Wall clock time and date at job start Tue Mar 31 2020 14:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00105 * 2 1 4 4 H 1.48498 * 109.47002 * 270.00038 * 3 2 1 5 5 H 1.48502 * 109.47278 * 30.00060 * 3 2 1 6 6 H 1.48500 * 109.47283 * 150.00110 * 3 2 1 7 7 C 1.37876 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99855 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99906 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47209 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.46997 * 65.00060 * 12 11 10 14 14 C 1.42893 * 113.99784 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46740 * 179.97438 * 14 13 12 16 16 O 1.45202 * 109.47692 * 64.99935 * 15 14 13 17 17 C 1.34222 * 117.00336 * 179.97438 * 16 15 14 18 18 O 1.20825 * 120.00301 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99905 * 179.97438 * 17 16 15 20 20 C 1.52951 * 109.41251 * 180.02562 * 19 17 16 21 21 C 1.53179 * 109.44734 * 176.90938 * 20 19 17 22 22 C 1.53147 * 108.88655 * 56.56620 * 21 20 19 23 23 C 1.52841 * 117.67569 * 91.49469 * 22 21 20 24 24 C 1.52806 * 117.74825 * 160.37823 * 22 21 20 25 25 C 1.53147 * 115.00654 * 306.06267 * 22 21 20 26 26 C 1.52934 * 109.41196 * 59.64853 * 19 17 16 27 27 H 0.97006 * 120.00018 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47701 * 59.99585 * 9 7 2 29 29 H 1.09000 * 109.47252 * 299.99324 * 9 7 2 30 30 H 1.09007 * 109.47112 * 59.99651 * 11 10 9 31 31 H 1.09008 * 109.47202 * 300.00045 * 11 10 9 32 32 H 1.08993 * 109.47187 * 304.99910 * 12 11 10 33 33 H 1.08994 * 109.46984 * 184.99808 * 12 11 10 34 34 H 1.09000 * 109.47580 * 60.00250 * 14 13 12 35 35 H 1.09001 * 109.47514 * 299.99517 * 14 13 12 36 36 H 1.09003 * 109.47310 * 304.99263 * 15 14 13 37 37 H 1.09009 * 109.47506 * 184.99996 * 15 14 13 38 38 H 1.09005 * 109.35412 * 299.82141 * 19 17 16 39 39 H 1.08998 * 109.47971 * 56.90627 * 20 19 17 40 40 H 1.09004 * 109.46635 * 296.89817 * 20 19 17 41 41 H 1.09001 * 109.56649 * 296.74231 * 21 20 19 42 42 H 1.08999 * 109.56825 * 176.39267 * 21 20 19 43 43 H 1.09002 * 117.50783 * 0.27023 * 23 22 21 44 44 H 1.09008 * 117.50386 * 215.22396 * 23 22 21 45 45 H 1.09001 * 117.50504 * 144.89350 * 24 22 21 46 46 H 1.09001 * 117.52712 * 359.83898 * 24 22 21 47 47 H 1.08996 * 109.57213 * 173.75440 * 25 22 21 48 48 H 1.08998 * 109.56916 * 294.11313 * 25 22 21 49 49 H 1.09005 * 109.47136 * 303.08157 * 26 19 17 50 50 H 1.08995 * 109.47675 * 63.09462 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9562 0.0004 13 8 3.3883 -5.8895 1.2210 14 6 4.4307 -6.8617 1.3223 15 6 5.1526 -6.6976 2.6612 16 8 4.2364 -7.0024 3.7457 17 6 4.7174 -6.9060 4.9951 18 8 5.8658 -6.5774 5.1767 19 6 3.8246 -7.2065 6.1715 20 6 4.6135 -7.0216 7.4687 21 6 3.6868 -7.2516 8.6664 22 6 3.0641 -8.6460 8.5508 23 6 3.7921 -9.8069 9.2279 24 6 2.4846 -9.2736 9.8178 25 6 2.3521 -8.9292 7.2249 26 6 3.3200 -8.6467 6.0717 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.9446 -4.9827 -0.8886 31 1 0.9452 -4.9822 0.8914 32 1 3.3209 -5.7958 -0.8419 33 1 2.1820 -6.9374 -0.0887 34 1 5.1406 -6.7196 0.5074 35 1 4.0020 -7.8619 1.2604 36 1 5.5048 -5.6709 2.7608 37 1 6.0027 -7.3787 2.7017 38 1 2.9751 -6.5235 6.1640 39 1 5.0149 -6.0090 7.5088 40 1 5.4335 -7.7391 7.5006 41 1 2.8985 -6.4987 8.6679 42 1 4.2607 -7.1834 9.5905 43 1 4.7150 -9.5797 9.7617 44 1 3.7621 -10.7774 8.7325 45 1 1.5944 -9.8934 9.7108 46 1 2.5472 -8.6961 10.7401 47 1 2.0412 -9.9734 7.1931 48 1 1.4786 -8.2835 7.1344 49 1 2.8042 -8.7860 5.1216 50 1 4.1649 -9.3328 6.1306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:47 Heat of formation + Delta-G solvation = -180.579495 kcal Electronic energy + Delta-G solvation = -27482.457143 eV Core-core repulsion = 23474.909238 eV Total energy + Delta-G solvation = -4007.547905 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86728 -39.41237 -38.06164 -36.73632 -36.12005 -35.11328 -32.73023 -31.37630 -31.03338 -29.10390 -28.31235 -26.72710 -23.79903 -23.22935 -22.77397 -22.39522 -22.16510 -21.89640 -20.55780 -19.03466 -17.80696 -17.11341 -16.75782 -16.38786 -16.06627 -16.03044 -15.71244 -15.35595 -14.91654 -14.56632 -14.37759 -14.16290 -14.04725 -13.88901 -13.52494 -13.33680 -12.86460 -12.74462 -12.68138 -12.33277 -12.26302 -12.03552 -11.87140 -11.69621 -11.60163 -11.42149 -11.16945 -11.11650 -10.81608 -10.75449 -10.73749 -10.55690 -10.52447 -10.46361 -10.24065 -9.97932 -9.92348 -9.47908 -9.06853 -8.80222 -8.14106 -6.08019 -4.09183 2.13954 2.55919 3.32572 3.37319 3.39889 3.43613 3.73504 4.15195 4.26687 4.37379 4.41906 4.50426 4.61355 4.67819 4.76668 4.81728 4.88921 4.93784 5.02263 5.04868 5.12430 5.20416 5.28403 5.29844 5.35609 5.39474 5.41482 5.46754 5.53724 5.54883 5.57120 5.59538 5.67469 5.72073 5.76283 5.80170 5.82811 6.02277 6.02598 6.03433 6.05076 6.24149 6.39225 7.12401 7.34606 7.46433 7.69432 7.82932 8.18519 8.61264 9.04301 9.55381 11.03612 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.002142 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.763818 B =13070.195947 C =13909.777355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.062 3.938 15 C 0.070 3.930 16 O -0.345 6.345 17 C 0.465 3.535 18 O -0.512 6.512 19 C -0.079 4.079 20 C -0.100 4.100 21 C -0.081 4.081 22 C -0.126 4.126 23 C -0.175 4.175 24 C -0.176 4.176 25 C -0.080 4.080 26 C -0.107 4.107 27 H 0.264 0.736 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.069 0.931 48 H 0.073 0.927 49 H 0.080 0.920 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.330 -23.485 15.071 28.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.015 4.015 15 C -0.004 4.004 16 O -0.261 6.261 17 C 0.308 3.692 18 O -0.400 6.400 19 C -0.098 4.098 20 C -0.138 4.138 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.212 4.212 24 C -0.213 4.213 25 C -0.117 4.117 26 C -0.145 4.145 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.087 0.913 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.690 -23.086 15.224 28.452 hybrid contribution 0.228 0.712 -0.328 0.816 sum 6.918 -22.374 14.897 27.756 Atomic orbital electron populations 1.69965 1.06083 1.27102 1.50728 1.24953 0.94994 0.99429 0.95213 0.86335 0.79712 0.82253 0.78188 1.20489 1.21068 1.19617 1.21061 0.94082 0.89363 1.50570 0.91561 1.20209 0.88792 0.83659 0.95346 1.87911 1.35190 1.12662 1.95164 1.22255 0.93701 0.85628 0.99854 1.22589 0.94050 0.97347 0.86821 1.88104 1.47009 1.54925 1.38621 1.22493 0.91249 0.93044 0.94726 1.23130 0.91013 1.02748 0.83503 1.86546 1.44526 1.79826 1.15209 1.23756 0.87481 0.73446 0.84471 1.90653 1.19520 1.43589 1.86260 1.21080 0.98323 1.00125 0.90237 1.21417 0.97682 1.03216 0.91470 1.21162 0.98438 0.94335 0.97874 1.21542 1.02919 0.94395 0.93695 1.23029 0.96133 0.98013 1.04013 1.22989 0.97357 1.03901 0.97004 1.21143 0.97454 1.01703 0.91387 1.21498 0.99769 0.93605 0.99590 0.92693 0.97778 0.97624 0.92968 0.93598 0.92712 0.92707 0.91074 0.92550 0.89922 0.89945 0.87072 0.90674 0.91006 0.90972 0.91231 0.88917 0.88939 0.88841 0.88854 0.91256 0.90811 0.90180 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.51 -15.54 9.43 -34.44 -0.32 -15.86 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.50 5.69 36.00 0.20 5.70 16 10 O -0.39 -9.85 10.29 -40.08 -0.41 -10.26 16 11 C 0.06 1.21 6.32 37.16 0.23 1.45 16 12 C 0.07 1.05 6.32 37.16 0.23 1.28 16 13 O -0.37 -6.22 10.28 -48.79 -0.50 -6.72 16 14 C 0.06 0.75 6.33 37.16 0.24 0.98 16 15 C 0.07 0.87 5.84 37.16 0.22 1.09 16 16 O -0.34 -4.64 10.02 -42.00 -0.42 -5.06 16 17 C 0.47 5.99 7.25 36.01 0.26 6.25 16 18 O -0.51 -7.79 15.70 -18.75 -0.29 -8.09 16 19 C -0.08 -0.76 2.54 -91.83 -0.23 -0.99 16 20 C -0.10 -0.89 4.52 -26.66 -0.12 -1.01 16 21 C -0.08 -0.58 5.67 -26.56 -0.15 -0.73 16 22 C -0.13 -0.85 1.97 -154.54 -0.31 -1.16 16 23 C -0.17 -1.10 9.93 -26.79 -0.27 -1.37 16 24 C -0.18 -1.07 9.99 -26.81 -0.27 -1.34 16 25 C -0.08 -0.54 5.67 -26.56 -0.15 -0.69 16 26 C -0.11 -0.84 5.16 -26.67 -0.14 -0.98 16 27 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 28 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.05 0.88 8.14 -51.92 -0.42 0.45 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 37 H 0.08 0.84 8.13 -51.92 -0.42 0.41 16 38 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.74 8.01 -51.93 -0.42 0.32 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 43 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.08 0.64 8.03 -51.93 -0.42 0.22 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 411.57 15.07 6.20 6.20 Total: -1.00 -34.87 411.57 -9.63 -44.50 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -9.25 Total: -5.40 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.67 Total: -5.85 kcal Atomic # 7 Polarization: -27.35 SS G_CDS: 0.74 Total: -26.61 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.63 Total: -30.13 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.87 -9.63 -44.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.080 kcal (2) G-P(sol) polarization free energy of solvation -34.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds