Wall clock time and date at job start Tue Mar 31 2020 15:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 H 1.09000 * 109.46833 * 55.00005 * 3 2 1 5 5 C 1.50705 * 109.47057 * 174.99890 * 3 2 1 6 6 H 1.08003 * 120.00009 * 119.99853 * 5 3 2 7 7 C 1.37879 * 119.99849 * 300.00305 * 5 3 2 8 8 N 1.31515 * 119.99601 * 179.97438 * 7 5 3 9 9 Si 1.86791 * 119.99999 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46987 * 90.00494 * 9 7 5 11 11 H 1.48499 * 109.47096 * 210.00294 * 9 7 5 12 12 H 1.48503 * 109.47481 * 330.00426 * 9 7 5 13 13 O 1.45203 * 109.47000 * 294.99832 * 3 2 1 14 14 C 1.34226 * 116.99789 * 90.00129 * 13 3 2 15 15 O 1.20822 * 120.00259 * 0.02562 * 14 13 3 16 16 C 1.50696 * 119.99826 * 179.97438 * 14 13 3 17 17 C 1.50697 * 115.56331 * 34.31172 * 16 14 13 18 18 O 1.20824 * 120.00268 * 145.68893 * 17 16 14 19 19 O 1.34226 * 119.99924 * 325.69149 * 17 16 14 20 20 C 1.45200 * 117.00157 * 180.02562 * 19 17 16 21 21 C 1.52996 * 109.47436 * 59.99445 * 20 19 17 22 22 C 1.53001 * 109.47526 * 179.97438 * 20 19 17 23 23 C 1.53005 * 109.47042 * 299.99622 * 20 19 17 24 24 C 1.53000 * 117.50175 * 248.62257 * 16 14 13 25 25 C 1.52997 * 60.00347 * 252.51187 * 24 16 14 26 26 C 1.52997 * 117.49797 * 252.51337 * 25 24 16 27 27 C 1.52998 * 117.51857 * 107.47572 * 25 24 16 28 28 H 1.09001 * 109.47803 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47266 * 300.00148 * 1 2 3 30 30 H 1.09001 * 109.47065 * 59.99875 * 1 2 3 31 31 H 1.09005 * 109.46803 * 239.99699 * 2 1 3 32 32 H 1.09001 * 109.47065 * 120.00125 * 2 1 3 33 33 H 0.96996 * 120.00051 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.47048 * 60.00334 * 21 20 19 35 35 H 1.09001 * 109.47556 * 180.02562 * 21 20 19 36 36 H 1.09003 * 109.47158 * 300.00414 * 21 20 19 37 37 H 1.09005 * 109.46489 * 59.99667 * 22 20 19 38 38 H 1.08995 * 109.47466 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.47060 * 300.00270 * 22 20 19 40 40 H 1.09003 * 109.46951 * 59.99954 * 23 20 19 41 41 H 1.08993 * 109.47161 * 180.02562 * 23 20 19 42 42 H 1.08999 * 109.46835 * 300.00580 * 23 20 19 43 43 H 1.09002 * 117.49696 * 0.02562 * 24 16 14 44 44 H 1.09002 * 117.50343 * 145.02291 * 24 16 14 45 45 H 1.08998 * 109.47374 * 128.61792 * 26 25 24 46 46 H 1.08999 * 109.47059 * 248.61868 * 26 25 24 47 47 H 1.08995 * 109.47306 * 8.61474 * 26 25 24 48 48 H 1.08996 * 109.47413 * 351.37793 * 27 25 24 49 49 H 1.09004 * 109.46810 * 111.37649 * 27 25 24 50 50 H 1.08996 * 109.47194 * 231.36944 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1432 0.8782 1.2280 8 7 5.4540 0.8793 1.3358 9 14 3.0963 0.1099 2.5706 10 1 2.8744 -1.3262 2.2645 11 1 3.7940 0.2358 3.8754 12 1 1.7880 0.8092 2.6394 13 8 1.6559 2.0916 -1.2408 14 6 0.4728 2.7254 -1.2560 15 8 -0.2188 2.7378 -0.2654 16 6 0.0075 3.4225 -2.5084 17 6 0.4069 2.7659 -3.8047 18 8 -0.3352 2.8083 -4.7572 19 8 1.5871 2.1338 -3.9011 20 6 1.9062 1.5247 -5.1800 21 6 1.9264 2.6013 -6.2668 22 6 3.2806 0.8573 -5.0983 23 6 0.8481 0.4740 -5.5226 24 6 -0.0609 4.9507 -2.4824 25 6 -1.3500 4.1268 -2.4622 26 6 -2.1980 4.1105 -3.7355 27 6 -2.1314 4.0690 -1.1481 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8770 0.4815 2.1127 34 1 2.6803 3.3498 -6.0228 35 1 2.1655 2.1440 -7.2269 36 1 0.9475 3.0772 -6.3251 37 1 3.2665 0.0903 -4.3239 38 1 3.5199 0.3997 -6.0582 39 1 4.0342 1.6061 -4.8544 40 1 -0.1309 0.9499 -5.5809 41 1 1.0878 0.0165 -6.4823 42 1 0.8336 -0.2929 -4.7482 43 1 0.2309 5.4520 -1.5596 44 1 0.1829 5.4813 -3.4029 45 1 -2.4177 3.0795 -4.0125 46 1 -3.1308 4.6456 -3.5577 47 1 -1.6497 4.5948 -4.5435 48 1 -1.5418 4.5276 -0.3543 49 1 -3.0717 4.6088 -1.2604 50 1 -2.3375 3.0294 -0.8934 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850978993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:15 Heat of formation + Delta-G solvation = -160.053729 kcal Electronic energy + Delta-G solvation = -31160.912915 eV Core-core repulsion = 27154.255074 eV Total energy + Delta-G solvation = -4006.657841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.54324 -41.36727 -39.64746 -37.85841 -37.02810 -35.56435 -35.02324 -33.93061 -31.06899 -29.77634 -28.43426 -28.35208 -28.25678 -26.90576 -24.94611 -24.07607 -22.65819 -21.69625 -20.75972 -20.20595 -19.36488 -18.58951 -18.13690 -17.59833 -17.31757 -16.88501 -16.65496 -16.02644 -15.53815 -15.38715 -15.30296 -14.99702 -14.72011 -14.55557 -14.49580 -14.28789 -14.10014 -13.89672 -13.50491 -13.38128 -13.21154 -13.17744 -13.13264 -13.00742 -12.90321 -12.82867 -12.79877 -12.59221 -12.47785 -12.26991 -12.18206 -12.03280 -11.68549 -11.52005 -11.46663 -11.43285 -11.34456 -11.14427 -10.84261 -10.74100 -10.68454 -8.43371 -6.50903 0.79513 1.18069 1.22223 1.29506 1.39008 1.59550 1.78867 2.19198 2.40745 2.88512 3.22134 3.37693 3.54383 3.64545 3.74980 3.82110 3.96949 4.03088 4.06197 4.15102 4.17148 4.32119 4.53043 4.56066 4.57804 4.62214 4.71397 4.76935 4.79423 4.84081 4.86457 4.88300 4.90868 4.92342 4.99637 5.00111 5.02121 5.05563 5.11058 5.25971 5.26641 5.28876 5.32129 5.35402 5.44926 5.59607 5.67824 6.15763 6.52882 6.74153 6.88884 7.13412 8.72601 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.005431 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.858923 B = 5153.883977 C = 6563.514707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.203 3.797 4 H 0.032 0.968 5 C -0.532 4.532 6 H 0.045 0.955 7 C 0.033 3.967 8 N -0.930 5.930 9 Si 0.934 3.066 10 H -0.254 1.254 11 H -0.284 1.284 12 H -0.253 1.253 13 O -0.333 6.333 14 C 0.488 3.512 15 O -0.514 6.514 16 C -0.185 4.185 17 C 0.510 3.490 18 O -0.494 6.494 19 O -0.344 6.344 20 C 0.103 3.897 21 C -0.173 4.173 22 C -0.138 4.138 23 C -0.175 4.175 24 C -0.104 4.104 25 C -0.040 4.040 26 C -0.100 4.100 27 C -0.106 4.106 28 H 0.072 0.928 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.274 0.726 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.108 0.892 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.206 4.324 -13.440 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.149 3.851 4 H 0.050 0.950 5 C -0.570 4.570 6 H 0.063 0.937 7 C -0.167 4.167 8 N -0.568 5.568 9 Si 0.759 3.241 10 H -0.179 1.179 11 H -0.210 1.210 12 H -0.177 1.177 13 O -0.248 6.248 14 C 0.332 3.668 15 O -0.404 6.404 16 C -0.187 4.187 17 C 0.354 3.646 18 O -0.384 6.384 19 O -0.260 6.260 20 C 0.067 3.933 21 C -0.230 4.230 22 C -0.195 4.195 23 C -0.232 4.232 24 C -0.141 4.141 25 C -0.040 4.040 26 C -0.157 4.157 27 C -0.163 4.163 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.126 0.874 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.138 0.862 44 H 0.155 0.845 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.076 0.924 49 H 0.109 0.891 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.383 4.223 -13.339 20.066 hybrid contribution 0.638 -0.710 0.982 1.369 sum -13.744 3.513 -12.357 18.814 Atomic orbital electron populations 1.21782 0.94588 1.01875 1.01266 1.22251 0.96413 0.97746 1.01809 1.20661 0.94037 0.89554 0.80894 0.95014 1.20917 0.89602 1.39540 1.06937 0.93717 1.25507 0.96015 0.95611 0.99561 1.69957 1.10297 1.45614 1.30933 0.86066 0.79511 0.80215 0.78277 1.17907 1.21025 1.17745 1.86612 1.35074 1.62369 1.40725 1.22264 0.79868 0.76298 0.88367 1.90603 1.55219 1.58816 1.35764 1.21076 1.09664 0.99520 0.88453 1.21723 0.79546 0.75652 0.87720 1.90538 1.52081 1.57360 1.38394 1.86784 1.36112 1.63909 1.39210 1.22555 0.96724 0.93619 0.80368 1.22418 1.03558 0.98461 0.98518 1.21856 0.93371 1.00562 1.03752 1.22426 0.99544 0.98079 1.03140 1.23684 0.99055 0.84608 1.06704 1.22120 0.86524 0.94945 1.00458 1.21452 0.98921 1.02792 0.92541 1.21457 0.99731 1.02535 0.92575 0.90916 0.92881 0.94110 0.91501 0.92213 0.91645 0.92271 0.88649 0.90770 0.93099 0.87398 0.92371 0.90972 0.88480 0.93232 0.86153 0.84453 0.92313 0.89470 0.91197 0.92429 0.89141 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 8.57 71.98 0.62 -4.64 16 2 C -0.14 -6.51 5.15 30.59 0.16 -6.36 16 3 C 0.20 10.30 1.84 29.85 0.05 10.35 16 4 H 0.03 1.69 6.21 -2.39 -0.01 1.68 16 5 C -0.53 -31.44 9.48 25.60 0.24 -31.20 16 6 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 7 C 0.03 1.90 5.45 84.66 0.46 2.36 16 8 N -0.93 -57.02 13.96 21.45 0.30 -56.72 16 9 Si 0.93 44.26 24.41 68.60 1.67 45.94 16 10 H -0.25 -11.19 6.83 99.48 0.68 -10.51 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.25 -11.63 6.53 99.48 0.65 -10.98 16 13 O -0.33 -15.71 8.35 -45.35 -0.38 -16.09 16 14 C 0.49 19.55 5.92 71.23 0.42 19.98 16 15 O -0.51 -21.02 10.26 21.98 0.23 -20.80 16 16 C -0.18 -5.82 2.59 -53.67 -0.14 -5.96 16 17 C 0.51 16.27 6.78 71.23 0.48 16.75 16 18 O -0.49 -14.35 8.61 21.97 0.19 -14.16 16 19 O -0.34 -12.07 8.43 -45.35 -0.38 -12.45 16 20 C 0.10 2.80 1.13 -10.79 -0.01 2.79 16 21 C -0.17 -3.84 8.37 71.98 0.60 -3.24 16 22 C -0.14 -3.62 8.85 71.98 0.64 -2.99 16 23 C -0.17 -4.28 8.37 71.98 0.60 -3.68 16 24 C -0.10 -2.46 9.23 30.59 0.28 -2.17 16 25 C -0.04 -0.96 2.70 -52.18 -0.14 -1.11 16 26 C -0.10 -1.98 8.09 71.98 0.58 -1.40 16 27 C -0.11 -2.52 8.09 71.98 0.58 -1.94 16 28 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16 30 H 0.04 1.56 6.06 -2.39 -0.01 1.54 16 31 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 32 H 0.06 2.72 3.22 -2.39 -0.01 2.71 16 33 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.77 5.89 -2.39 -0.01 1.75 16 37 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.90 5.89 -2.39 -0.01 1.88 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.12 2.77 8.05 -2.39 -0.02 2.75 16 44 H 0.14 2.58 8.05 -2.39 -0.02 2.56 16 45 H 0.06 1.34 7.26 -2.39 -0.02 1.32 16 46 H 0.09 1.25 7.92 -2.39 -0.02 1.24 16 47 H 0.07 1.36 7.02 -2.39 -0.02 1.35 16 48 H 0.06 1.52 7.02 -2.39 -0.02 1.51 16 49 H 0.09 1.55 7.92 -2.38 -0.02 1.53 16 50 H 0.05 1.52 7.26 -2.39 -0.02 1.50 16 Total: -1.00 -69.10 380.30 7.90 -61.20 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.84 Total: 25.54 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: 5.44 Total: -12.45 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.30 Total: -56.72 kcal Atomic # 8 Polarization: -63.16 SS G_CDS: -0.35 Total: -63.50 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.94 kcal Total: -69.10 7.90 -61.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850978993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.857 kcal (2) G-P(sol) polarization free energy of solvation -69.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds