 4.5936 4.5435 49 1 -3.1306 4.6477 3.5563 50 1 -2.4202 3.0798 4.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850978990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:06 Heat of formation + Delta-G solvation = -153.910979 kcal Electronic energy + Delta-G solvation = -31074.569683 eV Core-core repulsion = 27068.178211 eV Total energy + Delta-G solvation = -4006.391472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20357 -39.77582 -38.17792 -36.39775 -35.37232 -33.95245 -33.44467 -31.35723 -29.86179 -27.39300 -27.37917 -27.33113 -27.22257 -25.52612 -23.34857 -22.45212 -21.00586 -19.81734 -19.51631 -18.74867 -17.67030 -16.55974 -16.46769 -15.96828 -15.84028 -15.16943 -14.92095 -14.53299 -14.33531 -14.18733 -13.71125 -13.63290 -13.44640 -13.19067 -12.88108 -12.78210 -12.38333 -12.24770 -12.15355 -11.97950 -11.84893 -11.76052 -11.72044 -11.47614 -11.40837 -11.33729 -11.22452 -11.10706 -11.03353 -10.93451 -10.63959 -10.36972 -10.28038 -10.24824 -10.19628 -9.75844 -9.56175 -9.39610 -9.25028 -8.78117 -8.43218 -6.16666 -4.22831 2.09965 2.62813 2.95797 3.26537 3.29815 3.31423 3.46746 3.67575 4.32627 4.43734 4.54815 4.74727 4.79780 4.86583 5.00107 5.08787 5.13706 5.17310 5.52971 5.55600 5.57053 5.71607 5.73656 5.77728 5.82406 5.86797 5.89658 5.96376 5.97567 6.02884 6.11341 6.15048 6.23518 6.28313 6.30948 6.33606 6.34296 6.45800 6.57755 6.72818 6.88993 6.96771 7.17932 7.26414 7.63570 7.75281 7.93937 8.00085 8.18290 8.64631 8.91780 9.41877 10.90122 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.005229 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.046360 B = 5353.966514 C = 6766.136742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.222 3.778 4 H 0.046 0.954 5 C -0.517 4.517 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.331 6.331 14 C 0.492 3.508 15 O -0.503 6.503 16 C -0.155 4.155 17 C 0.512 3.488 18 O -0.503 6.503 19 O -0.313 6.313 20 C 0.115 3.885 21 C -0.182 4.182 22 C -0.140 4.140 23 C -0.181 4.181 24 C -0.120 4.120 25 C -0.056 4.056 26 C -0.107 4.107 27 C -0.106 4.106 28 H 0.029 0.971 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.108 0.892 32 H 0.041 0.959 33 H 0.266 0.734 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.621 5.204 13.690 16.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.170 3.830 4 H 0.064 0.936 5 C -0.555 4.555 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.527 5.527 9 Si 0.736 3.264 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.246 6.246 14 C 0.334 3.666 15 O -0.394 6.394 16 C -0.157 4.157 17 C 0.356 3.644 18 O -0.393 6.393 19 O -0.229 6.229 20 C 0.079 3.921 21 C -0.239 4.239 22 C -0.197 4.197 23 C -0.238 4.238 24 C -0.157 4.157 25 C -0.056 4.056 26 C -0.164 4.164 27 C -0.163 4.163 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.130 0.870 44 H 0.135 0.865 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.077 0.923 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.929 5.044 13.491 15.983 hybrid contribution 1.133 -0.319 -0.139 1.186 sum -5.796 4.725 13.352 15.303 Atomic orbital electron populations 1.21850 0.98493 0.98940 1.00602 1.22007 0.92505 0.99458 1.03288 1.20688 0.95029 0.88703 0.78570 0.93641 1.20992 0.89638 1.38617 1.06208 0.91335 1.24863 0.99059 0.94843 0.95119 1.69880 1.35374 1.37872 1.09583 0.86374 0.84115 0.78456 0.77427 1.19968 1.21094 1.20030 1.86581 1.32820 1.61582 1.43636 1.21473 0.81363 0.77003 0.86744 1.90623 1.55366 1.58485 1.34877 1.20930 1.06596 0.97582 0.90620 1.21791 0.79576 0.75462 0.87569 1.90542 1.52298 1.57674 1.38790 1.86799 1.35573 1.63417 1.37072 1.22192 0.96268 0.92664 0.80939 1.22479 1.00429 0.98845 1.02143 1.21821 0.93845 1.01395 1.02677 1.22483 1.04097 0.99099 0.98106 1.23435 1.00134 0.87003 1.05153 1.21884 0.87194 0.97092 0.99459 1.21468 0.98377 1.03472 0.93107 1.21452 0.98037 1.03098 0.93664 0.95156 0.92782 0.94914 0.87353 0.94047 0.92404 0.91762 0.91357 0.90045 0.91296 0.90846 0.90825 0.90016 0.91321 0.92018 0.87016 0.86545 0.90804 0.92533 0.91056 0.91507 0.92324 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.80 16 2 C -0.13 -3.34 5.48 -26.73 -0.15 -3.48 16 3 C 0.22 5.84 2.25 -27.88 -0.06 5.77 16 4 H 0.05 1.32 7.16 -51.93 -0.37 0.94 16 5 C -0.52 -14.28 8.90 -34.44 -0.31 -14.58 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.85 11.28 55.43 0.63 -24.23 16 9 Si 0.91 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 13 O -0.33 -7.86 8.35 -45.55 -0.38 -8.24 16 14 C 0.49 10.27 5.92 36.01 0.21 10.49 16 15 O -0.50 -11.00 10.26 -18.75 -0.19 -11.19 16 16 C -0.15 -2.60 2.58 -156.82 -0.40 -3.00 16 17 C 0.51 8.55 6.78 36.01 0.24 8.80 16 18 O -0.50 -7.87 8.61 -18.75 -0.16 -8.03 16 19 O -0.31 -5.50 8.43 -45.56 -0.38 -5.89 16 20 C 0.12 1.62 1.13 -90.62 -0.10 1.52 16 21 C -0.18 -2.39 8.37 37.16 0.31 -2.08 16 22 C -0.14 -1.80 8.85 37.15 0.33 -1.48 16 23 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 24 C -0.12 -1.59 9.23 -26.69 -0.25 -1.84 16 25 C -0.06 -0.77 2.70 -154.47 -0.42 -1.19 16 26 C -0.11 -1.48 8.09 37.16 0.30 -1.18 16 27 C -0.11 -1.26 8.09 37.16 0.30 -0.96 16 28 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 29 H 0.05 1.23 7.80 -51.93 -0.40 0.82 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.11 2.91 5.94 -51.93 -0.31 2.60 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.15 5.89 -51.93 -0.31 0.85 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.06 5.89 -51.92 -0.31 0.75 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.11 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.12 1.49 8.05 -51.93 -0.42 1.07 16 45 H 0.07 1.15 7.26 -51.93 -0.38 0.78 16 46 H 0.06 0.62 7.93 -51.93 -0.41 0.21 16 47 H 0.07 1.06 7.02 -51.93 -0.36 0.69 16 48 H 0.07 0.79 7.02 -51.93 -0.36 0.42 16 49 H 0.06 0.58 7.92 -51.93 -0.41 0.16 16 50 H 0.07 0.94 7.26 -51.93 -0.38 0.56 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -29.45 387.06 -7.64 -37.08 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -8.50 Total: 5.03 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 0.55 Total: -6.25 kcal Atomic # 7 Polarization: -24.85 SS G_CDS: 0.63 Total: -24.23 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.12 Total: -33.36 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.45 -7.64 -37.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.827 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds