Wall clock time and date at job start Tue Mar 31 2020 14:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00290 * 2 1 4 4 H 1.48493 * 109.47508 * 264.78582 * 3 2 1 5 5 H 1.48506 * 109.46789 * 24.78516 * 3 2 1 6 6 H 1.48497 * 109.47180 * 144.77960 * 3 2 1 7 7 C 1.37882 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99891 * 5.49665 * 7 2 1 9 9 C 1.50703 * 119.99956 * 185.50130 * 7 2 1 10 10 H 1.08997 * 109.53439 * 335.10466 * 9 7 2 11 11 C 1.53122 * 109.50022 * 95.20283 * 9 7 2 12 12 C 1.53121 * 109.15561 * 177.59378 * 11 9 7 13 13 C 1.53041 * 109.27947 * 302.34290 * 12 11 9 14 14 N 1.46847 * 109.52171 * 59.18424 * 13 12 11 15 15 C 1.46897 * 110.99863 * 174.16130 * 14 13 12 16 16 C 1.50699 * 109.47175 * 66.04534 * 15 14 13 17 17 C 1.35349 * 126.75385 * 95.24466 * 16 15 14 18 18 N 1.35314 * 106.17341 * 180.12296 * 17 16 15 19 19 C 1.46502 * 125.86624 * 179.90446 * 18 17 16 20 20 C 1.50705 * 109.46923 * 124.71486 * 19 18 17 21 21 C 1.38239 * 119.99679 * 90.00518 * 20 19 18 22 22 C 1.38228 * 119.99740 * 179.97438 * 21 20 19 23 23 C 1.38232 * 120.00251 * 359.97438 * 22 21 20 24 24 C 1.38235 * 120.00138 * 0.07657 * 23 22 21 25 25 C 1.38231 * 120.00252 * 269.97698 * 20 19 18 26 26 N 1.28717 * 108.26428 * 359.64194 * 18 17 16 27 27 N 1.28633 * 110.17843 * 0.22552 * 26 18 17 28 28 C 1.46851 * 111.19527 * 298.25770 * 14 13 12 29 29 H 0.97004 * 119.99675 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.52441 * 57.69217 * 11 9 7 31 31 H 1.09002 * 109.57371 * 297.52939 * 11 9 7 32 32 H 1.09000 * 109.49976 * 182.40100 * 12 11 9 33 33 H 1.08998 * 109.50586 * 62.28971 * 12 11 9 34 34 H 1.08991 * 109.46161 * 299.16615 * 13 12 11 35 35 H 1.09001 * 109.46053 * 179.19614 * 13 12 11 36 36 H 1.08998 * 109.47068 * 306.04520 * 15 14 13 37 37 H 1.08999 * 109.47123 * 186.04570 * 15 14 13 38 38 H 1.07997 * 126.91226 * 0.02562 * 17 16 15 39 39 H 1.09001 * 109.47104 * 4.72231 * 19 18 17 40 40 H 1.08995 * 109.47587 * 244.71754 * 19 18 17 41 41 H 1.08003 * 120.00031 * 359.96959 * 21 20 19 42 42 H 1.08004 * 119.99843 * 179.71933 * 22 21 20 43 43 H 1.08000 * 120.00281 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.99994 * 179.97438 * 24 23 22 45 45 H 1.07996 * 120.00136 * 359.97438 * 25 20 19 46 46 H 1.09002 * 109.45974 * 181.76353 * 28 14 13 47 47 H 1.09004 * 109.46012 * 301.72608 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6069 1.9828 -1.3942 5 1 1.3958 2.6820 0.5870 6 1 3.4872 1.4745 0.8074 7 6 2.0045 -1.1941 -0.0005 8 1 1.4682 -2.1272 -0.0905 9 6 3.5063 -1.1971 0.1246 10 1 3.9036 -0.2463 -0.2305 11 6 3.8966 -1.3984 1.5915 12 6 5.4226 -1.4605 1.7014 13 6 5.9473 -2.5941 0.8173 14 7 5.5484 -2.3549 -0.5756 15 6 6.1510 -3.3488 -1.4738 16 6 5.5846 -4.7113 -1.1677 17 6 4.5458 -5.3152 -1.7906 18 7 4.3901 -6.5157 -1.1860 19 6 3.3809 -7.5225 -1.5240 20 6 4.0605 -8.8334 -1.8255 21 6 4.2918 -9.7417 -0.8094 22 6 4.9147 -10.9443 -1.0861 23 6 5.3057 -11.2389 -2.3788 24 6 5.0753 -10.3302 -3.3947 25 6 4.4519 -9.1278 -3.1181 26 7 5.2844 -6.6234 -0.2666 27 7 6.0130 -5.5639 -0.2300 28 6 4.0865 -2.3383 -0.7138 29 1 -0.4850 0.8401 -0.0004 30 1 3.4669 -2.3305 1.9581 31 1 3.5220 -0.5656 2.1866 32 1 5.7055 -1.6463 2.7375 33 1 5.8501 -0.5137 1.3712 34 1 5.5303 -3.5421 1.1568 35 1 7.0347 -2.6317 0.8823 36 1 7.2310 -3.3630 -1.3277 37 1 5.9277 -3.0865 -2.5080 38 1 3.9583 -4.9181 -2.6052 39 1 2.8194 -7.1947 -2.3989 40 1 2.7001 -7.6513 -0.6826 41 1 3.9860 -9.5117 0.2005 42 1 5.0995 -11.6521 -0.2915 43 1 5.7928 -12.1783 -2.5949 44 1 5.3812 -10.5601 -4.4046 45 1 4.2704 -8.4185 -3.9121 46 1 3.8224 -2.1904 -1.7610 47 1 3.6782 -3.2877 -0.3671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000852319208.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:00 Heat of formation + Delta-G solvation = 101.853113 kcal Electronic energy + Delta-G solvation = -27415.223197 eV Core-core repulsion = 23791.816911 eV Total energy + Delta-G solvation = -3623.406286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.24376 -40.26908 -39.86144 -36.32965 -35.44026 -34.17187 -32.44569 -32.05828 -31.89921 -31.58623 -28.11923 -27.54755 -26.89062 -24.11238 -23.61965 -23.49089 -22.98445 -22.31303 -21.54342 -20.32562 -18.98165 -18.32832 -17.91537 -17.29161 -16.84650 -16.28837 -16.05932 -15.99657 -15.92571 -15.56053 -15.36847 -15.01900 -14.57655 -14.40773 -14.38992 -14.25101 -13.94152 -13.71322 -13.60490 -13.31879 -12.99927 -12.91611 -12.77684 -12.54012 -12.29070 -12.25770 -12.01580 -11.80847 -11.76202 -11.68273 -11.30365 -11.10559 -10.97544 -10.81691 -10.62230 -10.14347 -9.91267 -9.89610 -9.28038 -8.27057 -6.30077 0.13039 0.41830 0.66760 1.39192 1.40574 1.52337 1.52548 1.59320 2.38925 2.83430 3.06106 3.17823 3.32577 3.50432 3.64989 3.93625 4.02397 4.07046 4.12156 4.18920 4.20268 4.21873 4.26701 4.31268 4.47087 4.52681 4.56442 4.63605 4.72792 4.79615 4.86782 4.91584 4.93673 4.98489 5.01629 5.06201 5.10401 5.19695 5.24352 5.26945 5.44727 5.50938 5.53061 5.56832 5.65212 5.67113 5.74986 5.99300 6.15935 6.27125 6.39638 6.77334 7.36494 7.54064 8.89739 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.019168 B = 0.002837 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.380784 B = 9866.292974 C =10544.430688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.263 1.263 5 H -0.292 1.292 6 H -0.248 1.248 7 C -0.510 4.510 8 H 0.027 0.973 9 C 0.018 3.982 10 H 0.039 0.961 11 C -0.110 4.110 12 C -0.114 4.114 13 C 0.069 3.931 14 N -0.528 5.528 15 C 0.139 3.861 16 C -0.064 4.064 17 C -0.034 4.034 18 N -0.281 5.281 19 C 0.149 3.851 20 C -0.126 4.126 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.112 4.112 24 C -0.132 4.132 25 C -0.106 4.106 26 N -0.111 5.111 27 N -0.293 5.293 28 C 0.089 3.911 29 H 0.265 0.735 30 H 0.028 0.972 31 H 0.038 0.962 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.016 0.984 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.216 0.784 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.140 0.860 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.138 0.862 46 H 0.071 0.929 47 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.086 -19.157 -8.279 24.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.182 4.182 3 Si 0.766 3.234 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.172 1.172 7 C -0.548 4.548 8 H 0.046 0.954 9 C -0.001 4.001 10 H 0.057 0.943 11 C -0.148 4.148 12 C -0.152 4.152 13 C -0.059 4.059 14 N -0.251 5.251 15 C 0.009 3.991 16 C -0.204 4.204 17 C -0.186 4.186 18 N -0.075 5.075 19 C 0.030 3.970 20 C -0.127 4.127 21 C -0.118 4.118 22 C -0.151 4.151 23 C -0.130 4.130 24 C -0.150 4.150 25 C -0.124 4.124 26 N -0.090 5.090 27 N -0.160 5.160 28 C -0.039 4.039 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.034 0.966 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.233 0.767 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.158 0.842 43 H 0.164 0.836 44 H 0.163 0.837 45 H 0.156 0.844 46 H 0.090 0.910 47 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 12.663 -19.494 -7.286 24.360 hybrid contribution -1.393 0.401 -0.208 1.464 sum 11.270 -19.092 -7.494 23.403 Atomic orbital electron populations 1.70058 1.08237 1.27990 1.52830 1.25893 0.95366 1.02895 0.94092 0.85808 0.79240 0.78630 0.79702 1.18750 1.21892 1.17175 1.21174 0.91593 0.92729 1.49324 0.95444 1.19127 0.93010 0.95685 0.92315 0.94325 1.21736 0.95106 0.99109 0.98868 1.21645 0.95120 0.99180 0.99217 1.21950 1.00144 0.95947 0.87878 1.62410 1.09709 1.46058 1.06873 1.20798 0.99468 0.80384 0.98417 1.23271 0.99161 1.00567 0.97398 1.23979 1.02722 0.87609 1.04305 1.47640 1.23401 1.13945 1.22466 1.21299 0.86895 0.83562 1.05240 1.19733 1.03041 0.95058 0.94855 1.21254 0.97707 0.94060 0.98826 1.21448 0.98673 0.97075 0.97930 1.21595 0.98354 1.00311 0.92765 1.21479 0.98977 0.93834 1.00668 1.21333 0.97407 0.97849 0.95851 1.78150 1.00752 1.19483 1.10651 1.74999 1.21942 0.98857 1.20198 1.21900 0.85478 0.96550 0.99973 0.92632 0.95316 0.94315 0.90973 0.91321 0.96595 0.89661 0.88399 0.86850 0.76737 0.83824 0.87161 0.85985 0.84232 0.83627 0.83667 0.84397 0.91011 0.97514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.83 5.47 84.66 0.46 1.30 16 3 Si 0.94 44.42 27.01 68.60 1.85 46.27 16 4 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.25 -11.04 6.80 99.48 0.68 -10.36 16 7 C -0.51 -28.78 8.86 25.60 0.23 -28.56 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.02 0.83 1.94 -11.49 -0.02 0.81 16 10 H 0.04 1.81 5.27 -2.39 -0.01 1.80 16 11 C -0.11 -4.79 5.27 30.68 0.16 -4.63 16 12 C -0.11 -3.98 6.09 30.65 0.19 -3.80 16 13 C 0.07 2.31 5.10 86.33 0.44 2.75 16 14 N -0.53 -17.52 4.86 -900.94 -4.38 -21.89 16 15 C 0.14 3.70 5.94 85.56 0.51 4.21 16 16 C -0.06 -1.87 4.81 41.60 0.20 -1.67 16 17 C -0.03 -0.86 10.59 83.49 0.88 0.02 16 18 N -0.28 -7.17 3.43 -351.46 -1.21 -8.38 16 19 C 0.15 2.63 6.58 85.63 0.56 3.20 16 20 C -0.13 -2.26 5.25 -19.86 -0.10 -2.37 16 21 C -0.10 -1.86 9.70 22.27 0.22 -1.65 16 22 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 23 C -0.11 -1.54 10.05 22.27 0.22 -1.32 16 24 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 25 C -0.11 -1.64 9.70 22.27 0.22 -1.43 16 26 N -0.11 -3.58 12.92 37.02 0.48 -3.10 16 27 N -0.29 -9.99 11.61 -48.60 -0.56 -10.55 16 28 C 0.09 3.49 4.11 86.32 0.35 3.85 16 29 H 0.26 15.45 8.31 -92.71 -0.77 14.67 16 30 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.02 0.60 6.88 -2.39 -0.02 0.58 16 35 H 0.09 2.51 8.06 -2.39 -0.02 2.49 16 36 H 0.10 2.38 8.06 -2.39 -0.02 2.36 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.22 3.97 8.06 -2.91 -0.02 3.94 16 39 H 0.14 1.62 8.01 -2.39 -0.02 1.60 16 40 H 0.11 1.87 8.09 -2.39 -0.02 1.85 16 41 H 0.12 2.27 8.06 -2.91 -0.02 2.24 16 42 H 0.14 1.67 8.06 -2.91 -0.02 1.64 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 46 H 0.07 2.71 8.12 -2.39 -0.02 2.69 16 47 H 0.01 0.28 6.75 -2.38 -0.02 0.27 16 Total: -1.00 -74.09 379.01 2.37 -71.73 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.92 Total: 17.47 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 4.97 Total: -32.76 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -5.37 Total: -102.71 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.85 Total: 46.27 kcal Total: -74.09 2.37 -71.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852319208.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.579 kcal (2) G-P(sol) polarization free energy of solvation -74.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds