Wall clock time and date at job start Tue Mar 31 2020 14:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99870 * 2 1 4 4 H 1.48506 * 109.47191 * 269.99753 * 3 2 1 5 5 H 1.48503 * 109.47544 * 29.99903 * 3 2 1 6 6 H 1.48503 * 109.47254 * 150.00072 * 3 2 1 7 7 C 1.37871 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00038 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00363 * 179.97438 * 7 2 1 10 10 O 1.42895 * 109.47645 * 179.97438 * 9 7 2 11 11 C 1.42896 * 114.00441 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47297 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.47248 * 65.00650 * 12 11 10 14 14 C 1.42893 * 114.00256 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47403 * 179.97438 * 14 13 12 16 16 O 1.45201 * 109.47092 * 64.99995 * 15 14 13 17 17 C 1.34226 * 117.00166 * 180.02562 * 16 15 14 18 18 O 1.20825 * 119.99821 * 0.02562 * 17 16 15 19 19 C 1.50702 * 120.00152 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.47081 * 59.99751 * 19 17 16 21 21 C 1.53005 * 109.46741 * 299.99842 * 19 17 16 22 22 C 1.52999 * 109.47159 * 239.99525 * 21 19 17 23 23 C 1.52997 * 109.47317 * 300.00546 * 22 21 19 24 24 C 1.53000 * 109.47060 * 59.99960 * 23 22 21 25 25 C 1.52998 * 109.47058 * 179.97438 * 19 17 16 26 26 C 1.52999 * 109.47086 * 60.00158 * 25 19 17 27 27 C 1.52997 * 109.47446 * 59.99803 * 26 25 19 28 28 H 0.97001 * 119.99521 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.46763 * 59.99891 * 9 7 2 30 30 H 1.09004 * 109.47156 * 300.00548 * 9 7 2 31 31 H 1.09011 * 109.46795 * 60.00721 * 11 10 9 32 32 H 1.08998 * 109.47642 * 300.01263 * 11 10 9 33 33 H 1.08996 * 109.47012 * 305.00207 * 12 11 10 34 34 H 1.09011 * 109.47127 * 185.00702 * 12 11 10 35 35 H 1.09007 * 109.46899 * 59.99912 * 14 13 12 36 36 H 1.08991 * 109.47587 * 300.00425 * 14 13 12 37 37 H 1.09002 * 109.46994 * 305.00661 * 15 14 13 38 38 H 1.09003 * 109.47505 * 185.00656 * 15 14 13 39 39 H 1.09002 * 109.46935 * 120.00114 * 21 19 17 40 40 H 1.09000 * 109.47360 * 0.02562 * 21 19 17 41 41 H 1.08996 * 109.46929 * 179.97438 * 22 21 19 42 42 H 1.09002 * 109.47153 * 299.99641 * 23 22 21 43 43 H 1.09001 * 109.46832 * 179.97438 * 23 22 21 44 44 H 1.09000 * 109.47517 * 120.00106 * 24 23 22 45 45 H 1.09004 * 109.46796 * 240.00014 * 24 23 22 46 46 H 1.08993 * 109.46892 * 299.99669 * 25 19 17 47 47 H 1.09001 * 109.47218 * 179.97438 * 26 25 19 48 48 H 1.08994 * 109.47066 * 299.99818 * 26 25 19 49 49 H 1.09001 * 109.47375 * 120.00120 * 27 26 25 50 50 H 1.09000 * 109.47140 * 240.00137 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9879 -2.5413 0.0013 11 6 5.4124 -2.6542 0.0003 12 6 5.8068 -4.1325 0.0012 13 8 5.3787 -4.7405 -1.2191 14 6 5.7004 -6.1290 -1.3207 15 6 5.1970 -6.6725 -2.6594 16 8 5.9179 -6.0308 -3.7442 17 6 5.5929 -6.3986 -4.9935 18 8 4.7340 -7.2289 -5.1746 19 6 6.2991 -5.7760 -6.1702 20 1 7.3672 -5.9833 -6.1041 21 6 6.0716 -4.2630 -6.1592 22 6 5.3653 -3.8441 -7.4502 23 6 6.2340 -4.2206 -8.6521 24 6 6.4614 -5.7335 -8.6630 25 6 5.7449 -6.3662 -7.4683 26 6 4.2456 -6.0757 -7.5614 27 6 4.0176 -4.5628 -7.5508 28 1 -0.4849 0.8401 0.0004 29 1 3.8752 -0.6796 0.8895 30 1 3.8745 -0.6808 -0.8905 31 1 5.8158 -2.1696 0.8895 32 1 5.8145 -2.1717 -0.8905 33 1 5.3316 -4.6348 0.8437 34 1 6.8898 -4.2195 0.0901 35 1 5.2232 -6.6731 -0.5055 36 1 6.7810 -6.2572 -1.2594 37 1 4.1315 -6.4647 -2.7584 38 1 5.3624 -7.7492 -2.6999 39 1 7.0316 -3.7517 -6.0880 40 1 5.4531 -3.9947 -5.3027 41 1 5.2029 -2.7663 -7.4421 42 1 7.1941 -3.7093 -8.5808 43 1 5.7306 -3.9225 -9.5717 44 1 6.0663 -6.1537 -9.5878 45 1 7.5295 -5.9408 -8.5969 46 1 5.9073 -7.4439 -7.4758 47 1 3.8508 -6.4958 -8.4864 48 1 3.7348 -6.5260 -6.7103 49 1 3.5144 -4.2648 -8.4706 50 1 3.3985 -4.2947 -6.6947 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861319106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:40 Heat of formation + Delta-G solvation = -221.115058 kcal Electronic energy + Delta-G solvation = -28522.492894 eV Core-core repulsion = 24513.187235 eV Total energy + Delta-G solvation = -4009.305659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33871 -40.46898 -39.34747 -38.24446 -37.37729 -34.90752 -32.96937 -32.35910 -31.99353 -31.69865 -30.57065 -29.12911 -25.44612 -24.04964 -23.68747 -23.45365 -23.40759 -22.98809 -21.76380 -19.11316 -18.86150 -18.31666 -18.01401 -17.72434 -17.56958 -17.44356 -16.73737 -16.65787 -16.49638 -16.14955 -16.02728 -15.74895 -15.04009 -14.69959 -14.44999 -14.05896 -13.86900 -13.69153 -13.48273 -13.22342 -13.13608 -13.06787 -13.00037 -12.97508 -12.92365 -12.81045 -12.71389 -12.63578 -12.34669 -12.02695 -11.83731 -11.80390 -11.68109 -11.40154 -11.38618 -10.94935 -10.84309 -10.77163 -10.65495 -10.55284 -10.38053 -8.39313 -6.47961 1.14861 1.31821 1.35876 1.46760 1.64869 2.28322 2.64923 2.93065 3.07103 3.37880 3.56892 3.62623 3.83534 3.92394 4.04829 4.14033 4.16357 4.22669 4.24095 4.29445 4.31734 4.33818 4.36502 4.46251 4.47519 4.50652 4.52515 4.55700 4.59411 4.62585 4.67713 4.68843 4.82457 4.85900 4.98691 5.07423 5.10522 5.14887 5.26818 5.32222 5.34945 5.41204 5.43595 5.47558 5.49395 5.58816 5.90879 6.25618 6.56126 6.71493 6.74052 7.16716 8.78222 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011113 B = 0.002858 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.968648 B = 9793.825474 C =11263.699821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.241 1.241 7 C -0.549 4.549 8 H 0.025 0.975 9 C 0.179 3.821 10 O -0.407 6.407 11 C 0.046 3.954 12 C 0.070 3.930 13 O -0.409 6.409 14 C 0.061 3.939 15 C 0.065 3.935 16 O -0.354 6.354 17 C 0.459 3.541 18 O -0.533 6.533 19 C -0.070 4.070 20 H 0.135 0.865 21 C -0.105 4.105 22 C -0.089 4.089 23 C -0.110 4.110 24 C -0.106 4.106 25 C -0.066 4.066 26 C -0.129 4.129 27 C -0.121 4.121 28 H 0.274 0.726 29 H 0.018 0.982 30 H 0.008 0.992 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.484 -12.186 -15.181 29.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.165 1.165 7 C -0.587 4.587 8 H 0.043 0.957 9 C 0.104 3.896 10 O -0.327 6.327 11 C -0.031 4.031 12 C -0.006 4.006 13 O -0.329 6.329 14 C -0.015 4.015 15 C -0.008 4.008 16 O -0.271 6.271 17 C 0.304 3.696 18 O -0.423 6.423 19 C -0.089 4.089 20 H 0.152 0.848 21 C -0.142 4.142 22 C -0.107 4.107 23 C -0.147 4.147 24 C -0.144 4.144 25 C -0.085 4.085 26 C -0.166 4.166 27 C -0.158 4.158 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.026 0.974 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 21.841 -12.396 -15.325 29.420 hybrid contribution -0.754 0.423 0.616 1.062 sum 21.086 -11.972 -14.709 28.360 Atomic orbital electron populations 1.70047 1.08367 1.28870 1.50993 1.25912 0.95872 1.03622 0.93294 0.85557 0.79542 0.77089 0.79826 1.18487 1.19590 1.16453 1.21186 0.91153 0.93771 1.52601 0.95661 1.20318 0.93197 0.81002 0.95101 1.87920 1.21254 1.28261 1.95270 1.22787 0.82209 0.96791 1.01296 1.22650 0.99823 0.91587 0.86538 1.88039 1.81786 1.23672 1.39402 1.22712 1.01556 0.82505 0.94680 1.23228 0.95977 0.97678 0.83934 1.86547 1.60962 1.63881 1.15682 1.24479 0.81015 0.79261 0.84819 1.90584 1.32170 1.33301 1.86200 1.21267 1.01943 0.96701 0.88948 0.84757 1.21549 1.02449 0.92420 0.97815 1.21104 0.94727 0.99803 0.95108 1.21558 1.00014 0.96149 0.96982 1.21544 1.00934 0.95247 0.96639 1.20893 0.94965 0.99836 0.92757 1.21763 0.96616 0.95872 1.02347 1.21619 0.97307 0.95694 1.01203 0.91735 0.96404 0.97449 0.90131 0.93155 0.92362 0.88096 0.89311 0.89644 0.92910 0.87552 0.88403 0.93775 0.90575 0.90238 0.91188 0.90619 0.89872 0.90572 0.91123 0.92654 0.90889 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.91 13.96 21.45 0.30 -60.61 16 2 C 0.01 0.65 5.47 84.65 0.46 1.12 16 3 Si 0.96 44.10 27.47 68.60 1.88 45.98 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.24 -10.07 6.54 99.48 0.65 -9.41 16 7 C -0.55 -34.85 9.99 25.60 0.26 -34.60 16 8 H 0.02 1.81 8.06 -2.91 -0.02 1.79 16 9 C 0.18 9.36 4.76 71.23 0.34 9.69 16 10 O -0.41 -19.99 10.29 -144.35 -1.49 -21.47 16 11 C 0.05 1.57 6.32 71.98 0.45 2.02 16 12 C 0.07 1.92 6.32 71.98 0.45 2.37 16 13 O -0.41 -13.27 10.28 -136.02 -1.40 -14.66 16 14 C 0.06 1.39 6.33 71.98 0.46 1.84 16 15 C 0.07 1.64 5.84 71.98 0.42 2.07 16 16 O -0.35 -9.54 10.00 -48.74 -0.49 -10.03 16 17 C 0.46 11.94 6.69 71.24 0.48 12.42 16 18 O -0.53 -16.42 13.41 21.97 0.29 -16.12 16 19 C -0.07 -1.30 2.67 -11.54 -0.03 -1.33 16 20 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 21 C -0.10 -2.04 5.32 30.60 0.16 -1.88 16 22 C -0.09 -1.59 3.20 -10.77 -0.03 -1.63 16 23 C -0.11 -1.34 5.71 30.59 0.17 -1.17 16 24 C -0.11 -1.22 5.71 30.59 0.17 -1.05 16 25 C -0.07 -1.14 2.37 -10.79 -0.03 -1.16 16 26 C -0.13 -2.81 5.39 30.59 0.16 -2.64 16 27 C -0.12 -2.63 5.71 30.62 0.17 -2.45 16 28 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 29 H 0.02 0.88 7.20 -2.38 -0.02 0.87 16 30 H 0.01 0.39 7.57 -2.38 -0.02 0.37 16 31 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 32 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.10 1.86 8.14 -2.38 -0.02 1.85 16 35 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 1.61 8.13 -2.39 -0.02 1.60 16 38 H 0.11 2.11 8.13 -2.39 -0.02 2.09 16 39 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.04 1.15 7.49 -2.39 -0.02 1.14 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.08 1.33 8.10 -2.39 -0.02 1.31 16 47 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.05 1.57 5.52 -2.39 -0.01 1.56 16 49 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -81.11 392.72 4.02 -77.09 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.84 Total: 16.19 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.08 Total: -16.36 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.30 Total: -60.61 kcal Atomic # 8 Polarization: -59.21 SS G_CDS: -3.08 Total: -62.28 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.88 Total: 45.98 kcal Total: -81.11 4.02 -77.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.029 kcal (2) G-P(sol) polarization free energy of solvation -81.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds