Wall clock time and date at job start Tue Mar 31 2020 14:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48491 * 109.47352 * 240.00219 * 3 2 1 5 5 H 1.48504 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46813 * 119.99766 * 3 2 1 7 7 C 1.37876 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99910 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49664 * 59.92240 * 9 7 2 11 11 C 1.53116 * 109.50551 * 299.80917 * 9 7 2 12 12 C 1.53116 * 109.16327 * 182.40657 * 11 9 7 13 13 C 1.53030 * 109.28089 * 57.64783 * 12 11 9 14 14 N 1.46849 * 109.52612 * 300.82372 * 13 12 11 15 15 C 1.46900 * 111.00059 * 185.83883 * 14 13 12 16 16 C 1.50693 * 109.47561 * 45.78940 * 15 14 13 17 17 C 1.35353 * 126.74909 * 94.99222 * 16 15 14 18 18 N 1.35314 * 106.17213 * 180.02562 * 17 16 15 19 19 C 1.46502 * 125.86476 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47342 * 125.00375 * 19 18 17 21 21 C 1.38234 * 120.00271 * 89.99356 * 20 19 18 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 19 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 269.97484 * 20 19 18 26 26 N 1.28713 * 108.26692 * 0.26912 * 18 17 16 27 27 N 1.28634 * 110.17376 * 359.55910 * 26 18 17 28 28 C 1.46848 * 111.19390 * 61.74209 * 14 13 12 29 29 H 0.97001 * 120.00419 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.52184 * 302.30665 * 11 9 7 31 31 H 1.08999 * 109.52256 * 62.49300 * 11 9 7 32 32 H 1.08994 * 109.50449 * 177.59643 * 12 11 9 33 33 H 1.09005 * 109.49625 * 297.70880 * 12 11 9 34 34 H 1.08995 * 109.46416 * 180.80808 * 13 12 11 35 35 H 1.09000 * 109.46226 * 60.84399 * 13 12 11 36 36 H 1.09005 * 109.46921 * 285.78697 * 15 14 13 37 37 H 1.09001 * 109.46857 * 165.79164 * 15 14 13 38 38 H 1.08002 * 126.91612 * 0.05315 * 17 16 15 39 39 H 1.09003 * 109.47301 * 4.99764 * 19 18 17 40 40 H 1.09009 * 109.47099 * 244.99920 * 19 18 17 41 41 H 1.08001 * 119.99769 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 44 44 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00489 * 0.02562 * 25 20 19 46 46 H 1.08995 * 109.46480 * 58.27570 * 28 14 13 47 47 H 1.09008 * 109.46206 * 178.24526 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6228 -2.5565 -0.8895 11 6 0.3745 -2.5835 1.2521 12 6 -0.3410 -3.9370 1.2747 13 6 0.6989 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0200 15 6 2.4282 -6.0739 -0.1194 16 6 1.6825 -7.3552 0.1508 17 6 1.1090 -8.1675 -0.7674 18 7 0.5574 -9.1901 -0.0739 19 6 -0.1756 -10.3207 -0.6491 20 6 0.4521 -11.6118 -0.1907 21 6 0.0149 -12.2184 0.9720 22 6 0.5903 -13.4029 1.3921 23 6 1.6026 -13.9813 0.6493 24 6 2.0391 -13.3753 -0.5140 25 6 1.4648 -12.1897 -0.9332 26 7 0.7828 -8.9962 1.1784 27 7 1.4566 -7.9132 1.3454 28 6 2.2449 -3.6629 -0.0011 29 1 -0.4851 0.8400 0.0004 30 1 0.9986 -2.4866 2.1406 31 1 -0.3634 -1.7815 1.2350 32 1 -0.9335 -4.0202 2.1857 33 1 -0.9947 -4.0174 0.4062 34 1 0.1923 -6.0240 1.2386 35 1 1.3436 -4.9862 2.1130 36 1 3.2457 -5.9718 0.5944 37 1 2.8307 -6.0944 -1.1322 38 1 1.0948 -8.0279 -1.8383 39 1 -0.1362 -10.2636 -1.7369 40 1 -1.2144 -10.2851 -0.3208 41 1 -0.7763 -11.7667 1.5521 42 1 0.2485 -13.8771 2.3002 43 1 2.0552 -14.9045 0.9798 44 1 2.8302 -13.8268 -1.0941 45 1 1.8065 -11.7158 -1.8415 46 1 2.8823 -3.5966 0.8805 47 1 2.8610 -3.6139 -0.8990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:58 Heat of formation + Delta-G solvation = 127.013256 kcal Electronic energy + Delta-G solvation = -26783.643618 eV Core-core repulsion = 23161.328357 eV Total energy + Delta-G solvation = -3622.315261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.23198 -39.67296 -38.12738 -35.34275 -33.89822 -32.12490 -31.67150 -31.35059 -30.59582 -29.65062 -27.30464 -26.11110 -24.85822 -23.07567 -22.71927 -22.34500 -21.71446 -21.17309 -20.28785 -18.47284 -17.58132 -17.16581 -16.55072 -16.26112 -15.62498 -15.45037 -14.91892 -14.87155 -14.48417 -14.30216 -13.86220 -13.66359 -13.53094 -13.19705 -13.11105 -12.97992 -12.77758 -12.35734 -11.99170 -11.83433 -11.72178 -11.50266 -11.46947 -11.24913 -10.88592 -10.69100 -10.63739 -10.60049 -10.17333 -9.87325 -9.73098 -9.38970 -9.35856 -9.33939 -9.15272 -8.91564 -8.63590 -8.23831 -7.56818 -5.91790 -3.97826 0.72301 0.98042 1.64628 2.36186 2.62120 3.36163 3.40634 3.41064 3.43206 3.95425 4.17527 4.41088 4.48028 4.55091 4.61059 4.68022 4.77446 4.81940 4.94693 5.05224 5.14892 5.18773 5.38145 5.46238 5.54738 5.59863 5.76311 5.91635 5.94335 5.98712 6.05689 6.08161 6.15286 6.23318 6.24289 6.43371 6.50430 6.51930 6.56900 6.63130 6.84651 6.85953 7.04361 7.30732 7.47602 7.75481 7.80961 7.88092 8.15120 8.24304 8.54430 8.60314 9.06105 9.66005 11.14160 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.038669 B = 0.002098 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.928697 B =13340.015175 C =13589.935258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.067 3.933 14 N -0.533 5.533 15 C 0.136 3.864 16 C -0.005 4.005 17 C -0.038 4.038 18 N -0.294 5.294 19 C 0.160 3.840 20 C -0.116 4.116 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.107 4.107 24 C -0.125 4.125 25 C -0.097 4.097 26 N -0.084 5.084 27 N -0.263 5.263 28 C 0.067 3.933 29 H 0.259 0.741 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.087 0.913 38 H 0.190 0.810 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.021 0.979 47 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.088 -27.794 -3.217 27.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.061 4.061 14 N -0.259 5.259 15 C 0.007 3.993 16 C -0.142 4.142 17 C -0.188 4.188 18 N -0.088 5.088 19 C 0.039 3.961 20 C -0.117 4.117 21 C -0.099 4.099 22 C -0.141 4.141 23 C -0.125 4.125 24 C -0.143 4.143 25 C -0.116 4.116 26 N -0.063 5.063 27 N -0.131 5.131 28 C -0.059 4.059 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.064 0.936 37 H 0.105 0.895 38 H 0.207 0.793 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.040 0.960 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.778 -28.217 -2.207 28.313 hybrid contribution 1.097 1.170 -0.435 1.662 sum 0.319 -27.047 -2.642 27.177 Atomic orbital electron populations 1.69886 1.05830 1.26355 1.50670 1.24935 0.94823 0.98912 0.95208 0.86692 0.79601 0.83339 0.78528 1.20329 1.21386 1.20397 1.21118 0.92797 0.90673 1.50683 0.92861 1.18647 0.92597 0.90173 0.94828 0.94803 1.21648 0.99994 0.94670 0.98498 1.21676 0.97286 0.96618 0.99867 1.22016 0.95503 0.98490 0.90047 1.62219 1.23588 1.01640 1.38426 1.20362 0.92814 0.84809 1.01354 1.21913 1.03970 0.99315 0.89047 1.23367 1.03606 0.91037 1.00833 1.47338 1.37473 1.17943 1.06041 1.20892 0.95598 0.80280 0.99283 1.19679 0.98986 0.95869 0.97202 1.21104 0.99352 0.94792 0.94683 1.21194 0.96928 0.95947 1.00001 1.21271 0.96584 0.99836 0.94858 1.21147 1.00194 0.95827 0.97119 1.21071 0.95186 0.95695 0.99600 1.78255 1.15896 1.14026 0.98095 1.75129 1.12240 1.02226 1.23461 1.22337 0.96496 0.88189 0.98917 0.93061 0.95146 0.89229 0.93761 0.92466 0.92338 0.95621 0.93579 0.89461 0.79312 0.86815 0.87551 0.85464 0.85622 0.85836 0.85751 0.85881 0.96046 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 11.36 55.43 0.63 -25.02 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.22 8.56 -34.44 -0.29 -14.52 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.06 1.43 2.26 -91.69 -0.21 1.23 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.71 5.03 -26.61 -0.13 -2.85 16 12 C -0.12 -2.47 6.09 -26.66 -0.16 -2.64 16 13 C 0.07 1.34 4.90 -3.84 -0.02 1.32 16 14 N -0.53 -10.26 4.80 -236.12 -1.13 -11.40 16 15 C 0.14 2.16 5.84 -4.98 -0.03 2.13 16 16 C 0.00 -0.08 5.17 -82.78 -0.43 -0.50 16 17 C -0.04 -0.45 11.50 -17.04 -0.20 -0.65 16 18 N -0.29 -3.38 3.43 -62.43 -0.21 -3.59 16 19 C 0.16 1.15 6.58 -5.19 -0.03 1.11 16 20 C -0.12 -0.92 5.25 -104.62 -0.55 -1.47 16 21 C -0.08 -0.65 9.70 -39.59 -0.38 -1.04 16 22 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 23 C -0.11 -0.74 10.05 -39.58 -0.40 -1.14 16 24 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.10 -0.71 9.70 -39.58 -0.38 -1.10 16 26 N -0.08 -1.26 12.93 60.35 0.78 -0.48 16 27 N -0.26 -4.48 11.18 33.28 0.37 -4.11 16 28 C 0.07 1.46 4.65 -3.83 -0.02 1.44 16 29 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.14 5.80 -51.93 -0.30 0.84 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.11 0.47 8.01 -51.93 -0.42 0.06 16 40 H 0.11 0.63 8.09 -51.92 -0.42 0.21 16 41 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 45 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 1.25 8.12 -51.92 -0.42 0.83 16 LS Contribution 380.91 15.07 5.74 5.74 Total: -1.00 -32.76 380.91 -10.31 -43.07 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -7.34 Total: -1.07 kcal Atomic # 6 Polarization: -15.45 SS G_CDS: -4.13 Total: -19.58 kcal Atomic # 7 Polarization: -45.04 SS G_CDS: 0.43 Total: -44.60 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.76 -10.31 -43.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.086 kcal (2) G-P(sol) polarization free energy of solvation -32.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds