Wall clock time and date at job start Tue Mar 31 2020 14:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00017 * 2 1 4 4 H 1.48491 * 109.47352 * 240.00219 * 3 2 1 5 5 H 1.48504 * 109.47028 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46813 * 119.99766 * 3 2 1 7 7 C 1.37876 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00222 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99910 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.49664 * 59.92240 * 9 7 2 11 11 C 1.53116 * 109.50551 * 299.80917 * 9 7 2 12 12 C 1.53116 * 109.16327 * 182.40657 * 11 9 7 13 13 C 1.53030 * 109.28089 * 57.64783 * 12 11 9 14 14 N 1.46849 * 109.52612 * 300.82372 * 13 12 11 15 15 C 1.46900 * 111.00059 * 185.83883 * 14 13 12 16 16 C 1.50693 * 109.47561 * 45.78940 * 15 14 13 17 17 C 1.35353 * 126.74909 * 94.99222 * 16 15 14 18 18 N 1.35314 * 106.17213 * 180.02562 * 17 16 15 19 19 C 1.46502 * 125.86476 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.47342 * 125.00375 * 19 18 17 21 21 C 1.38234 * 120.00271 * 89.99356 * 20 19 18 22 22 C 1.38230 * 119.99880 * 179.97438 * 21 20 19 23 23 C 1.38235 * 120.00326 * 359.97438 * 22 21 20 24 24 C 1.38234 * 119.99814 * 359.97438 * 23 22 21 25 25 C 1.38234 * 119.99485 * 269.97484 * 20 19 18 26 26 N 1.28713 * 108.26692 * 0.26912 * 18 17 16 27 27 N 1.28634 * 110.17376 * 359.55910 * 26 18 17 28 28 C 1.46848 * 111.19390 * 61.74209 * 14 13 12 29 29 H 0.97001 * 120.00419 * 359.97438 * 1 2 3 30 30 H 1.09007 * 109.52184 * 302.30665 * 11 9 7 31 31 H 1.08999 * 109.52256 * 62.49300 * 11 9 7 32 32 H 1.08994 * 109.50449 * 177.59643 * 12 11 9 33 33 H 1.09005 * 109.49625 * 297.70880 * 12 11 9 34 34 H 1.08995 * 109.46416 * 180.80808 * 13 12 11 35 35 H 1.09000 * 109.46226 * 60.84399 * 13 12 11 36 36 H 1.09005 * 109.46921 * 285.78697 * 15 14 13 37 37 H 1.09001 * 109.46857 * 165.79164 * 15 14 13 38 38 H 1.08002 * 126.91612 * 0.05315 * 17 16 15 39 39 H 1.09003 * 109.47301 * 4.99764 * 19 18 17 40 40 H 1.09009 * 109.47099 * 244.99920 * 19 18 17 41 41 H 1.08001 * 119.99769 * 359.97438 * 21 20 19 42 42 H 1.08000 * 120.00376 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00616 * 179.72578 * 23 22 21 44 44 H 1.08001 * 120.00299 * 179.97438 * 24 23 22 45 45 H 1.07997 * 120.00489 * 0.02562 * 25 20 19 46 46 H 1.08995 * 109.46480 * 58.27570 * 28 14 13 47 47 H 1.09008 * 109.46206 * 178.24526 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6228 -2.5565 -0.8895 11 6 0.3745 -2.5835 1.2521 12 6 -0.3410 -3.9370 1.2747 13 6 0.6989 -5.0590 1.2371 14 7 1.5112 -4.9348 0.0200 15 6 2.4282 -6.0739 -0.1194 16 6 1.6825 -7.3552 0.1508 17 6 1.1090 -8.1675 -0.7674 18 7 0.5574 -9.1901 -0.0739 19 6 -0.1756 -10.3207 -0.6491 20 6 0.4521 -11.6118 -0.1907 21 6 0.0149 -12.2184 0.9720 22 6 0.5903 -13.4029 1.3921 23 6 1.6026 -13.9813 0.6493 24 6 2.0391 -13.3753 -0.5140 25 6 1.4648 -12.1897 -0.9332 26 7 0.7828 -8.9962 1.1784 27 7 1.4566 -7.9132 1.3454 28 6 2.2449 -3.6629 -0.0011 29 1 -0.4851 0.8400 0.0004 30 1 0.9986 -2.4866 2.1406 31 1 -0.3634 -1.7815 1.2350 32 1 -0.9335 -4.0202 2.1857 33 1 -0.9947 -4.0174 0.4062 34 1 0.1923 -6.0240 1.2386 35 1 1.3436 -4.9862 2.1130 36 1 3.2457 -5.9718 0.5944 37 1 2.8307 -6.0944 -1.1322 38 1 1.0948 -8.0279 -1.8383 39 1 -0.1362 -10.2636 -1.7369 40 1 -1.2144 -10.2851 -0.3208 41 1 -0.7763 -11.7667 1.5521 42 1 0.2485 -13.8771 2.3002 43 1 2.0552 -14.9045 0.9798 44 1 2.8302 -13.8268 -1.0941 45 1 1.8065 -11.7158 -1.8415 46 1 2.8823 -3.5966 0.8805 47 1 2.8610 -3.6139 -0.8990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:57 Heat of formation + Delta-G solvation = 107.798125 kcal Electronic energy + Delta-G solvation = -26784.476848 eV Core-core repulsion = 23161.328357 eV Total energy + Delta-G solvation = -3623.148491 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.22360 -40.21367 -39.76383 -36.35020 -35.47712 -33.85465 -32.40035 -32.03118 -31.83838 -31.43660 -28.00170 -27.44162 -26.88120 -23.92888 -23.56921 -23.50453 -23.25530 -22.27336 -21.36970 -20.31994 -18.51207 -18.23605 -17.86819 -17.29046 -16.74366 -16.37189 -16.17269 -15.89685 -15.83328 -15.70582 -15.04611 -14.86031 -14.60422 -14.36070 -14.33798 -14.02487 -13.82166 -13.64896 -13.45713 -13.32038 -13.01762 -12.80208 -12.67799 -12.52848 -12.36022 -12.20691 -11.98766 -11.85652 -11.72438 -11.70862 -11.36511 -10.96370 -10.87342 -10.64563 -10.34886 -10.16512 -9.87671 -9.86172 -9.13199 -8.04613 -6.18407 0.16841 0.45453 0.72035 1.44028 1.45808 1.48655 1.53314 1.64675 2.46039 2.87103 3.19541 3.22470 3.35059 3.53426 3.72407 3.91789 4.06958 4.11226 4.19433 4.21720 4.23523 4.28983 4.34248 4.42831 4.52904 4.56957 4.62387 4.65345 4.71709 4.76672 4.91595 4.94959 4.99683 4.99937 5.08914 5.12769 5.17866 5.19659 5.37195 5.48129 5.52718 5.54326 5.56861 5.66224 5.71860 5.97560 6.02870 6.12375 6.21020 6.29218 6.48041 6.93816 7.49089 7.57282 9.00104 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.038669 B = 0.002098 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.928697 B =13340.015175 C =13589.935258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.003 0.997 11 C -0.102 4.102 12 C -0.109 4.109 13 C 0.081 3.919 14 N -0.535 5.535 15 C 0.140 3.860 16 C -0.034 4.034 17 C -0.016 4.016 18 N -0.281 5.281 19 C 0.151 3.849 20 C -0.127 4.127 21 C -0.099 4.099 22 C -0.136 4.136 23 C -0.115 4.115 24 C -0.135 4.135 25 C -0.105 4.105 26 N -0.107 5.107 27 N -0.304 5.304 28 C 0.080 3.920 29 H 0.260 0.740 30 H 0.018 0.982 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.012 0.988 36 H 0.037 0.963 37 H 0.116 0.884 38 H 0.231 0.769 39 H 0.152 0.848 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.013 0.987 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -29.254 -4.820 29.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.021 0.979 11 C -0.141 4.141 12 C -0.147 4.147 13 C -0.047 4.047 14 N -0.260 5.260 15 C 0.011 3.989 16 C -0.173 4.173 17 C -0.167 4.167 18 N -0.075 5.075 19 C 0.033 3.967 20 C -0.128 4.128 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.133 4.133 24 C -0.153 4.153 25 C -0.123 4.123 26 N -0.086 5.086 27 N -0.171 5.171 28 C -0.047 4.047 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.055 0.945 37 H 0.134 0.866 38 H 0.247 0.753 39 H 0.169 0.831 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.031 0.969 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.088 -29.717 -3.800 29.959 hybrid contribution 0.847 1.499 0.029 1.722 sum 0.758 -28.218 -3.772 28.479 Atomic orbital electron populations 1.70031 1.07192 1.27083 1.51241 1.25734 0.95668 1.02358 0.94858 0.85667 0.78381 0.79098 0.78816 1.19342 1.21099 1.19949 1.21494 0.93091 0.92010 1.50712 0.92764 1.18567 0.92948 0.91330 0.93550 0.97910 1.21466 0.99162 0.95751 0.97697 1.21580 0.97502 0.95200 1.00394 1.21834 0.94941 0.97973 0.89966 1.62159 1.24225 1.01852 1.37753 1.20394 0.91896 0.83864 1.02729 1.21904 1.05864 0.99874 0.89610 1.23910 1.01065 0.89645 1.02110 1.47694 1.36270 1.18434 1.05125 1.21361 0.95523 0.78560 1.01265 1.19796 0.99472 0.96240 0.97305 1.21279 0.99829 0.95409 0.95226 1.21444 0.97249 0.96022 1.00684 1.21576 0.96363 1.00524 0.94865 1.21476 1.00574 0.95902 0.97302 1.21362 0.94884 0.95894 1.00198 1.78182 1.16608 1.13863 0.99972 1.75069 1.13610 1.03382 1.25049 1.22042 0.95378 0.88221 0.99063 0.93118 0.96327 0.92207 0.92328 0.92899 0.91450 0.96922 0.94507 0.86593 0.75254 0.83053 0.86431 0.85661 0.84511 0.84063 0.83965 0.84084 0.96907 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 11.36 21.45 0.24 -53.71 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.95 44.18 29.54 68.60 2.03 46.20 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 7 C -0.53 -29.95 8.56 25.60 0.22 -29.73 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 9 C 0.05 2.85 2.26 -11.49 -0.03 2.82 16 10 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 11 C -0.10 -5.20 5.03 30.67 0.15 -5.04 16 12 C -0.11 -4.65 6.09 30.64 0.19 -4.46 16 13 C 0.08 3.20 4.90 86.32 0.42 3.62 16 14 N -0.53 -20.09 4.80 -900.95 -4.32 -24.42 16 15 C 0.14 4.21 5.84 85.55 0.50 4.71 16 16 C -0.03 -0.98 5.17 41.60 0.22 -0.77 16 17 C -0.02 -0.32 11.50 83.49 0.96 0.64 16 18 N -0.28 -5.77 3.43 -351.44 -1.20 -6.97 16 19 C 0.15 1.73 6.58 85.63 0.56 2.29 16 20 C -0.13 -1.77 5.25 -19.87 -0.10 -1.88 16 21 C -0.10 -1.53 9.70 22.27 0.22 -1.31 16 22 C -0.14 -1.90 10.05 22.27 0.22 -1.67 16 23 C -0.12 -1.42 10.05 22.27 0.22 -1.20 16 24 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 25 C -0.10 -1.29 9.70 22.27 0.22 -1.08 16 26 N -0.11 -3.12 12.93 37.02 0.48 -2.64 16 27 N -0.30 -10.17 11.18 -48.61 -0.54 -10.71 16 28 C 0.08 3.46 4.65 86.32 0.40 3.86 16 29 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 30 H 0.02 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.06 3.38 6.17 -2.39 -0.01 3.36 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.07 2.58 5.80 -2.39 -0.01 2.57 16 35 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.04 1.18 8.08 -2.38 -0.02 1.16 16 37 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.23 2.58 8.06 -2.91 -0.02 2.56 16 39 H 0.15 0.57 8.01 -2.39 -0.02 0.55 16 40 H 0.12 1.11 8.09 -2.38 -0.02 1.09 16 41 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 43 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 45 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 2.91 8.12 -2.38 -0.02 2.89 16 Total: -1.00 -72.71 380.91 2.67 -70.04 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 0.95 Total: 11.64 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 5.05 Total: -29.43 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -5.35 Total: -98.46 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.71 2.67 -70.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.841 kcal (2) G-P(sol) polarization free energy of solvation -72.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds