Wall clock time and date at job start Tue Mar 31 2020 15:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 H 1.09000 * 109.46833 * 55.00005 * 3 2 1 5 5 C 1.50705 * 109.47057 * 174.99890 * 3 2 1 6 6 H 1.08003 * 120.00009 * 119.99853 * 5 3 2 7 7 C 1.37879 * 119.99849 * 300.00305 * 5 3 2 8 8 N 1.31515 * 119.99601 * 179.97438 * 7 5 3 9 9 Si 1.86791 * 119.99999 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46987 * 90.00494 * 9 7 5 11 11 H 1.48499 * 109.47096 * 210.00294 * 9 7 5 12 12 H 1.48503 * 109.47481 * 330.00426 * 9 7 5 13 13 O 1.45203 * 109.47000 * 294.99832 * 3 2 1 14 14 C 1.34226 * 116.99789 * 90.00129 * 13 3 2 15 15 O 1.20822 * 120.00259 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99826 * 179.97438 * 14 13 3 17 17 C 1.50697 * 115.56331 * 34.31172 * 16 14 13 18 18 O 1.20824 * 120.00268 * 145.68893 * 17 16 14 19 19 O 1.34226 * 119.99924 * 325.69149 * 17 16 14 20 20 C 1.45200 * 117.00157 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.47436 * 59.99445 * 20 19 17 22 22 C 1.53001 * 109.47526 * 179.97438 * 20 19 17 23 23 C 1.53005 * 109.47042 * 299.99622 * 20 19 17 24 24 C 1.53000 * 117.50175 * 248.62257 * 16 14 13 25 25 C 1.52997 * 60.00347 * 252.51187 * 24 16 14 26 26 C 1.52997 * 117.49797 * 252.51337 * 25 24 16 27 27 C 1.52998 * 117.51857 * 107.47572 * 25 24 16 28 28 H 1.09001 * 109.47803 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47266 * 300.00148 * 1 2 3 30 30 H 1.09001 * 109.47065 * 59.99875 * 1 2 3 31 31 H 1.09005 * 109.46803 * 239.99699 * 2 1 3 32 32 H 1.09001 * 109.47065 * 120.00125 * 2 1 3 33 33 H 0.96996 * 120.00051 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47048 * 60.00334 * 21 20 19 35 35 H 1.09001 * 109.47556 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.47158 * 300.00414 * 21 20 19 37 37 H 1.09005 * 109.46489 * 59.99667 * 22 20 19 38 38 H 1.08995 * 109.47466 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.47060 * 300.00270 * 22 20 19 40 40 H 1.09003 * 109.46951 * 59.99954 * 23 20 19 41 41 H 1.08993 * 109.47161 * 180.02562 * 23 20 19 42 42 H 1.08999 * 109.46835 * 300.00580 * 23 20 19 43 43 H 1.09002 * 117.49696 * 0.02562 * 24 16 14 44 44 H 1.09002 * 117.50343 * 145.02291 * 24 16 14 45 45 H 1.08998 * 109.47374 * 128.61792 * 26 25 24 46 46 H 1.08999 * 109.47059 * 248.61868 * 26 25 24 47 47 H 1.08995 * 109.47306 * 8.61474 * 26 25 24 48 48 H 1.08996 * 109.47413 * 351.37793 * 27 25 24 49 49 H 1.09004 * 109.46810 * 111.37649 * 27 25 24 50 50 H 1.08996 * 109.47194 * 231.36944 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8782 1.2280 8 7 5.4540 0.8793 1.3358 9 14 3.0963 0.1099 2.5706 10 1 2.8744 -1.3262 2.2645 11 1 3.7940 0.2358 3.8754 12 1 1.7880 0.8092 2.6394 13 8 1.6559 2.0916 -1.2408 14 6 0.4728 2.7254 -1.2560 15 8 -0.2188 2.7378 -0.2654 16 6 0.0075 3.4225 -2.5084 17 6 0.4069 2.7659 -3.8047 18 8 -0.3352 2.8083 -4.7572 19 8 1.5871 2.1338 -3.9011 20 6 1.9062 1.5247 -5.1800 21 6 1.9264 2.6013 -6.2668 22 6 3.2806 0.8573 -5.0983 23 6 0.8481 0.4740 -5.5226 24 6 -0.0609 4.9507 -2.4824 25 6 -1.3500 4.1268 -2.4622 26 6 -2.1980 4.1105 -3.7355 27 6 -2.1314 4.0690 -1.1481 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8770 0.4815 2.1127 34 1 2.6803 3.3498 -6.0228 35 1 2.1655 2.1440 -7.2269 36 1 0.9475 3.0772 -6.3251 37 1 3.2665 0.0903 -4.3239 38 1 3.5199 0.3997 -6.0582 39 1 4.0342 1.6061 -4.8544 40 1 -0.1309 0.9499 -5.5809 41 1 1.0878 0.0165 -6.4823 42 1 0.8336 -0.2929 -4.7482 43 1 0.2309 5.4520 -1.5596 44 1 0.1829 5.4813 -3.4029 45 1 -2.4177 3.0795 -4.0125 46 1 -3.1308 4.6456 -3.5577 47 1 -1.6497 4.5948 -4.5435 48 1 -1.5418 4.5276 -0.3543 49 1 -3.0717 4.6088 -1.2604 50 1 -2.3375 3.0294 -0.8934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850978993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:16 Heat of formation + Delta-G solvation = -144.309773 kcal Electronic energy + Delta-G solvation = -31160.230206 eV Core-core repulsion = 27154.255074 eV Total energy + Delta-G solvation = -4005.975132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.29297 -39.93346 -38.33680 -36.50150 -35.57643 -33.99643 -33.54151 -31.92028 -29.96296 -27.86420 -27.45553 -27.37800 -27.23558 -25.65727 -23.18086 -22.51282 -21.25846 -20.09274 -19.62561 -18.88584 -17.87675 -16.64947 -16.55850 -16.23869 -15.98292 -15.43307 -15.07110 -14.65680 -14.38175 -14.22751 -13.74987 -13.64847 -13.49773 -13.40958 -13.21435 -12.82548 -12.53065 -12.35121 -12.17465 -12.11157 -11.96689 -11.91716 -11.82620 -11.74055 -11.72156 -11.48486 -11.39342 -11.30906 -11.17060 -11.08448 -10.76053 -10.45196 -10.37009 -10.23062 -10.02170 -9.72825 -9.65500 -9.56083 -9.36848 -9.06207 -8.64939 -6.22221 -4.23746 2.02249 2.53304 2.82998 3.17634 3.25686 3.30203 3.32626 3.57024 4.26181 4.34445 4.48629 4.66052 4.77643 4.85133 4.98070 5.01119 5.03147 5.07543 5.47505 5.52145 5.53627 5.56346 5.67006 5.76679 5.78555 5.79963 5.81788 5.88513 5.90082 5.90342 5.92825 5.96143 5.98971 6.03537 6.14413 6.26002 6.28290 6.33962 6.40914 6.49822 6.55442 6.65981 6.69193 6.72028 7.05548 7.35692 7.52100 7.93813 8.22427 8.59285 8.87305 9.35147 10.89808 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.005431 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.858923 B = 5153.883977 C = 6563.514707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.197 3.803 4 H 0.045 0.955 5 C -0.520 4.520 6 H 0.088 0.912 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.875 3.125 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.261 1.261 13 O -0.316 6.316 14 C 0.493 3.507 15 O -0.504 6.504 16 C -0.155 4.155 17 C 0.511 3.489 18 O -0.502 6.502 19 O -0.313 6.313 20 C 0.116 3.884 21 C -0.181 4.181 22 C -0.141 4.141 23 C -0.182 4.182 24 C -0.118 4.118 25 C -0.055 4.055 26 C -0.106 4.106 27 C -0.108 4.108 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.269 0.731 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.117 0.883 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 4.290 -12.520 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.143 3.857 4 H 0.063 0.937 5 C -0.558 4.558 6 H 0.106 0.894 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.704 3.296 10 H -0.200 1.200 11 H -0.217 1.217 12 H -0.185 1.185 13 O -0.230 6.230 14 C 0.335 3.665 15 O -0.395 6.395 16 C -0.158 4.158 17 C 0.355 3.645 18 O -0.392 6.392 19 O -0.229 6.229 20 C 0.080 3.920 21 C -0.238 4.238 22 C -0.198 4.198 23 C -0.239 4.239 24 C -0.155 4.155 25 C -0.056 4.056 26 C -0.163 4.163 27 C -0.165 4.165 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.910 4.182 -12.398 17.693 hybrid contribution -0.170 -0.779 0.777 1.113 sum -12.079 3.403 -11.621 17.104 Atomic orbital electron populations 1.21888 0.97080 0.99967 1.01648 1.22354 0.94257 0.99710 1.02139 1.21004 0.96420 0.88021 0.80232 0.93692 1.20777 0.87646 1.39617 1.07715 0.89370 1.24715 0.94897 0.95337 0.97319 1.69833 1.08440 1.44468 1.29773 0.87036 0.81054 0.80151 0.81397 1.20012 1.21735 1.18536 1.86614 1.32970 1.61526 1.41916 1.21584 0.81073 0.76850 0.86966 1.90621 1.55379 1.58563 1.34905 1.20897 1.06727 0.97785 0.90376 1.21755 0.79659 0.75538 0.87562 1.90549 1.52423 1.57535 1.38648 1.86799 1.35445 1.63447 1.37187 1.22211 0.96305 0.92680 0.80810 1.22485 1.04087 0.99104 0.98140 1.21827 0.93781 1.01482 1.02685 1.22480 1.00402 0.98819 1.02181 1.23446 0.99919 0.86804 1.05351 1.21893 0.87150 0.97008 0.99519 1.21458 0.98066 1.03142 0.93624 1.21475 0.98462 1.03411 0.93138 0.94007 0.92498 0.93772 0.91270 0.91848 0.92127 0.91931 0.91272 0.90057 0.90826 0.90809 0.91135 0.90071 0.91291 0.91826 0.86451 0.86835 0.91081 0.92267 0.91410 0.91042 0.92411 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.57 37.16 0.32 -2.62 16 2 C -0.15 -3.33 5.15 -26.73 -0.14 -3.46 16 3 C 0.20 4.88 1.84 -27.88 -0.05 4.82 16 4 H 0.05 1.17 6.21 -51.93 -0.32 0.85 16 5 C -0.52 -14.68 9.48 -34.44 -0.33 -15.01 16 6 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 7 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 8 N -0.89 -26.44 13.96 55.43 0.77 -25.66 16 9 Si 0.87 21.45 24.41 -169.99 -4.15 17.30 16 10 H -0.27 -6.46 6.83 56.52 0.39 -6.08 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 O -0.32 -7.19 8.35 -45.55 -0.38 -7.57 16 14 C 0.49 9.73 5.92 36.00 0.21 9.95 16 15 O -0.50 -10.28 10.26 -18.75 -0.19 -10.47 16 16 C -0.16 -2.48 2.59 -156.81 -0.41 -2.89 16 17 C 0.51 8.22 6.78 36.00 0.24 8.47 16 18 O -0.50 -7.57 8.61 -18.75 -0.16 -7.73 16 19 O -0.31 -5.38 8.43 -45.55 -0.38 -5.77 16 20 C 0.12 1.61 1.13 -90.62 -0.10 1.50 16 21 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 22 C -0.14 -1.83 8.85 37.16 0.33 -1.50 16 23 C -0.18 -2.31 8.37 37.16 0.31 -2.00 16 24 C -0.12 -1.49 9.23 -26.73 -0.25 -1.74 16 25 C -0.06 -0.72 2.70 -154.51 -0.42 -1.14 16 26 C -0.11 -1.20 8.09 37.16 0.30 -0.90 16 27 C -0.11 -1.38 8.09 37.16 0.30 -1.08 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 1.15 7.80 -51.93 -0.40 0.74 16 30 H 0.04 0.86 6.06 -51.93 -0.31 0.55 16 31 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 1.48 3.22 -51.93 -0.17 1.31 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.03 5.89 -51.93 -0.31 0.73 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.11 5.89 -51.93 -0.31 0.80 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.12 1.42 8.05 -51.93 -0.42 1.01 16 44 H 0.11 1.21 8.05 -51.93 -0.42 0.79 16 45 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 46 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 47 H 0.07 0.76 7.02 -51.93 -0.36 0.40 16 48 H 0.07 0.99 7.02 -51.93 -0.36 0.62 16 49 H 0.06 0.59 7.92 -51.93 -0.41 0.18 16 50 H 0.07 1.05 7.26 -51.93 -0.38 0.68 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -30.58 380.30 -6.59 -37.17 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -8.37 Total: 4.25 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: 0.54 Total: -7.24 kcal Atomic # 7 Polarization: -26.44 SS G_CDS: 0.77 Total: -25.66 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -1.12 Total: -31.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.15 Total: 17.30 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.58 -6.59 -37.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.139 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds