Wall clock time and date at job start Tue Mar 31 2020 14:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29448 * 117.96071 * 2 1 4 4 C 1.50700 * 117.96193 * 0.51913 * 3 2 1 5 5 C 1.50069 * 124.07426 * 180.49291 * 3 2 1 6 6 C 1.53024 * 110.14612 * 342.87166 * 5 3 2 7 7 H 1.09001 * 109.82112 * 289.64738 * 6 5 3 8 8 C 1.50702 * 109.64100 * 169.11846 * 6 5 3 9 9 O 1.20823 * 120.00227 * 240.77642 * 8 6 5 10 10 O 1.34223 * 119.99692 * 61.05487 * 8 6 5 11 11 C 1.45206 * 116.99854 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46878 * 179.97438 * 11 10 8 13 13 O 1.42902 * 109.47095 * 65.00699 * 12 11 10 14 14 C 1.42900 * 114.00013 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47100 * 179.97438 * 14 13 12 16 16 O 1.42906 * 109.47426 * 64.99838 * 15 14 13 17 17 C 1.42900 * 114.00158 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46824 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00063 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99682 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00438 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46685 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47363 * 119.99854 * 22 20 18 25 25 H 1.48496 * 109.47222 * 240.00395 * 22 20 18 26 26 C 1.53400 * 108.44002 * 49.43501 * 6 5 3 27 27 C 1.50061 * 117.96106 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46741 * 275.24191 * 1 2 3 29 29 H 1.09000 * 109.47086 * 35.23869 * 1 2 3 30 30 H 1.08997 * 109.47318 * 155.24318 * 1 2 3 31 31 H 1.09001 * 109.47352 * 54.91100 * 4 3 2 32 32 H 1.08994 * 109.46692 * 174.91319 * 4 3 2 33 33 H 1.08999 * 109.47084 * 294.90888 * 4 3 2 34 34 H 1.08999 * 109.35859 * 222.66385 * 5 3 2 35 35 H 1.08999 * 109.35664 * 103.07922 * 5 3 2 36 36 H 1.08993 * 109.47519 * 300.00175 * 11 10 8 37 37 H 1.08997 * 109.46829 * 60.00665 * 11 10 8 38 38 H 1.08998 * 109.46456 * 185.00396 * 12 11 10 39 39 H 1.09002 * 109.47451 * 305.00419 * 12 11 10 40 40 H 1.08995 * 109.46810 * 299.99980 * 14 13 12 41 41 H 1.08999 * 109.46722 * 59.99857 * 14 13 12 42 42 H 1.08999 * 109.47639 * 185.00151 * 15 14 13 43 43 H 1.09004 * 109.47237 * 305.00074 * 15 14 13 44 44 H 1.09002 * 109.46879 * 299.99675 * 17 16 15 45 45 H 1.09001 * 109.47213 * 59.99908 * 17 16 15 46 46 H 0.96995 * 120.00023 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.64067 * 52.25026 * 26 6 5 48 48 H 1.08997 * 109.63982 * 172.66338 * 26 6 5 49 49 H 1.09000 * 109.36372 * 42.63976 * 27 2 1 50 50 H 1.09003 * 109.25052 * 282.97825 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1434 0.0000 4 6 1.2696 2.3916 0.0121 5 6 3.6061 1.3032 -0.0107 6 6 4.2795 -0.0074 0.4020 7 1 4.1094 -0.1924 1.4627 8 6 5.7601 0.0774 0.1337 9 8 6.2800 -0.6963 -0.6349 10 8 6.5020 1.0089 0.7530 11 6 7.9212 1.0317 0.4470 12 6 8.5961 2.1521 1.2408 13 8 8.5153 1.8616 2.6377 14 6 9.1197 2.8509 3.4731 15 6 8.9739 2.4387 4.9392 16 8 9.7171 1.2407 5.1734 17 6 9.6469 0.7670 6.5198 18 6 10.4626 -0.4932 6.6520 19 1 10.9823 -0.8926 5.7937 20 6 10.5455 -1.1362 7.8688 21 7 9.9122 -0.6501 8.9140 22 14 11.5561 -2.6987 8.0327 23 1 12.1635 -3.0352 6.7200 24 1 12.6300 -2.4906 9.0369 25 1 10.6776 -3.8127 8.4711 26 6 3.6702 -1.1472 -0.4243 27 6 2.2106 -1.3254 -0.0006 28 1 -0.3633 0.0939 1.0234 29 1 -0.3633 0.8393 -0.5929 30 1 -0.3634 -0.9332 -0.4303 31 1 0.5835 2.3580 0.8583 32 1 1.9147 3.2656 0.1017 33 1 0.7001 2.4539 -0.9152 34 1 3.8901 2.0908 0.6873 35 1 3.9329 1.5771 -1.0138 36 1 8.3668 0.0747 0.7180 37 1 8.0601 1.2082 -0.6196 38 1 9.6426 2.2272 0.9453 39 1 8.0921 3.0968 1.0364 40 1 10.1770 2.9402 3.2237 41 1 8.6269 3.8102 3.3150 42 1 9.3551 3.2338 5.5800 43 1 7.9219 2.2634 5.1645 44 1 10.0418 1.5274 7.1936 45 1 8.6088 0.5570 6.7774 46 1 9.9708 -1.1023 9.7701 47 1 3.7161 -0.8965 -1.4841 48 1 4.2233 -2.0685 -0.2415 49 1 1.7119 -1.9990 -0.6975 50 1 2.1750 -1.7517 1.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861320284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:27 Heat of formation + Delta-G solvation = -191.353624 kcal Electronic energy + Delta-G solvation = -27432.635479 eV Core-core repulsion = 23424.620372 eV Total energy + Delta-G solvation = -4008.015107 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.87719 -39.15370 -38.03339 -36.69109 -36.11077 -33.97886 -32.73160 -32.20136 -31.00825 -28.95025 -27.87798 -26.84495 -26.70659 -23.86009 -23.23187 -22.39767 -22.18829 -21.89654 -20.42454 -17.94711 -17.49016 -16.93440 -16.72013 -16.38348 -16.04814 -15.88050 -15.29814 -15.03088 -14.89902 -14.70911 -14.42191 -14.18729 -14.17421 -14.05365 -13.63472 -13.18098 -12.98330 -12.73218 -12.66043 -12.48521 -12.28910 -12.13665 -12.10843 -12.01133 -11.72203 -11.60391 -11.30111 -11.14342 -11.09501 -10.79887 -10.77702 -10.73804 -10.67391 -10.46580 -10.30424 -9.97825 -9.48019 -9.05410 -8.83221 -8.80686 -8.14191 -6.08177 -4.09272 1.86662 2.11363 2.54317 3.31401 3.37629 3.44761 3.73282 4.17439 4.26881 4.37447 4.50148 4.66718 4.74090 4.81292 4.88425 4.88911 5.02076 5.04878 5.07737 5.14400 5.18341 5.21582 5.24597 5.28343 5.36311 5.37226 5.43441 5.51138 5.54374 5.55610 5.58668 5.64200 5.67131 5.68099 5.71305 5.84682 5.95096 6.02579 6.03483 6.24253 6.33332 6.37153 6.74422 7.12453 7.34498 7.46443 7.67113 7.83194 8.18493 8.61227 9.04647 9.55405 11.03544 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.002202 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.447714 B =12712.718948 C =13445.596666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.130 4.130 3 C -0.128 4.128 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.081 4.081 7 H 0.114 0.886 8 C 0.467 3.533 9 O -0.510 6.510 10 O -0.344 6.344 11 C 0.070 3.930 12 C 0.062 3.938 13 O -0.368 6.368 14 C 0.068 3.932 15 C 0.063 3.937 16 O -0.389 6.389 17 C 0.194 3.806 18 C -0.512 4.512 19 H 0.067 0.933 20 C 0.055 3.945 21 N -0.899 5.899 22 Si 0.907 3.093 23 H -0.270 1.270 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.103 4.103 27 C -0.081 4.081 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.005 0.995 45 H 0.006 0.994 46 H 0.263 0.737 47 H 0.072 0.928 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.417 7.486 -21.363 28.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.130 4.130 3 C -0.128 4.128 4 C -0.174 4.174 5 C -0.106 4.106 6 C -0.100 4.100 7 H 0.132 0.868 8 C 0.310 3.690 9 O -0.399 6.399 10 O -0.260 6.260 11 C -0.004 4.004 12 C -0.015 4.015 13 O -0.287 6.287 14 C -0.008 4.008 15 C -0.014 4.014 16 O -0.309 6.309 17 C 0.120 3.880 18 C -0.550 4.550 19 H 0.085 0.915 20 C -0.146 4.146 21 N -0.539 5.539 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.141 4.141 27 C -0.118 4.118 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.022 0.978 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.238 6.976 -21.465 28.401 hybrid contribution 0.644 -0.433 0.374 0.861 sum -16.595 6.543 -21.092 27.624 Atomic orbital electron populations 1.20981 0.92513 1.02323 1.02031 1.20718 0.95774 0.94382 1.02137 1.20562 0.94570 0.94911 1.02798 1.20920 0.99222 0.95502 1.01799 1.20318 0.91892 0.95900 1.02453 1.21157 0.86662 0.98353 1.03785 0.86836 1.23659 0.90388 0.77698 0.77254 1.90656 1.73956 1.40629 1.34610 1.86555 1.22041 1.53101 1.64344 1.23138 0.77295 1.01077 0.98896 1.22497 0.99018 0.96703 0.83306 1.88105 1.79238 1.46760 1.14566 1.22589 0.97206 0.90327 0.90679 1.22255 0.96567 0.89937 0.92687 1.87911 1.70535 1.39508 1.32969 1.20214 0.96383 0.94258 0.77182 1.21101 1.29932 1.08112 0.95854 0.91504 1.24956 0.96086 0.98218 0.95347 1.69973 1.42948 1.40231 1.00743 0.86284 0.79679 0.82349 0.78215 1.19476 1.20858 1.20826 1.21521 0.95064 0.97696 0.99771 1.20415 0.94179 0.94897 1.02282 0.91512 0.91632 0.92194 0.91577 0.92101 0.91632 0.89474 0.90566 0.89882 0.89913 0.91049 0.92536 0.92703 0.92707 0.92958 0.93603 0.97764 0.97637 0.92743 0.90939 0.90262 0.90455 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 8.98 36.01 0.32 -0.42 16 2 C -0.13 -1.00 5.84 -100.94 -0.59 -1.59 16 3 C -0.13 -1.02 5.84 -100.94 -0.59 -1.60 16 4 C -0.12 -0.75 8.55 36.01 0.31 -0.44 16 5 C -0.07 -0.59 4.96 -28.18 -0.14 -0.73 16 6 C -0.08 -0.81 2.69 -91.55 -0.25 -1.05 16 7 H 0.11 1.13 8.13 -51.93 -0.42 0.71 16 8 C 0.47 6.04 7.23 36.01 0.26 6.30 16 9 O -0.51 -7.75 15.65 -18.75 -0.29 -8.04 16 10 O -0.34 -4.65 10.14 -42.00 -0.43 -5.07 16 11 C 0.07 0.87 5.85 37.16 0.22 1.08 16 12 C 0.06 0.74 6.33 37.16 0.24 0.98 16 13 O -0.37 -6.23 10.28 -48.78 -0.50 -6.73 16 14 C 0.07 1.05 6.32 37.16 0.23 1.29 16 15 C 0.06 1.22 6.32 37.16 0.23 1.45 16 16 O -0.39 -9.86 10.29 -40.08 -0.41 -10.28 16 17 C 0.19 5.50 5.69 36.01 0.20 5.70 16 18 C -0.51 -15.53 9.43 -34.44 -0.32 -15.86 16 19 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 20 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.90 -27.39 13.29 55.43 0.74 -26.66 16 22 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 C -0.10 -0.94 4.70 -26.51 -0.12 -1.07 16 27 C -0.08 -0.61 5.77 -28.18 -0.16 -0.78 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.36 6.33 -51.93 -0.33 0.03 16 30 H 0.06 0.33 7.98 -51.93 -0.41 -0.09 16 31 H 0.07 0.40 7.71 -51.93 -0.40 0.00 16 32 H 0.06 0.36 7.93 -51.93 -0.41 -0.05 16 33 H 0.07 0.37 7.33 -51.93 -0.38 -0.02 16 34 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.08 1.16 8.13 -51.93 -0.42 0.74 16 37 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 45 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 48 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 49 H 0.08 0.50 8.07 -51.93 -0.42 0.08 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 409.97 15.07 6.18 6.18 Total: -1.00 -35.10 409.97 -9.06 -44.16 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -9.07 Total: -5.65 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.25 Total: -5.21 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.74 Total: -26.66 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -1.63 Total: -30.13 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.10 -9.06 -44.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861320284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.189 kcal (2) G-P(sol) polarization free energy of solvation -35.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds