Wall clock time and date at job start Tue Mar 31 2020 14:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47191 * 269.99753 * 3 2 1 5 5 H 1.48503 * 109.47544 * 29.99903 * 3 2 1 6 6 H 1.48503 * 109.47254 * 150.00072 * 3 2 1 7 7 C 1.37871 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00038 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00363 * 179.97438 * 7 2 1 10 10 O 1.42895 * 109.47645 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00441 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47297 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47248 * 65.00650 * 12 11 10 14 14 C 1.42893 * 114.00256 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47403 * 179.97438 * 14 13 12 16 16 O 1.45201 * 109.47092 * 64.99995 * 15 14 13 17 17 C 1.34226 * 117.00166 * 180.02562 * 16 15 14 18 18 O 1.20825 * 119.99821 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00152 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.47081 * 59.99751 * 19 17 16 21 21 C 1.53005 * 109.46741 * 299.99842 * 19 17 16 22 22 C 1.52999 * 109.47159 * 239.99525 * 21 19 17 23 23 C 1.52997 * 109.47317 * 300.00546 * 22 21 19 24 24 C 1.53000 * 109.47060 * 59.99960 * 23 22 21 25 25 C 1.52998 * 109.47058 * 179.97438 * 19 17 16 26 26 C 1.52999 * 109.47086 * 60.00158 * 25 19 17 27 27 C 1.52997 * 109.47446 * 59.99803 * 26 25 19 28 28 H 0.97001 * 119.99521 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46763 * 59.99891 * 9 7 2 30 30 H 1.09004 * 109.47156 * 300.00548 * 9 7 2 31 31 H 1.09011 * 109.46795 * 60.00721 * 11 10 9 32 32 H 1.08998 * 109.47642 * 300.01263 * 11 10 9 33 33 H 1.08996 * 109.47012 * 305.00207 * 12 11 10 34 34 H 1.09011 * 109.47127 * 185.00702 * 12 11 10 35 35 H 1.09007 * 109.46899 * 59.99912 * 14 13 12 36 36 H 1.08991 * 109.47587 * 300.00425 * 14 13 12 37 37 H 1.09002 * 109.46994 * 305.00661 * 15 14 13 38 38 H 1.09003 * 109.47505 * 185.00656 * 15 14 13 39 39 H 1.09002 * 109.46935 * 120.00114 * 21 19 17 40 40 H 1.09000 * 109.47360 * 0.02562 * 21 19 17 41 41 H 1.08996 * 109.46929 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.47153 * 299.99641 * 23 22 21 43 43 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47517 * 120.00106 * 24 23 22 45 45 H 1.09004 * 109.46796 * 240.00014 * 24 23 22 46 46 H 1.08993 * 109.46892 * 299.99669 * 25 19 17 47 47 H 1.09001 * 109.47218 * 179.97438 * 26 25 19 48 48 H 1.08994 * 109.47066 * 299.99818 * 26 25 19 49 49 H 1.09001 * 109.47375 * 120.00120 * 27 26 25 50 50 H 1.09000 * 109.47140 * 240.00137 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5413 0.0013 11 6 5.4124 -2.6542 0.0003 12 6 5.8068 -4.1325 0.0012 13 8 5.3787 -4.7405 -1.2191 14 6 5.7004 -6.1290 -1.3207 15 6 5.1970 -6.6725 -2.6594 16 8 5.9179 -6.0308 -3.7442 17 6 5.5929 -6.3986 -4.9935 18 8 4.7340 -7.2289 -5.1746 19 6 6.2991 -5.7760 -6.1702 20 1 7.3672 -5.9833 -6.1041 21 6 6.0716 -4.2630 -6.1592 22 6 5.3653 -3.8441 -7.4502 23 6 6.2340 -4.2206 -8.6521 24 6 6.4614 -5.7335 -8.6630 25 6 5.7449 -6.3662 -7.4683 26 6 4.2456 -6.0757 -7.5614 27 6 4.0176 -4.5628 -7.5508 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8745 -0.6808 -0.8905 31 1 5.8158 -2.1696 0.8895 32 1 5.8145 -2.1717 -0.8905 33 1 5.3316 -4.6348 0.8437 34 1 6.8898 -4.2195 0.0901 35 1 5.2232 -6.6731 -0.5055 36 1 6.7810 -6.2572 -1.2594 37 1 4.1315 -6.4647 -2.7584 38 1 5.3624 -7.7492 -2.6999 39 1 7.0316 -3.7517 -6.0880 40 1 5.4531 -3.9947 -5.3027 41 1 5.2029 -2.7663 -7.4421 42 1 7.1941 -3.7093 -8.5808 43 1 5.7306 -3.9225 -9.5717 44 1 6.0663 -6.1537 -9.5878 45 1 7.5295 -5.9408 -8.5969 46 1 5.9073 -7.4439 -7.4758 47 1 3.8508 -6.4958 -8.4864 48 1 3.7348 -6.5260 -6.7103 49 1 3.5144 -4.2648 -8.4706 50 1 3.3985 -4.2947 -6.6947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:41 Heat of formation + Delta-G solvation = -199.524186 kcal Electronic energy + Delta-G solvation = -28521.556644 eV Core-core repulsion = 24513.187235 eV Total energy + Delta-G solvation = -4008.369409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.46224 -39.57381 -38.09206 -36.74297 -36.19498 -32.67510 -32.07626 -31.58539 -30.98629 -30.85238 -29.06436 -27.32248 -24.56924 -22.80729 -22.72355 -22.22206 -22.16057 -21.78516 -20.84344 -17.91633 -17.34950 -17.03778 -16.87232 -16.72804 -16.66280 -16.07722 -15.86525 -15.57392 -14.96841 -14.94039 -14.54330 -14.25293 -13.88022 -13.40597 -13.08064 -12.83383 -12.76795 -12.40640 -12.40001 -12.27307 -12.25163 -12.22307 -12.18909 -12.00495 -11.86459 -11.81991 -11.27386 -11.01943 -10.98874 -10.78559 -10.73909 -10.57315 -10.42259 -10.10167 -10.06695 -9.86794 -9.76162 -9.51517 -9.15834 -8.84095 -8.45400 -6.09405 -4.08231 2.14049 2.56016 3.26109 3.32645 3.33980 3.68246 4.16729 4.32242 4.37104 4.38233 4.61774 4.72607 4.81733 4.87990 4.97539 4.98050 5.02083 5.04064 5.10629 5.15939 5.18336 5.21789 5.25392 5.32648 5.34304 5.38539 5.41224 5.49100 5.55681 5.62377 5.77485 5.82936 5.83962 5.85893 5.89091 6.04394 6.05522 6.09247 6.10551 6.18375 6.22030 6.25002 6.51667 6.61125 7.01418 7.28752 7.61546 7.71264 8.03448 8.68829 9.02601 9.49811 11.03736 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.002858 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.968648 B = 9793.825474 C =11263.699821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.082 0.918 9 C 0.168 3.832 10 O -0.374 6.374 11 C 0.059 3.941 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.062 3.938 15 C 0.070 3.930 16 O -0.346 6.346 17 C 0.466 3.534 18 O -0.506 6.506 19 C -0.073 4.073 20 H 0.105 0.895 21 C -0.106 4.106 22 C -0.088 4.088 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.068 4.068 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.266 0.734 29 H 0.002 0.998 30 H -0.001 1.001 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.076 0.924 47 H 0.060 0.940 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.489 -13.283 -14.414 26.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.100 0.900 9 C 0.093 3.907 10 O -0.293 6.293 11 C -0.018 4.018 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.015 4.015 15 C -0.004 4.004 16 O -0.263 6.263 17 C 0.309 3.691 18 O -0.394 6.394 19 C -0.092 4.092 20 H 0.123 0.877 21 C -0.144 4.144 22 C -0.107 4.107 23 C -0.152 4.152 24 C -0.149 4.149 25 C -0.086 4.086 26 C -0.165 4.165 27 C -0.156 4.156 28 H 0.076 0.924 29 H 0.020 0.980 30 H 0.017 0.983 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.106 0.894 49 H 0.081 0.919 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.826 -13.465 -14.565 26.668 hybrid contribution 0.593 0.903 0.356 1.137 sum 18.419 -12.562 -14.209 26.438 Atomic orbital electron populations 1.69882 1.06055 1.27047 1.50457 1.24771 0.94812 0.98742 0.94683 0.86845 0.80316 0.83749 0.78796 1.19893 1.20795 1.19115 1.20894 0.88289 0.95338 1.51047 0.89968 1.20604 0.96232 0.79554 0.94284 1.87971 1.16936 1.29382 1.95014 1.22334 0.85764 0.93828 0.99912 1.22559 0.97345 0.93853 0.87060 1.88095 1.80795 1.21274 1.38490 1.22499 0.99669 0.84462 0.94845 1.23123 0.97597 0.96234 0.83450 1.86545 1.60948 1.63544 1.15213 1.23756 0.81296 0.79691 0.84355 1.90592 1.30998 1.31917 1.85934 1.21098 1.00667 0.97279 0.90140 0.87704 1.21559 1.02036 0.92012 0.98795 1.21082 0.95229 1.00084 0.94269 1.21570 0.99764 0.95795 0.98075 1.21544 1.00004 0.95771 0.97616 1.20871 0.96124 0.99611 0.92031 1.21804 0.95240 0.96138 1.03325 1.21614 0.96555 0.95373 1.02094 0.92386 0.98024 0.98331 0.92823 0.93458 0.92537 0.92577 0.91005 0.92549 0.89876 0.89899 0.90515 0.90366 0.90466 0.91856 0.91854 0.91482 0.91908 0.90538 0.92108 0.89426 0.91925 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -15.78 9.99 -34.44 -0.34 -16.13 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.32 16 9 C 0.17 4.40 4.76 36.00 0.17 4.57 16 10 O -0.37 -9.06 10.29 -40.07 -0.41 -9.47 16 11 C 0.06 1.06 6.32 37.16 0.23 1.30 16 12 C 0.07 1.00 6.32 37.16 0.23 1.23 16 13 O -0.37 -6.02 10.28 -48.78 -0.50 -6.52 16 14 C 0.06 0.73 6.33 37.16 0.24 0.97 16 15 C 0.07 0.85 5.84 37.16 0.22 1.07 16 16 O -0.35 -4.59 10.00 -42.01 -0.42 -5.01 16 17 C 0.47 5.89 6.69 36.01 0.24 6.13 16 18 O -0.51 -7.38 13.41 -18.75 -0.25 -7.63 16 19 C -0.07 -0.71 2.67 -91.77 -0.24 -0.95 16 20 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 21 C -0.11 -1.06 5.32 -26.73 -0.14 -1.21 16 22 C -0.09 -0.82 3.20 -90.58 -0.29 -1.11 16 23 C -0.11 -0.86 5.71 -26.73 -0.15 -1.01 16 24 C -0.11 -0.81 5.71 -26.73 -0.15 -0.96 16 25 C -0.07 -0.62 2.37 -90.62 -0.21 -0.84 16 26 C -0.13 -1.35 5.39 -26.73 -0.14 -1.49 16 27 C -0.12 -1.24 5.71 -26.69 -0.15 -1.39 16 28 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 29 H 0.00 0.05 7.20 -51.92 -0.37 -0.32 16 30 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 31 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 38 H 0.08 0.83 8.13 -51.93 -0.42 0.40 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 1.14 5.52 -51.93 -0.29 0.86 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 392.72 15.07 5.92 5.92 Total: -1.00 -34.83 392.72 -9.22 -44.05 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -9.06 Total: -3.26 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.60 Total: -7.77 kcal Atomic # 7 Polarization: -28.06 SS G_CDS: 0.77 Total: -27.28 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.59 Total: -28.64 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.83 -9.22 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.470 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds