Wall clock time and date at job start Tue Mar 31 2020 15:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 O 1.45202 * 109.47304 * 65.00334 * 3 2 1 14 14 C 1.34229 * 116.99647 * 270.00311 * 13 3 2 15 15 O 1.20823 * 120.00153 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99800 * 179.97438 * 14 13 3 17 17 C 1.50703 * 115.54875 * 325.57854 * 16 14 13 18 18 O 1.20820 * 120.00334 * 214.41323 * 17 16 14 19 19 O 1.34231 * 119.99928 * 34.41975 * 17 16 14 20 20 C 1.45199 * 117.00143 * 179.97438 * 19 17 16 21 21 C 1.53007 * 109.46830 * 59.99943 * 20 19 17 22 22 C 1.52995 * 109.47407 * 179.97438 * 20 19 17 23 23 C 1.52998 * 109.47424 * 300.00106 * 20 19 17 24 24 C 1.52999 * 117.49699 * 111.24745 * 16 14 13 25 25 C 1.52990 * 117.49994 * 179.91098 * 16 14 13 26 26 C 1.53000 * 117.49984 * 359.97438 * 25 16 14 27 27 C 1.53000 * 117.50294 * 145.01956 * 25 16 14 28 28 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 29 29 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 30 30 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 32 32 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09001 * 109.46642 * 59.99909 * 21 20 19 35 35 H 1.08993 * 109.47027 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.46818 * 299.99977 * 21 20 19 37 37 H 1.09001 * 109.47105 * 60.00043 * 22 20 19 38 38 H 1.09001 * 109.47239 * 180.02562 * 22 20 19 39 39 H 1.09004 * 109.47372 * 300.00283 * 22 20 19 40 40 H 1.09011 * 109.46889 * 59.99594 * 23 20 19 41 41 H 1.08993 * 109.47471 * 179.97438 * 23 20 19 42 42 H 1.08996 * 109.47209 * 300.00040 * 23 20 19 43 43 H 1.09002 * 117.49509 * 214.97760 * 24 16 14 44 44 H 1.08992 * 117.50399 * 359.97438 * 24 16 14 45 45 H 1.08996 * 109.47071 * 60.00031 * 26 25 16 46 46 H 1.09003 * 109.47371 * 180.02562 * 26 25 16 47 47 H 1.09004 * 109.47188 * 299.99890 * 26 25 16 48 48 H 1.09005 * 109.46769 * 60.00059 * 27 25 16 49 49 H 1.08994 * 109.47373 * 179.97438 * 27 25 16 50 50 H 1.08997 * 109.46972 * 300.00451 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 8 1.6560 2.0917 1.2407 14 6 0.4728 2.7254 1.2560 15 8 -0.2188 2.7377 0.2654 16 6 0.0070 3.4216 2.5088 17 6 0.4040 2.7624 3.8045 18 8 -0.3399 2.8029 4.7557 19 8 1.5841 2.1303 3.9020 20 6 1.9008 1.5186 5.1802 21 6 0.8420 0.4671 5.5186 22 6 3.2748 0.8504 5.0995 23 6 1.9188 2.5930 6.2693 24 6 -0.0585 4.9500 2.4848 25 6 -1.3494 4.1276 2.4620 26 6 -2.1291 4.0733 1.1467 27 6 -2.1989 4.1108 3.7344 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8295 -0.0694 -2.9455 34 1 0.8292 -0.2983 4.7427 35 1 1.0794 0.0083 6.4783 36 1 -0.1370 0.9428 5.5760 37 1 4.0293 1.5992 4.8582 38 1 3.5122 0.3909 6.0589 39 1 3.2615 0.0848 4.3237 40 1 0.9397 3.0687 6.3267 41 1 2.1561 2.1338 7.2289 42 1 2.6730 3.3421 6.0282 43 1 0.1850 5.4787 3.4064 44 1 0.2355 5.4520 1.5631 45 1 -2.3360 3.0345 0.8896 46 1 -3.0687 4.6144 1.2586 47 1 -1.5378 4.5327 0.3545 48 1 -1.6508 4.5936 4.5435 49 1 -3.1306 4.6477 3.5563 50 1 -2.4202 3.0798 4.0099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850978990.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:05 Heat of formation + Delta-G solvation = -167.132237 kcal Electronic energy + Delta-G solvation = -31075.142999 eV Core-core repulsion = 27068.178211 eV Total energy + Delta-G solvation = -4006.964788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49621 -41.27335 -39.56129 -37.77541 -36.96316 -35.52312 -35.00672 -33.36220 -31.04522 -29.32636 -28.43341 -28.34516 -28.24574 -26.85399 -25.23375 -23.98394 -22.43812 -21.54695 -20.73168 -20.11708 -19.17703 -18.51228 -17.89040 -17.45214 -17.25857 -16.71468 -16.57874 -16.04261 -15.53841 -15.31095 -15.15419 -14.82354 -14.68592 -14.50523 -14.45047 -14.23013 -13.96362 -13.38984 -13.34591 -13.27225 -13.15447 -13.12410 -13.00961 -12.92840 -12.82250 -12.82018 -12.75194 -12.55373 -12.46230 -12.28393 -12.16037 -12.11605 -11.77008 -11.63224 -11.44007 -11.36850 -11.33067 -10.84416 -10.78417 -10.68445 -10.49965 -8.25608 -6.41170 0.82815 1.25282 1.41340 1.44567 1.52354 1.62822 1.90327 2.40546 2.42496 3.03914 3.24221 3.40046 3.58376 3.74560 3.80547 3.83897 3.98265 4.03331 4.28151 4.34842 4.36458 4.52208 4.55913 4.58566 4.63108 4.71925 4.77887 4.80646 4.82124 4.83734 4.87684 4.91931 4.99351 5.01359 5.04656 5.05892 5.11894 5.20122 5.27395 5.28699 5.30922 5.35129 5.46021 5.54121 5.59929 5.67265 5.97470 6.14426 6.61982 6.76468 7.00411 7.29804 8.80977 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011329 B = 0.005229 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.046360 B = 5353.966514 C = 6766.136742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.127 4.127 3 C 0.229 3.771 4 H 0.009 0.991 5 C -0.543 4.543 6 H 0.062 0.938 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.976 3.024 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.269 1.269 13 O -0.342 6.342 14 C 0.485 3.515 15 O -0.520 6.520 16 C -0.184 4.184 17 C 0.511 3.489 18 O -0.495 6.495 19 O -0.342 6.342 20 C 0.101 3.899 21 C -0.176 4.176 22 C -0.138 4.138 23 C -0.172 4.172 24 C -0.101 4.101 25 C -0.044 4.044 26 C -0.105 4.105 27 C -0.099 4.099 28 H 0.029 0.971 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.270 0.730 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.107 0.893 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.140 0.860 44 H 0.118 0.882 45 H 0.049 0.951 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.071 0.929 49 H 0.086 0.914 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 6.004 15.749 18.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.165 4.165 3 C 0.176 3.824 4 H 0.026 0.974 5 C -0.581 4.581 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.799 3.201 10 H -0.190 1.190 11 H -0.202 1.202 12 H -0.194 1.194 13 O -0.258 6.258 14 C 0.329 3.671 15 O -0.410 6.410 16 C -0.187 4.187 17 C 0.355 3.645 18 O -0.385 6.385 19 O -0.259 6.259 20 C 0.066 3.934 21 C -0.233 4.233 22 C -0.195 4.195 23 C -0.229 4.229 24 C -0.138 4.138 25 C -0.044 4.044 26 C -0.162 4.162 27 C -0.156 4.156 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.158 0.842 44 H 0.137 0.863 45 H 0.068 0.932 46 H 0.109 0.891 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.105 0.895 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.945 5.850 15.566 18.022 hybrid contribution 1.068 -0.551 -0.784 1.435 sum -5.877 5.299 14.782 16.767 Atomic orbital electron populations 1.21681 0.96453 1.00381 0.99863 1.21839 0.94249 0.98407 1.01994 1.20347 0.94503 0.89038 0.78555 0.97373 1.21235 0.90475 1.39618 1.06759 0.91955 1.25728 1.03897 0.93938 0.94391 1.70000 1.37341 1.37947 1.09931 0.85343 0.78135 0.78766 0.77848 1.19027 1.20201 1.19409 1.86577 1.34725 1.62321 1.42132 1.22261 0.80174 0.76441 0.88218 1.90609 1.55381 1.58960 1.36091 1.21077 1.09510 0.99470 0.88601 1.21697 0.79590 0.75624 0.87582 1.90533 1.51976 1.57495 1.38483 1.86780 1.36030 1.63795 1.39253 1.22574 0.96836 0.93547 0.80430 1.22434 0.99650 0.98158 1.03071 1.21855 0.93243 1.00619 1.03760 1.22412 1.03565 0.98470 0.98437 1.23672 0.98872 0.84619 1.06639 1.22109 0.86687 0.95330 1.00287 1.21432 0.99762 1.02265 0.92731 1.21442 0.98905 1.02696 0.92538 0.95235 0.94048 0.92287 0.89413 0.94280 0.92092 0.93491 0.88408 0.91168 0.91885 0.87441 0.93109 0.90945 0.88650 0.92020 0.84229 0.86329 0.93160 0.89100 0.92646 0.91011 0.89511 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.72 8.57 71.98 0.62 -5.11 16 2 C -0.13 -6.54 5.48 30.59 0.17 -6.37 16 3 C 0.23 12.58 2.25 29.85 0.07 12.65 16 4 H 0.01 0.52 7.16 -2.38 -0.02 0.50 16 5 C -0.54 -31.07 8.90 25.60 0.23 -30.84 16 6 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 7 C 0.02 1.11 5.29 84.66 0.45 1.56 16 8 N -0.91 -52.34 11.28 21.45 0.24 -52.10 16 9 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 13 O -0.34 -16.98 8.35 -45.39 -0.38 -17.36 16 14 C 0.49 20.98 5.92 71.24 0.42 21.41 16 15 O -0.52 -23.72 10.26 21.97 0.23 -23.50 16 16 C -0.18 -6.16 2.58 -53.68 -0.14 -6.30 16 17 C 0.51 16.93 6.78 71.24 0.48 17.41 16 18 O -0.50 -14.95 8.61 21.98 0.19 -14.76 16 19 O -0.34 -12.15 8.43 -45.41 -0.38 -12.54 16 20 C 0.10 2.76 1.13 -10.79 -0.01 2.75 16 21 C -0.18 -4.46 8.37 71.98 0.60 -3.85 16 22 C -0.14 -3.44 8.85 71.98 0.64 -2.80 16 23 C -0.17 -3.76 8.37 71.98 0.60 -3.15 16 24 C -0.10 -2.53 9.23 30.62 0.28 -2.25 16 25 C -0.04 -1.14 2.70 -52.16 -0.14 -1.28 16 26 C -0.11 -2.81 8.09 71.98 0.58 -2.22 16 27 C -0.10 -2.11 8.09 71.98 0.58 -1.53 16 28 H 0.03 1.30 6.06 -2.38 -0.01 1.29 16 29 H 0.04 1.94 7.80 -2.39 -0.02 1.93 16 30 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.09 4.90 5.94 -2.38 -0.01 4.88 16 32 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.27 14.51 8.31 -92.70 -0.77 13.73 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.93 5.89 -2.39 -0.01 1.92 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.07 1.73 5.89 -2.38 -0.01 1.72 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.14 2.70 8.05 -2.39 -0.02 2.68 16 44 H 0.12 2.91 8.05 -2.39 -0.02 2.89 16 45 H 0.05 1.58 7.26 -2.39 -0.02 1.57 16 46 H 0.09 1.78 7.93 -2.39 -0.02 1.76 16 47 H 0.05 1.64 7.02 -2.38 -0.02 1.62 16 48 H 0.07 1.48 7.02 -2.38 -0.02 1.46 16 49 H 0.09 1.38 7.92 -2.39 -0.02 1.36 16 50 H 0.06 1.40 7.26 -2.39 -0.02 1.39 16 Total: -1.00 -66.53 387.06 8.27 -58.26 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: 0.92 Total: 26.83 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 5.43 Total: -9.94 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: 0.24 Total: -52.10 kcal Atomic # 8 Polarization: -67.81 SS G_CDS: -0.35 Total: -68.15 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -66.53 8.27 -58.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978990.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.873 kcal (2) G-P(sol) polarization free energy of solvation -66.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds