Wall clock time and date at job start Tue Mar 31 2020 14:38:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00290 * 2 1 4 4 H 1.48493 * 109.47508 * 264.78582 * 3 2 1 5 5 H 1.48506 * 109.46789 * 24.78516 * 3 2 1 6 6 H 1.48497 * 109.47180 * 144.77960 * 3 2 1 7 7 C 1.37882 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 5.49665 * 7 2 1 9 9 C 1.50703 * 119.99956 * 185.50130 * 7 2 1 10 10 H 1.08997 * 109.53439 * 335.10466 * 9 7 2 11 11 C 1.53122 * 109.50022 * 95.20283 * 9 7 2 12 12 C 1.53121 * 109.15561 * 177.59378 * 11 9 7 13 13 C 1.53041 * 109.27947 * 302.34290 * 12 11 9 14 14 N 1.46847 * 109.52171 * 59.18424 * 13 12 11 15 15 C 1.46897 * 110.99863 * 174.16130 * 14 13 12 16 16 C 1.50699 * 109.47175 * 66.04534 * 15 14 13 17 17 C 1.35349 * 126.75385 * 95.24466 * 16 15 14 18 18 N 1.35314 * 106.17341 * 180.12296 * 17 16 15 19 19 C 1.46502 * 125.86624 * 179.90446 * 18 17 16 20 20 C 1.50705 * 109.46923 * 124.71486 * 19 18 17 21 21 C 1.38239 * 119.99679 * 90.00518 * 20 19 18 22 22 C 1.38228 * 119.99740 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00251 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00138 * 0.07657 * 23 22 21 25 25 C 1.38231 * 120.00252 * 269.97698 * 20 19 18 26 26 N 1.28717 * 108.26428 * 359.64194 * 18 17 16 27 27 N 1.28633 * 110.17843 * 0.22552 * 26 18 17 28 28 C 1.46851 * 111.19527 * 298.25770 * 14 13 12 29 29 H 0.97004 * 119.99675 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.52441 * 57.69217 * 11 9 7 31 31 H 1.09002 * 109.57371 * 297.52939 * 11 9 7 32 32 H 1.09000 * 109.49976 * 182.40100 * 12 11 9 33 33 H 1.08998 * 109.50586 * 62.28971 * 12 11 9 34 34 H 1.08991 * 109.46161 * 299.16615 * 13 12 11 35 35 H 1.09001 * 109.46053 * 179.19614 * 13 12 11 36 36 H 1.08998 * 109.47068 * 306.04520 * 15 14 13 37 37 H 1.08999 * 109.47123 * 186.04570 * 15 14 13 38 38 H 1.07997 * 126.91226 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.47104 * 4.72231 * 19 18 17 40 40 H 1.08995 * 109.47587 * 244.71754 * 19 18 17 41 41 H 1.08003 * 120.00031 * 359.96959 * 21 20 19 42 42 H 1.08004 * 119.99843 * 179.71933 * 22 21 20 43 43 H 1.08000 * 120.00281 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.99994 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.00136 * 359.97438 * 25 20 19 46 46 H 1.09002 * 109.45974 * 181.76353 * 28 14 13 47 47 H 1.09004 * 109.46012 * 301.72608 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3958 2.6820 0.5870 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1272 -0.0905 9 6 3.5063 -1.1971 0.1246 10 1 3.9036 -0.2463 -0.2305 11 6 3.8966 -1.3984 1.5915 12 6 5.4226 -1.4605 1.7014 13 6 5.9473 -2.5941 0.8173 14 7 5.5484 -2.3549 -0.5756 15 6 6.1510 -3.3488 -1.4738 16 6 5.5846 -4.7113 -1.1677 17 6 4.5458 -5.3152 -1.7906 18 7 4.3901 -6.5157 -1.1860 19 6 3.3809 -7.5225 -1.5240 20 6 4.0605 -8.8334 -1.8255 21 6 4.2918 -9.7417 -0.8094 22 6 4.9147 -10.9443 -1.0861 23 6 5.3057 -11.2389 -2.3788 24 6 5.0753 -10.3302 -3.3947 25 6 4.4519 -9.1278 -3.1181 26 7 5.2844 -6.6234 -0.2666 27 7 6.0130 -5.5639 -0.2300 28 6 4.0865 -2.3383 -0.7138 29 1 -0.4850 0.8401 -0.0004 30 1 3.4669 -2.3305 1.9581 31 1 3.5220 -0.5656 2.1866 32 1 5.7055 -1.6463 2.7375 33 1 5.8501 -0.5137 1.3712 34 1 5.5303 -3.5421 1.1568 35 1 7.0347 -2.6317 0.8823 36 1 7.2310 -3.3630 -1.3277 37 1 5.9277 -3.0865 -2.5080 38 1 3.9583 -4.9181 -2.6052 39 1 2.8194 -7.1947 -2.3989 40 1 2.7001 -7.6513 -0.6826 41 1 3.9860 -9.5117 0.2005 42 1 5.0995 -11.6521 -0.2915 43 1 5.7928 -12.1783 -2.5949 44 1 5.3812 -10.5601 -4.4046 45 1 4.2704 -8.4185 -3.9121 46 1 3.8224 -2.1904 -1.7610 47 1 3.6782 -3.2877 -0.3671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852319208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:01 Heat of formation + Delta-G solvation = 122.702878 kcal Electronic energy + Delta-G solvation = -27414.319084 eV Core-core repulsion = 23791.816911 eV Total energy + Delta-G solvation = -3622.502173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.16029 -39.61291 -38.38174 -35.26397 -33.91632 -32.34416 -31.61127 -31.29162 -30.49074 -30.13791 -27.26338 -26.28280 -24.96323 -23.04698 -22.76048 -22.41839 -21.74480 -20.94269 -20.44896 -18.68576 -17.50429 -17.10798 -16.76473 -16.42158 -15.58219 -15.42162 -15.10953 -14.86803 -14.40831 -14.23266 -13.88393 -13.78143 -13.65595 -13.30398 -13.01929 -12.91475 -12.77969 -12.51755 -12.43886 -11.88693 -11.73215 -11.61054 -11.41577 -11.33314 -11.04590 -10.94444 -10.69393 -10.48336 -10.16516 -9.93866 -9.78646 -9.54472 -9.29461 -9.27513 -9.24459 -9.03918 -8.86122 -8.47384 -7.83923 -6.06508 -4.05349 0.78924 1.04132 1.71668 2.44570 2.69266 3.33697 3.41378 3.46816 3.47563 4.04562 4.26393 4.45940 4.46827 4.59742 4.62196 4.68680 4.73968 4.92829 5.03021 5.11556 5.16565 5.22399 5.25999 5.52072 5.56132 5.65084 5.68619 5.73875 5.86287 5.96707 6.04490 6.05587 6.13267 6.15773 6.18215 6.26376 6.30684 6.42734 6.51760 6.58137 6.62563 6.64503 6.74073 6.90030 6.98622 7.36459 7.51488 7.62214 7.65957 7.90605 8.54805 8.66305 8.97625 9.57974 11.06764 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.002837 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.380784 B = 9866.292974 C =10544.430688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.071 3.929 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.262 1.262 7 C -0.510 4.510 8 H 0.068 0.932 9 C 0.020 3.980 10 H 0.039 0.961 11 C -0.111 4.111 12 C -0.121 4.121 13 C 0.064 3.936 14 N -0.529 5.529 15 C 0.137 3.863 16 C -0.047 4.047 17 C -0.038 4.038 18 N -0.290 5.290 19 C 0.158 3.842 20 C -0.114 4.114 21 C -0.081 4.081 22 C -0.123 4.123 23 C -0.108 4.108 24 C -0.125 4.125 25 C -0.097 4.097 26 N -0.086 5.086 27 N -0.262 5.262 28 C 0.073 3.927 29 H 0.263 0.737 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.188 0.812 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.065 0.935 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.017 -19.254 -6.835 22.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.187 1.187 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.001 3.999 10 H 0.057 0.943 11 C -0.150 4.150 12 C -0.159 4.159 13 C -0.064 4.064 14 N -0.251 5.251 15 C 0.007 3.993 16 C -0.187 4.187 17 C -0.189 4.189 18 N -0.083 5.083 19 C 0.037 3.963 20 C -0.115 4.115 21 C -0.099 4.099 22 C -0.141 4.141 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.116 4.116 26 N -0.065 5.065 27 N -0.130 5.130 28 C -0.054 4.054 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.205 0.795 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.084 0.916 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 10.572 -19.551 -5.847 22.982 hybrid contribution -0.681 0.595 -0.643 1.110 sum 9.891 -18.955 -6.490 22.344 Atomic orbital electron populations 1.69915 1.06387 1.26968 1.50859 1.25050 0.94656 0.99063 0.94241 0.86824 0.80246 0.83390 0.78907 1.20150 1.21884 1.18675 1.20937 0.89230 0.94341 1.50302 0.91393 1.19156 0.95750 0.94340 0.90666 0.94259 1.21847 0.92216 1.00572 1.00325 1.21697 0.98262 0.98401 0.97525 1.21985 0.99060 0.97391 0.87997 1.62457 1.11736 1.44478 1.06431 1.20675 0.99087 0.81513 0.98044 1.23102 0.98280 1.00182 0.97098 1.23504 1.03321 0.87839 1.04219 1.47336 1.23855 1.13462 1.23643 1.20926 0.87501 0.83964 1.03893 1.19686 1.02323 0.95163 0.94351 1.21113 0.96823 0.93187 0.98800 1.21186 0.98861 0.97123 0.96926 1.21258 0.98837 0.99403 0.93121 1.21137 0.99513 0.94131 0.99524 1.21075 0.97512 0.97117 0.95848 1.78223 0.99667 1.19339 1.09281 1.75062 1.20756 0.98083 1.19050 1.22255 0.83688 0.98917 1.00578 0.92729 0.93559 0.93077 0.93007 0.92066 0.94658 0.91905 0.89674 0.89259 0.79502 0.86712 0.87429 0.85469 0.85640 0.85863 0.85766 0.85873 0.91641 0.95842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.96 55.43 0.77 -26.63 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 21.72 27.01 -169.99 -4.59 17.13 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.26 -6.28 6.80 56.52 0.38 -5.90 16 7 C -0.51 -14.11 8.86 -34.44 -0.31 -14.41 16 8 H 0.07 2.04 8.06 -52.49 -0.42 1.62 16 9 C 0.02 0.48 1.94 -91.69 -0.18 0.30 16 10 H 0.04 0.96 5.27 -51.93 -0.27 0.69 16 11 C -0.11 -2.45 5.27 -26.61 -0.14 -2.59 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 13 C 0.06 1.13 5.10 -3.83 -0.02 1.11 16 14 N -0.53 -9.38 4.86 -236.12 -1.15 -10.52 16 15 C 0.14 2.01 5.94 -4.98 -0.03 1.98 16 16 C -0.05 -0.72 4.81 -82.78 -0.40 -1.12 16 17 C -0.04 -0.50 10.59 -17.05 -0.18 -0.68 16 18 N -0.29 -3.79 3.43 -62.44 -0.21 -4.01 16 19 C 0.16 1.45 6.58 -5.19 -0.03 1.42 16 20 C -0.11 -1.06 5.25 -104.62 -0.55 -1.61 16 21 C -0.08 -0.75 9.70 -39.58 -0.38 -1.13 16 22 C -0.12 -1.01 10.05 -39.59 -0.40 -1.41 16 23 C -0.11 -0.82 10.05 -39.58 -0.40 -1.22 16 24 C -0.13 -0.98 10.05 -39.58 -0.40 -1.37 16 25 C -0.10 -0.82 9.70 -39.58 -0.38 -1.21 16 26 N -0.09 -1.38 12.92 60.35 0.78 -0.60 16 27 N -0.26 -4.52 11.61 33.29 0.39 -4.13 16 28 C 0.07 1.47 4.11 -3.83 -0.02 1.45 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.04 0.68 6.88 -51.93 -0.36 0.33 16 35 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 36 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 39 H 0.11 0.75 8.01 -51.93 -0.42 0.33 16 40 H 0.11 0.90 8.09 -51.93 -0.42 0.48 16 41 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 47 H 0.02 0.50 6.75 -51.93 -0.35 0.15 16 LS Contribution 379.01 15.07 5.71 5.71 Total: -1.00 -33.59 379.01 -9.67 -43.26 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.30 Total: 0.77 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -4.07 Total: -20.97 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.58 Total: -45.90 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.59 Total: 17.13 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.59 -9.67 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.967 kcal (2) G-P(sol) polarization free energy of solvation -33.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds