Wall clock time and date at job start Tue Mar 31 2020 14:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.62865 * 2 1 4 4 C 1.53005 * 109.63455 * 120.38970 * 2 1 3 5 5 C 1.50091 * 110.13653 * 169.46641 * 4 2 1 6 6 C 1.31651 * 123.77998 * 342.83527 * 5 4 2 7 7 C 1.46955 * 118.10885 * 180.43828 * 6 5 4 8 8 O 1.21532 * 120.00221 * 0.02562 * 7 6 5 9 9 O 1.34795 * 119.99596 * 180.02562 * 7 6 5 10 10 C 1.45197 * 116.99776 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.47394 * 179.97438 * 10 9 7 12 12 O 1.42903 * 109.46685 * 64.99580 * 11 10 9 13 13 C 1.42903 * 113.99957 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47187 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.46736 * 65.00644 * 14 13 12 16 16 C 1.42905 * 114.00219 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47375 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99648 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99941 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99558 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 119.99952 * 359.97438 * 19 17 16 22 22 H 1.48497 * 109.47479 * 90.00513 * 21 19 17 23 23 H 1.48499 * 109.47358 * 210.00296 * 21 19 17 24 24 H 1.48503 * 109.47268 * 330.00025 * 21 19 17 25 25 C 1.50092 * 123.77598 * 0.41563 * 6 5 4 26 26 C 1.53002 * 110.13572 * 342.82742 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.60726 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.60917 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.60898 * 1 2 3 30 30 H 1.08996 * 109.47000 * 59.99935 * 3 2 1 31 31 H 1.08998 * 109.47149 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47195 * 300.00319 * 3 2 1 33 33 H 1.09000 * 109.36174 * 289.67703 * 4 2 1 34 34 H 1.09005 * 109.35375 * 49.40171 * 4 2 1 35 35 H 1.08002 * 118.10982 * 162.84921 * 5 4 2 36 36 H 1.09005 * 109.47289 * 299.99900 * 10 9 7 37 37 H 1.09002 * 109.47545 * 60.00130 * 10 9 7 38 38 H 1.08998 * 109.47333 * 184.99524 * 11 10 9 39 39 H 1.08998 * 109.47296 * 305.00176 * 11 10 9 40 40 H 1.08999 * 109.47637 * 300.00635 * 13 12 11 41 41 H 1.09005 * 109.46413 * 60.00451 * 13 12 11 42 42 H 1.09001 * 109.47361 * 184.99898 * 14 13 12 43 43 H 1.08998 * 109.47909 * 305.01076 * 14 13 12 44 44 H 1.09000 * 109.46995 * 299.99850 * 16 15 14 45 45 H 1.08996 * 109.47043 * 59.99671 * 16 15 14 46 46 H 0.97010 * 119.99468 * 179.97438 * 20 19 17 47 47 H 1.09007 * 109.35904 * 103.03402 * 25 6 5 48 48 H 1.09002 * 109.35981 * 222.76210 * 25 6 5 49 49 H 1.08996 * 109.63337 * 290.05879 * 26 25 6 50 50 H 1.09006 * 109.62831 * 169.46733 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0440 1.4411 0.0000 4 6 2.0441 -0.7290 1.2431 5 6 3.5226 -0.9619 1.1310 6 6 4.1915 -0.8883 -0.0005 7 6 5.6372 -1.1497 0.0315 8 8 6.1819 -1.4250 1.0826 9 8 6.3593 -1.0842 -1.1048 10 6 7.7819 -1.3547 -0.9984 11 6 8.4287 -1.2347 -2.3798 12 8 8.3337 0.1168 -2.8343 13 6 8.9116 0.3387 -4.1223 14 6 8.7527 1.8114 -4.5057 15 8 9.5114 2.6222 -3.6062 16 6 9.4316 4.0229 -3.8780 17 6 10.2651 4.7776 -2.8747 18 1 10.8017 4.2413 -2.1060 19 6 10.3417 6.1528 -2.9374 20 7 11.0687 6.8115 -2.0615 21 14 9.4131 7.0803 -4.2665 22 1 8.0563 7.4268 -3.7725 23 1 10.1483 8.3247 -4.6076 24 1 9.2965 6.2270 -5.4763 25 6 3.5624 -0.5533 -1.3215 26 6 2.0452 -0.7351 -1.2435 27 1 -0.3633 0.5077 0.8935 28 1 -0.3633 -1.0277 -0.0070 29 1 -0.3634 0.5199 -0.8865 30 1 1.6820 1.9559 0.8899 31 1 3.1339 1.4382 -0.0005 32 1 1.6820 1.9560 -0.8900 33 1 1.8394 -0.1248 2.1269 34 1 1.5351 -1.6885 1.3355 35 1 4.0692 -1.2041 2.0304 36 1 8.2388 -0.6350 -0.3191 37 1 7.9321 -2.3635 -0.6137 38 1 9.4777 -1.5238 -2.3162 39 1 7.9128 -1.8908 -3.0808 40 1 9.9707 0.0823 -4.0946 41 1 8.4060 -0.2849 -4.8597 42 1 9.1130 1.9629 -5.5232 43 1 7.7007 2.0907 -4.4472 44 1 9.8062 4.2199 -4.8825 45 1 8.3938 4.3482 -3.8070 46 1 11.1229 7.7790 -2.1058 47 1 3.7897 0.4815 -1.5778 48 1 3.9643 -1.2128 -2.0907 49 1 1.8070 -1.7959 -1.1667 50 1 1.5799 -0.3159 -2.1357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861320120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:51:03 Heat of formation + Delta-G solvation = -206.067765 kcal Electronic energy + Delta-G solvation = -27795.273956 eV Core-core repulsion = 23786.620796 eV Total energy + Delta-G solvation = -4008.653160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75710 -40.17073 -39.36122 -38.27745 -37.44166 -34.90730 -34.50610 -32.36736 -31.83832 -30.67915 -29.18777 -28.34103 -28.05075 -24.64455 -24.05214 -24.04692 -23.40706 -23.01733 -20.90998 -19.17873 -19.08797 -18.37113 -18.08129 -17.69875 -17.56955 -17.19906 -16.64781 -16.19267 -16.11635 -15.88080 -15.68122 -15.27518 -14.95451 -14.78734 -14.68841 -14.46046 -14.30265 -13.82372 -13.75411 -13.50359 -13.35779 -13.17506 -12.99400 -12.82174 -12.72337 -12.66629 -12.59542 -12.46671 -12.33026 -12.04192 -11.84060 -11.79789 -11.69494 -11.40881 -11.38620 -11.17822 -11.10376 -10.94886 -10.58731 -10.37927 -10.15477 -8.39253 -6.47786 0.09490 1.31871 1.35976 1.46844 1.62429 1.85146 2.28431 2.64537 2.93122 3.07273 3.46329 3.59911 3.83094 3.87801 3.94337 4.03515 4.09780 4.16183 4.18884 4.23230 4.32267 4.43128 4.46216 4.49832 4.52527 4.58100 4.61787 4.64410 4.68911 4.71354 4.82503 4.87815 4.92055 4.96529 4.98857 5.01125 5.08510 5.09672 5.25490 5.26963 5.30358 5.37419 5.41298 5.52381 5.54579 5.62576 5.90989 6.25333 6.56227 6.62174 6.74104 7.16786 8.78295 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.010330 B = 0.002595 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2709.883193 B =10787.013139 C =12209.105345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.085 4.085 5 C -0.044 4.044 6 C -0.171 4.171 7 C 0.491 3.509 8 O -0.550 6.550 9 O -0.347 6.347 10 C 0.065 3.935 11 C 0.062 3.938 12 O -0.409 6.409 13 C 0.070 3.930 14 C 0.046 3.954 15 O -0.407 6.407 16 C 0.179 3.821 17 C -0.549 4.549 18 H 0.025 0.975 19 C 0.010 3.990 20 N -0.944 5.944 21 Si 0.960 3.040 22 H -0.261 1.261 23 H -0.271 1.271 24 H -0.241 1.241 25 C -0.074 4.074 26 C -0.104 4.104 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.055 0.945 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.050 0.950 44 H 0.019 0.981 45 H 0.008 0.992 46 H 0.274 0.726 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.077 0.923 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.711 -21.287 -1.637 31.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.207 4.207 4 C -0.121 4.121 5 C -0.062 4.062 6 C -0.172 4.172 7 C 0.340 3.660 8 O -0.443 6.443 9 O -0.263 6.263 10 C -0.009 4.009 11 C -0.014 4.014 12 O -0.329 6.329 13 C -0.006 4.006 14 C -0.031 4.031 15 O -0.327 6.327 16 C 0.104 3.896 17 C -0.587 4.587 18 H 0.043 0.957 19 C -0.188 4.188 20 N -0.583 5.583 21 Si 0.780 3.220 22 H -0.185 1.185 23 H -0.196 1.196 24 H -0.165 1.165 25 C -0.111 4.111 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.077 0.923 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.036 0.964 45 H 0.025 0.975 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -23.413 -21.134 -1.051 31.558 hybrid contribution 0.792 0.652 -0.036 1.026 sum -22.621 -20.482 -1.087 30.535 Atomic orbital electron populations 1.21812 0.92499 1.02635 1.02400 1.20657 0.96656 0.94768 0.94650 1.21990 1.00511 0.95948 1.02246 1.20841 0.89232 1.02628 0.99370 1.23244 0.98039 0.88750 0.96212 1.20199 0.87816 1.10117 0.99107 1.22224 0.90003 0.72637 0.81178 1.90808 1.73600 1.47227 1.32672 1.86631 1.22984 1.81156 1.35558 1.23279 0.76725 1.02410 0.98470 1.22711 1.00621 0.84256 0.93767 1.88045 1.80676 1.28297 1.35911 1.22653 0.98514 0.94351 0.85079 1.22788 0.95839 0.90732 0.93731 1.87924 1.70730 1.18258 1.55771 1.20322 0.95084 0.78822 0.95418 1.21185 1.30310 0.92427 1.14742 0.95656 1.25919 0.95998 0.97880 0.98959 1.70047 1.41473 1.08830 1.37931 0.85548 0.78832 0.78270 0.79313 1.18521 1.19577 1.16455 1.20322 0.96334 1.02014 0.92381 1.21702 0.92926 1.01235 0.98249 0.92040 0.91448 0.92242 0.92177 0.94091 0.92190 0.88456 0.87141 0.86700 0.92628 0.87544 0.89065 0.89659 0.92275 0.88116 0.90103 0.93194 0.96375 0.97474 0.91735 0.91225 0.90332 0.90444 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.48 71.98 0.61 -0.50 16 2 C -0.07 -0.79 0.78 -52.05 -0.04 -0.83 16 3 C -0.15 -2.32 7.81 71.98 0.56 -1.75 16 4 C -0.08 -0.95 4.87 29.66 0.14 -0.81 16 5 C -0.04 -0.80 9.01 24.85 0.22 -0.58 16 6 C -0.17 -3.79 5.12 -18.42 -0.09 -3.89 16 7 C 0.49 14.22 7.84 70.11 0.55 14.77 16 8 O -0.55 -18.54 15.75 19.73 0.31 -18.23 16 9 O -0.35 -9.98 9.51 -54.40 -0.52 -10.50 16 10 C 0.06 1.69 5.86 71.98 0.42 2.11 16 11 C 0.06 1.44 6.33 71.98 0.46 1.89 16 12 O -0.41 -13.45 10.28 -136.02 -1.40 -14.85 16 13 C 0.07 1.93 6.32 71.98 0.45 2.39 16 14 C 0.05 1.58 6.32 71.98 0.45 2.03 16 15 O -0.41 -20.07 10.29 -144.34 -1.49 -21.55 16 16 C 0.18 9.38 4.76 71.24 0.34 9.72 16 17 C -0.55 -34.91 9.99 25.60 0.26 -34.66 16 18 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 19 C 0.01 0.62 5.47 84.66 0.46 1.08 16 20 N -0.94 -61.04 13.96 21.45 0.30 -60.74 16 21 Si 0.96 44.26 27.47 68.60 1.88 46.14 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 25 C -0.07 -1.36 4.81 29.66 0.14 -1.21 16 26 C -0.10 -1.30 4.94 30.72 0.15 -1.14 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.04 0.82 5.69 -2.39 -0.01 0.81 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.93 8.11 -2.39 -0.02 0.91 16 34 H 0.11 0.83 8.11 -2.38 -0.02 0.81 16 35 H 0.12 2.33 7.17 -2.91 -0.02 2.31 16 36 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.11 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 45 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 46 H 0.27 16.15 8.31 -92.70 -0.77 15.38 16 47 H 0.07 1.48 6.92 -2.38 -0.02 1.46 16 48 H 0.08 1.44 7.93 -2.39 -0.02 1.42 16 49 H 0.08 0.81 8.12 -2.39 -0.02 0.79 16 50 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -82.23 403.87 5.02 -77.21 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.84 Total: 13.89 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 5.09 Total: -11.37 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.30 Total: -60.74 kcal Atomic # 8 Polarization: -62.04 SS G_CDS: -3.09 Total: -65.13 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -82.23 5.02 -77.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861320120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.862 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds