Wall clock time and date at job start Tue Mar 31 2020 14:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00105 * 2 1 4 4 H 1.48498 * 109.47002 * 270.00038 * 3 2 1 5 5 H 1.48502 * 109.47278 * 30.00060 * 3 2 1 6 6 H 1.48500 * 109.47283 * 150.00110 * 3 2 1 7 7 C 1.37876 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00127 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99855 * 0.02562 * 7 2 1 10 10 O 1.42905 * 109.47012 * 179.97438 * 9 7 2 11 11 C 1.42902 * 113.99906 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47209 * 179.97438 * 11 10 9 13 13 O 1.42904 * 109.46997 * 65.00060 * 12 11 10 14 14 C 1.42893 * 113.99784 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46740 * 179.97438 * 14 13 12 16 16 O 1.45202 * 109.47692 * 64.99935 * 15 14 13 17 17 C 1.34222 * 117.00336 * 179.97438 * 16 15 14 18 18 O 1.20825 * 120.00301 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99905 * 179.97438 * 17 16 15 20 20 C 1.52951 * 109.41251 * 180.02562 * 19 17 16 21 21 C 1.53179 * 109.44734 * 176.90938 * 20 19 17 22 22 C 1.53147 * 108.88655 * 56.56620 * 21 20 19 23 23 C 1.52841 * 117.67569 * 91.49469 * 22 21 20 24 24 C 1.52806 * 117.74825 * 160.37823 * 22 21 20 25 25 C 1.53147 * 115.00654 * 306.06267 * 22 21 20 26 26 C 1.52934 * 109.41196 * 59.64853 * 19 17 16 27 27 H 0.97006 * 120.00018 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47701 * 59.99585 * 9 7 2 29 29 H 1.09000 * 109.47252 * 299.99324 * 9 7 2 30 30 H 1.09007 * 109.47112 * 59.99651 * 11 10 9 31 31 H 1.09008 * 109.47202 * 300.00045 * 11 10 9 32 32 H 1.08993 * 109.47187 * 304.99910 * 12 11 10 33 33 H 1.08994 * 109.46984 * 184.99808 * 12 11 10 34 34 H 1.09000 * 109.47580 * 60.00250 * 14 13 12 35 35 H 1.09001 * 109.47514 * 299.99517 * 14 13 12 36 36 H 1.09003 * 109.47310 * 304.99263 * 15 14 13 37 37 H 1.09009 * 109.47506 * 184.99996 * 15 14 13 38 38 H 1.09005 * 109.35412 * 299.82141 * 19 17 16 39 39 H 1.08998 * 109.47971 * 56.90627 * 20 19 17 40 40 H 1.09004 * 109.46635 * 296.89817 * 20 19 17 41 41 H 1.09001 * 109.56649 * 296.74231 * 21 20 19 42 42 H 1.08999 * 109.56825 * 176.39267 * 21 20 19 43 43 H 1.09002 * 117.50783 * 0.27023 * 23 22 21 44 44 H 1.09008 * 117.50386 * 215.22396 * 23 22 21 45 45 H 1.09001 * 117.50504 * 144.89350 * 24 22 21 46 46 H 1.09001 * 117.52712 * 359.83898 * 24 22 21 47 47 H 1.08996 * 109.57213 * 173.75440 * 25 22 21 48 48 H 1.08998 * 109.56916 * 294.11313 * 25 22 21 49 49 H 1.09005 * 109.47136 * 303.08157 * 26 19 17 50 50 H 1.08995 * 109.47675 * 63.09462 * 26 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0011 12 6 2.6481 -5.9562 0.0004 13 8 3.3883 -5.8895 1.2210 14 6 4.4307 -6.8617 1.3223 15 6 5.1526 -6.6976 2.6612 16 8 4.2364 -7.0024 3.7457 17 6 4.7174 -6.9060 4.9951 18 8 5.8658 -6.5774 5.1767 19 6 3.8246 -7.2065 6.1715 20 6 4.6135 -7.0216 7.4687 21 6 3.6868 -7.2516 8.6664 22 6 3.0641 -8.6460 8.5508 23 6 3.7921 -9.8069 9.2279 24 6 2.4846 -9.2736 9.8178 25 6 2.3521 -8.9292 7.2249 26 6 3.3200 -8.6467 6.0717 27 1 -0.4850 0.8401 0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 0.9446 -4.9827 -0.8886 31 1 0.9452 -4.9822 0.8914 32 1 3.3209 -5.7958 -0.8419 33 1 2.1820 -6.9374 -0.0887 34 1 5.1406 -6.7196 0.5074 35 1 4.0020 -7.8619 1.2604 36 1 5.5048 -5.6709 2.7608 37 1 6.0027 -7.3787 2.7017 38 1 2.9751 -6.5235 6.1640 39 1 5.0149 -6.0090 7.5088 40 1 5.4335 -7.7391 7.5006 41 1 2.8985 -6.4987 8.6679 42 1 4.2607 -7.1834 9.5905 43 1 4.7150 -9.5797 9.7617 44 1 3.7621 -10.7774 8.7325 45 1 1.5944 -9.8934 9.7108 46 1 2.5472 -8.6961 10.7401 47 1 2.0412 -9.9734 7.1931 48 1 1.4786 -8.2835 7.1344 49 1 2.8042 -8.7860 5.1216 50 1 4.1649 -9.3328 6.1306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861319174.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:46 Heat of formation + Delta-G solvation = -200.293334 kcal Electronic energy + Delta-G solvation = -27483.311999 eV Core-core repulsion = 23474.909238 eV Total energy + Delta-G solvation = -4008.402761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.82051 -40.08218 -39.33593 -38.23104 -37.44912 -35.81209 -34.95328 -32.32950 -31.90180 -30.47674 -29.18334 -28.69668 -24.64859 -24.55764 -23.84237 -23.41197 -23.37652 -22.94253 -21.40635 -19.64168 -18.79820 -18.67734 -18.22305 -17.73097 -17.57832 -17.16665 -16.65843 -16.22961 -16.20295 -16.03892 -15.82318 -15.69175 -14.85110 -14.75795 -14.51655 -14.37000 -14.17397 -13.71978 -13.57482 -13.37626 -13.29412 -13.18541 -13.01789 -12.86756 -12.75663 -12.68089 -12.42317 -12.34005 -12.22712 -12.01669 -11.91298 -11.82917 -11.62813 -11.48524 -11.30878 -11.14756 -10.89786 -10.82589 -10.57224 -10.45953 -10.25078 -8.33860 -6.46176 1.12095 1.38059 1.41274 1.53407 1.63400 2.33457 2.65324 2.89290 2.99468 3.19050 3.48006 3.60500 3.71312 3.85966 3.92458 4.02251 4.06467 4.11440 4.14158 4.18359 4.23272 4.29911 4.33237 4.34035 4.49403 4.50111 4.58618 4.62048 4.68963 4.76647 4.81546 4.84723 4.87886 4.88949 4.91454 4.97093 5.07399 5.10052 5.16292 5.17182 5.22409 5.33170 5.36851 5.42894 5.46058 5.52880 5.94344 6.25640 6.52587 6.67344 6.80799 7.25592 8.78508 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.002142 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.763818 B =13070.195947 C =13909.777355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.049 3.951 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.061 3.939 15 C 0.065 3.935 16 O -0.353 6.353 17 C 0.462 3.538 18 O -0.541 6.541 19 C -0.077 4.077 20 C -0.096 4.096 21 C -0.077 4.077 22 C -0.135 4.135 23 C -0.176 4.176 24 C -0.170 4.170 25 C -0.076 4.076 26 C -0.100 4.100 27 H 0.272 0.728 28 H -0.008 1.008 29 H -0.017 1.017 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 -24.410 15.197 29.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.329 6.329 14 C -0.015 4.015 15 C -0.009 4.009 16 O -0.269 6.269 17 C 0.307 3.693 18 O -0.432 6.432 19 C -0.096 4.096 20 C -0.133 4.133 21 C -0.114 4.114 22 C -0.135 4.135 23 C -0.213 4.213 24 C -0.207 4.207 25 C -0.113 4.113 26 C -0.138 4.138 27 H 0.080 0.920 28 H 0.009 0.991 29 H 0.001 0.999 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.115 0.885 47 H 0.100 0.900 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.871 -24.047 15.343 29.340 hybrid contribution 0.155 0.912 -0.364 0.994 sum 7.027 -23.135 14.979 28.442 Atomic orbital electron populations 1.70063 1.07666 1.28695 1.50385 1.25972 0.96038 1.03379 0.93881 0.85182 0.78253 0.76988 0.78976 1.18956 1.19685 1.19246 1.21380 0.93996 0.91003 1.52394 0.92343 1.19837 0.88622 0.84699 0.93536 1.87860 1.35418 1.14371 1.95223 1.22689 0.95675 0.83930 1.00504 1.22597 0.93332 0.97545 0.86655 1.88040 1.48496 1.57003 1.39315 1.22731 0.90728 0.93263 0.94801 1.23267 0.91868 1.01979 0.83781 1.86554 1.45022 1.79693 1.15663 1.24433 0.87510 0.72444 0.84909 1.90631 1.20916 1.45036 1.86568 1.21211 0.97797 1.01502 0.89072 1.21368 0.97849 1.02146 0.91965 1.21129 0.98155 0.94919 0.97190 1.21540 1.03607 0.94196 0.94194 1.23084 0.96317 0.97967 1.03883 1.23045 0.97502 1.03585 0.96597 1.21132 0.97009 1.02455 0.90734 1.21465 1.00027 0.92077 1.00220 0.91953 0.99065 0.99912 0.91100 0.94123 0.91957 0.88362 0.89009 0.89831 0.92412 0.87545 0.86812 0.92151 0.91563 0.90875 0.90529 0.88891 0.88413 0.88148 0.88501 0.90026 0.90779 0.90191 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 2 C 0.01 0.35 5.46 84.65 0.46 0.81 16 3 Si 0.98 45.56 29.54 68.60 2.03 47.58 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -34.06 9.43 25.60 0.24 -33.82 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.17 5.69 71.23 0.41 12.58 16 10 O -0.41 -21.12 10.29 -144.34 -1.49 -22.61 16 11 C 0.05 1.86 6.32 71.98 0.45 2.32 16 12 C 0.07 2.16 6.32 71.98 0.45 2.61 16 13 O -0.41 -13.47 10.28 -136.02 -1.40 -14.86 16 14 C 0.06 1.36 6.33 71.98 0.46 1.81 16 15 C 0.06 1.59 5.84 71.98 0.42 2.01 16 16 O -0.35 -9.48 10.02 -48.69 -0.49 -9.96 16 17 C 0.46 12.09 7.25 71.24 0.52 12.61 16 18 O -0.54 -16.96 15.70 21.97 0.34 -16.61 16 19 C -0.08 -1.48 2.54 -11.58 -0.03 -1.51 16 20 C -0.10 -1.72 4.52 30.64 0.14 -1.58 16 21 C -0.08 -1.05 5.67 30.70 0.17 -0.88 16 22 C -0.14 -1.66 1.97 -52.20 -0.10 -1.76 16 23 C -0.18 -1.93 9.93 30.55 0.30 -1.63 16 24 C -0.17 -1.78 9.99 30.54 0.31 -1.47 16 25 C -0.08 -0.91 5.67 30.70 0.17 -0.74 16 26 C -0.10 -1.48 5.16 30.63 0.16 -1.32 16 27 H 0.27 15.32 8.31 -92.70 -0.77 14.55 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 30 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 37 H 0.11 2.06 8.13 -2.38 -0.02 2.04 16 38 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.06 1.24 8.01 -2.39 -0.02 1.22 16 40 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.94 8.09 -2.39 -0.02 0.92 16 43 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.10 0.91 8.14 -2.39 -0.02 0.90 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.08 0.80 8.09 -2.39 -0.02 0.78 16 48 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.08 1.19 8.03 -2.38 -0.02 1.17 16 50 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -76.39 411.57 4.70 -71.69 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.88 Total: 11.30 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 4.53 Total: -9.96 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.28 Total: -56.56 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -3.03 Total: -64.05 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -76.39 4.70 -71.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319174.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.607 kcal (2) G-P(sol) polarization free energy of solvation -76.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds