Wall clock time and date at job start Tue Mar 31 2020 14:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.62865 * 2 1 4 4 C 1.53005 * 109.63455 * 120.38970 * 2 1 3 5 5 C 1.50091 * 110.13653 * 169.46641 * 4 2 1 6 6 C 1.31651 * 123.77998 * 342.83527 * 5 4 2 7 7 C 1.46955 * 118.10885 * 180.43828 * 6 5 4 8 8 O 1.21532 * 120.00221 * 0.02562 * 7 6 5 9 9 O 1.34795 * 119.99596 * 180.02562 * 7 6 5 10 10 C 1.45197 * 116.99776 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47394 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46685 * 64.99580 * 11 10 9 13 13 C 1.42903 * 113.99957 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47187 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.46736 * 65.00644 * 14 13 12 16 16 C 1.42905 * 114.00219 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47375 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99648 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99941 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99558 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47479 * 90.00513 * 21 19 17 23 23 H 1.48499 * 109.47358 * 210.00296 * 21 19 17 24 24 H 1.48503 * 109.47268 * 330.00025 * 21 19 17 25 25 C 1.50092 * 123.77598 * 0.41563 * 6 5 4 26 26 C 1.53002 * 110.13572 * 342.82742 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.60726 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.60917 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.60898 * 1 2 3 30 30 H 1.08996 * 109.47000 * 59.99935 * 3 2 1 31 31 H 1.08998 * 109.47149 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47195 * 300.00319 * 3 2 1 33 33 H 1.09000 * 109.36174 * 289.67703 * 4 2 1 34 34 H 1.09005 * 109.35375 * 49.40171 * 4 2 1 35 35 H 1.08002 * 118.10982 * 162.84921 * 5 4 2 36 36 H 1.09005 * 109.47289 * 299.99900 * 10 9 7 37 37 H 1.09002 * 109.47545 * 60.00130 * 10 9 7 38 38 H 1.08998 * 109.47333 * 184.99524 * 11 10 9 39 39 H 1.08998 * 109.47296 * 305.00176 * 11 10 9 40 40 H 1.08999 * 109.47637 * 300.00635 * 13 12 11 41 41 H 1.09005 * 109.46413 * 60.00451 * 13 12 11 42 42 H 1.09001 * 109.47361 * 184.99898 * 14 13 12 43 43 H 1.08998 * 109.47909 * 305.01076 * 14 13 12 44 44 H 1.09000 * 109.46995 * 299.99850 * 16 15 14 45 45 H 1.08996 * 109.47043 * 59.99671 * 16 15 14 46 46 H 0.97010 * 119.99468 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.35904 * 103.03402 * 25 6 5 48 48 H 1.09002 * 109.35981 * 222.76210 * 25 6 5 49 49 H 1.08996 * 109.63337 * 290.05879 * 26 25 6 50 50 H 1.09006 * 109.62831 * 169.46733 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 2.0441 -0.7290 1.2431 5 6 3.5226 -0.9619 1.1310 6 6 4.1915 -0.8883 -0.0005 7 6 5.6372 -1.1497 0.0315 8 8 6.1819 -1.4250 1.0826 9 8 6.3593 -1.0842 -1.1048 10 6 7.7819 -1.3547 -0.9984 11 6 8.4287 -1.2347 -2.3798 12 8 8.3337 0.1168 -2.8343 13 6 8.9116 0.3387 -4.1223 14 6 8.7527 1.8114 -4.5057 15 8 9.5114 2.6222 -3.6062 16 6 9.4316 4.0229 -3.8780 17 6 10.2651 4.7776 -2.8747 18 1 10.8017 4.2413 -2.1060 19 6 10.3417 6.1528 -2.9374 20 7 11.0687 6.8115 -2.0615 21 14 9.4131 7.0803 -4.2665 22 1 8.0563 7.4268 -3.7725 23 1 10.1483 8.3247 -4.6076 24 1 9.2965 6.2270 -5.4763 25 6 3.5624 -0.5533 -1.3215 26 6 2.0452 -0.7351 -1.2435 27 1 -0.3633 0.5077 0.8935 28 1 -0.3633 -1.0277 -0.0070 29 1 -0.3634 0.5199 -0.8865 30 1 1.6820 1.9559 0.8899 31 1 3.1339 1.4382 -0.0005 32 1 1.6820 1.9560 -0.8900 33 1 1.8394 -0.1248 2.1269 34 1 1.5351 -1.6885 1.3355 35 1 4.0692 -1.2041 2.0304 36 1 8.2388 -0.6350 -0.3191 37 1 7.9321 -2.3635 -0.6137 38 1 9.4777 -1.5238 -2.3162 39 1 7.9128 -1.8908 -3.0808 40 1 9.9707 0.0823 -4.0946 41 1 8.4060 -0.2849 -4.8597 42 1 9.1130 1.9629 -5.5232 43 1 7.7007 2.0907 -4.4472 44 1 9.8062 4.2199 -4.8825 45 1 8.3938 4.3482 -3.8070 46 1 11.1229 7.7790 -2.1058 47 1 3.7897 0.4815 -1.5778 48 1 3.9643 -1.2128 -2.0907 49 1 1.8070 -1.7959 -1.1667 50 1 1.5799 -0.3159 -2.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861320120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:04 Heat of formation + Delta-G solvation = -183.774896 kcal Electronic energy + Delta-G solvation = -27794.307265 eV Core-core repulsion = 23786.620796 eV Total energy + Delta-G solvation = -4007.686468 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78794 -39.42076 -38.10304 -36.77204 -36.19493 -33.78152 -32.65760 -31.32727 -30.99679 -29.15852 -27.71030 -27.54286 -27.25863 -23.79848 -23.33344 -22.19278 -22.03685 -21.77494 -20.17348 -18.25651 -17.33093 -17.06373 -16.86486 -16.82106 -16.09358 -16.03527 -15.25853 -14.95693 -14.88687 -14.69812 -14.49757 -14.29514 -14.17513 -13.86190 -13.54426 -13.15353 -13.04156 -12.72873 -12.64627 -12.43283 -12.29337 -12.17275 -12.01865 -11.95865 -11.82734 -11.78525 -11.26782 -11.01428 -10.96697 -10.84009 -10.77007 -10.70354 -10.51470 -10.41577 -10.37191 -9.85758 -9.51141 -9.38243 -9.14920 -8.83165 -8.44493 -6.08631 -4.07339 0.99150 2.59033 2.82656 3.26796 3.33206 3.34603 3.69611 4.19525 4.27258 4.37846 4.42012 4.62890 4.64222 4.75409 4.82836 4.87841 5.01298 5.02911 5.12301 5.18642 5.22582 5.23978 5.29471 5.34064 5.37071 5.38974 5.44268 5.50073 5.54540 5.59826 5.62009 5.66654 5.72061 5.82259 5.84729 5.89350 5.89817 5.91538 6.10399 6.11842 6.16682 6.28975 6.39702 6.62100 7.02422 7.30023 7.62403 7.68284 8.04414 8.69735 9.03487 9.50604 11.04535 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002595 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.883193 B =10787.013139 C =12209.105345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.070 4.070 3 C -0.148 4.148 4 C -0.086 4.086 5 C -0.062 4.062 6 C -0.149 4.149 7 C 0.498 3.502 8 O -0.517 6.517 9 O -0.340 6.340 10 C 0.070 3.930 11 C 0.063 3.937 12 O -0.367 6.367 13 C 0.068 3.932 14 C 0.059 3.941 15 O -0.374 6.374 16 C 0.168 3.832 17 C -0.517 4.517 18 H 0.082 0.918 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.266 1.266 25 C -0.079 4.079 26 C -0.108 4.108 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.047 0.953 44 H 0.002 0.998 45 H -0.001 1.001 46 H 0.266 0.734 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.065 0.935 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 -20.492 0.675 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.205 4.205 4 C -0.122 4.122 5 C -0.081 4.081 6 C -0.150 4.150 7 C 0.344 3.656 8 O -0.408 6.408 9 O -0.256 6.256 10 C -0.004 4.004 11 C -0.014 4.014 12 O -0.286 6.286 13 C -0.008 4.008 14 C -0.018 4.018 15 O -0.293 6.293 16 C 0.093 3.907 17 C -0.555 4.555 18 H 0.100 0.900 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.191 1.191 25 C -0.116 4.116 26 C -0.146 4.146 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.020 0.980 45 H 0.017 0.983 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.084 0.916 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.551 -20.306 1.273 28.919 hybrid contribution -0.161 0.487 -0.889 1.026 sum -20.712 -19.819 0.385 28.669 Atomic orbital electron populations 1.21852 0.94097 1.01749 1.02074 1.20662 0.95523 0.95924 0.94848 1.21978 1.02013 0.94608 1.01943 1.20714 0.91397 1.01254 0.98851 1.22986 0.96486 0.91344 0.97283 1.20099 0.89345 1.07923 0.97661 1.21567 0.88843 0.73517 0.81674 1.90839 1.72774 1.45361 1.31795 1.86628 1.22470 1.81165 1.35371 1.23138 0.77202 1.01987 0.98042 1.22501 0.99217 0.85716 0.94006 1.88105 1.80202 1.25568 1.34770 1.22559 0.97715 0.95985 0.84556 1.22335 0.96377 0.89779 0.93352 1.87975 1.69177 1.18851 1.53296 1.20605 0.95815 0.77800 0.96463 1.20898 1.29097 0.91270 1.14273 0.89971 1.24775 0.95239 0.97075 0.95958 1.69884 1.39971 1.07974 1.35628 0.86837 0.80382 0.79764 0.82682 1.19900 1.20806 1.19114 1.20371 0.94650 1.03154 0.93400 1.21701 0.94867 1.00382 0.97644 0.92508 0.92633 0.92337 0.92617 0.91778 0.92307 0.89689 0.89486 0.85710 0.89806 0.89859 0.90938 0.92519 0.92532 0.92579 0.92828 0.93450 0.98015 0.98330 0.92395 0.89615 0.90083 0.91621 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.48 37.16 0.32 -0.45 16 2 C -0.07 -0.47 0.78 -154.31 -0.12 -0.59 16 3 C -0.15 -1.20 7.81 37.16 0.29 -0.91 16 4 C -0.09 -0.57 4.87 -28.17 -0.14 -0.71 16 5 C -0.06 -0.58 9.01 -36.47 -0.33 -0.91 16 6 C -0.15 -1.62 5.12 -103.26 -0.53 -2.15 16 7 C 0.50 6.88 7.84 34.26 0.27 7.15 16 8 O -0.52 -8.27 15.75 -19.29 -0.30 -8.57 16 9 O -0.34 -4.74 9.51 -43.54 -0.41 -5.15 16 10 C 0.07 0.89 5.86 37.16 0.22 1.11 16 11 C 0.06 0.75 6.33 37.16 0.24 0.99 16 12 O -0.37 -6.11 10.28 -48.79 -0.50 -6.61 16 13 C 0.07 1.01 6.32 37.16 0.23 1.24 16 14 C 0.06 1.07 6.32 37.16 0.23 1.30 16 15 O -0.37 -9.12 10.29 -40.08 -0.41 -9.54 16 16 C 0.17 4.42 4.76 36.01 0.17 4.59 16 17 C -0.52 -15.86 9.99 -34.44 -0.34 -16.20 16 18 H 0.08 2.76 8.06 -52.48 -0.42 2.34 16 19 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 20 N -0.90 -28.18 13.96 55.43 0.77 -27.41 16 21 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 25 C -0.08 -0.73 4.81 -28.18 -0.14 -0.87 16 26 C -0.11 -0.77 4.94 -26.54 -0.13 -0.90 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.63 5.69 -51.93 -0.30 0.33 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.09 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.13 1.24 7.17 -52.49 -0.38 0.87 16 36 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.00 0.06 7.20 -51.93 -0.37 -0.32 16 45 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 46 H 0.27 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.09 0.87 6.92 -51.93 -0.36 0.52 16 48 H 0.08 0.75 7.93 -51.93 -0.41 0.34 16 49 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 403.87 15.07 6.09 6.09 Total: -1.00 -35.72 403.87 -8.28 -43.99 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -8.98 Total: -4.61 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: 0.14 Total: -5.27 kcal Atomic # 7 Polarization: -28.18 SS G_CDS: 0.77 Total: -27.41 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -1.63 Total: -29.86 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.72 -8.28 -43.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861320120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.781 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds