Wall clock time and date at job start Tue Mar 31 2020 14:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.29448 * 117.96071 * 2 1 4 4 C 1.50700 * 117.96193 * 0.51913 * 3 2 1 5 5 C 1.50069 * 124.07426 * 180.49291 * 3 2 1 6 6 C 1.53024 * 110.14612 * 342.87166 * 5 3 2 7 7 H 1.09001 * 109.82112 * 289.64738 * 6 5 3 8 8 C 1.50702 * 109.64100 * 169.11846 * 6 5 3 9 9 O 1.20823 * 120.00227 * 240.77642 * 8 6 5 10 10 O 1.34223 * 119.99692 * 61.05487 * 8 6 5 11 11 C 1.45206 * 116.99854 * 179.97438 * 10 8 6 12 12 C 1.53005 * 109.46878 * 179.97438 * 11 10 8 13 13 O 1.42902 * 109.47095 * 65.00699 * 12 11 10 14 14 C 1.42900 * 114.00013 * 179.97438 * 13 12 11 15 15 C 1.52998 * 109.47100 * 179.97438 * 14 13 12 16 16 O 1.42906 * 109.47426 * 64.99838 * 15 14 13 17 17 C 1.42900 * 114.00158 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46824 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00063 * 359.97438 * 18 17 16 20 20 C 1.37874 * 119.99682 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00438 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00133 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46685 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47363 * 119.99854 * 22 20 18 25 25 H 1.48496 * 109.47222 * 240.00395 * 22 20 18 26 26 C 1.53400 * 108.44002 * 49.43501 * 6 5 3 27 27 C 1.50061 * 117.96106 * 180.02562 * 2 1 3 28 28 H 1.09006 * 109.46741 * 275.24191 * 1 2 3 29 29 H 1.09000 * 109.47086 * 35.23869 * 1 2 3 30 30 H 1.08997 * 109.47318 * 155.24318 * 1 2 3 31 31 H 1.09001 * 109.47352 * 54.91100 * 4 3 2 32 32 H 1.08994 * 109.46692 * 174.91319 * 4 3 2 33 33 H 1.08999 * 109.47084 * 294.90888 * 4 3 2 34 34 H 1.08999 * 109.35859 * 222.66385 * 5 3 2 35 35 H 1.08999 * 109.35664 * 103.07922 * 5 3 2 36 36 H 1.08993 * 109.47519 * 300.00175 * 11 10 8 37 37 H 1.08997 * 109.46829 * 60.00665 * 11 10 8 38 38 H 1.08998 * 109.46456 * 185.00396 * 12 11 10 39 39 H 1.09002 * 109.47451 * 305.00419 * 12 11 10 40 40 H 1.08995 * 109.46810 * 299.99980 * 14 13 12 41 41 H 1.08999 * 109.46722 * 59.99857 * 14 13 12 42 42 H 1.08999 * 109.47639 * 185.00151 * 15 14 13 43 43 H 1.09004 * 109.47237 * 305.00074 * 15 14 13 44 44 H 1.09002 * 109.46879 * 299.99675 * 17 16 15 45 45 H 1.09001 * 109.47213 * 59.99908 * 17 16 15 46 46 H 0.96995 * 120.00023 * 180.02562 * 21 20 18 47 47 H 1.09000 * 109.64067 * 52.25026 * 26 6 5 48 48 H 1.08997 * 109.63982 * 172.66338 * 26 6 5 49 49 H 1.09000 * 109.36372 * 42.63976 * 27 2 1 50 50 H 1.09003 * 109.25052 * 282.97825 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1140 1.1434 0.0000 4 6 1.2696 2.3916 0.0121 5 6 3.6061 1.3032 -0.0107 6 6 4.2795 -0.0074 0.4020 7 1 4.1094 -0.1924 1.4627 8 6 5.7601 0.0774 0.1337 9 8 6.2800 -0.6963 -0.6349 10 8 6.5020 1.0089 0.7530 11 6 7.9212 1.0317 0.4470 12 6 8.5961 2.1521 1.2408 13 8 8.5153 1.8616 2.6377 14 6 9.1197 2.8509 3.4731 15 6 8.9739 2.4387 4.9392 16 8 9.7171 1.2407 5.1734 17 6 9.6469 0.7670 6.5198 18 6 10.4626 -0.4932 6.6520 19 1 10.9823 -0.8926 5.7937 20 6 10.5455 -1.1362 7.8688 21 7 9.9122 -0.6501 8.9140 22 14 11.5561 -2.6987 8.0327 23 1 12.1635 -3.0352 6.7200 24 1 12.6300 -2.4906 9.0369 25 1 10.6776 -3.8127 8.4711 26 6 3.6702 -1.1472 -0.4243 27 6 2.2106 -1.3254 -0.0006 28 1 -0.3633 0.0939 1.0234 29 1 -0.3633 0.8393 -0.5929 30 1 -0.3634 -0.9332 -0.4303 31 1 0.5835 2.3580 0.8583 32 1 1.9147 3.2656 0.1017 33 1 0.7001 2.4539 -0.9152 34 1 3.8901 2.0908 0.6873 35 1 3.9329 1.5771 -1.0138 36 1 8.3668 0.0747 0.7180 37 1 8.0601 1.2082 -0.6196 38 1 9.6426 2.2272 0.9453 39 1 8.0921 3.0968 1.0364 40 1 10.1770 2.9402 3.2237 41 1 8.6269 3.8102 3.3150 42 1 9.3551 3.2338 5.5800 43 1 7.9219 2.2634 5.1645 44 1 10.0418 1.5274 7.1936 45 1 8.6088 0.5570 6.7774 46 1 9.9708 -1.1023 9.7701 47 1 3.7161 -0.8965 -1.4841 48 1 4.2233 -2.0685 -0.2415 49 1 1.7119 -1.9990 -0.6975 50 1 2.1750 -1.7517 1.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861320284.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:26 Heat of formation + Delta-G solvation = -211.464457 kcal Electronic energy + Delta-G solvation = -27433.507550 eV Core-core repulsion = 23424.620372 eV Total energy + Delta-G solvation = -4008.887178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85224 -39.89836 -39.30815 -38.21379 -37.43411 -34.95933 -34.67996 -32.86125 -32.18228 -30.40335 -28.83402 -28.45340 -27.43961 -24.67336 -24.56404 -23.92795 -23.38618 -23.08836 -21.32178 -18.91445 -18.68887 -18.41327 -17.90901 -17.72269 -17.55968 -16.94445 -16.66296 -16.11776 -16.06460 -15.84190 -15.73523 -15.50614 -15.10154 -14.83072 -14.72942 -14.33032 -14.22191 -13.77480 -13.61715 -13.37595 -13.20388 -13.15277 -13.08209 -12.91868 -12.76767 -12.73121 -12.65330 -12.57318 -12.43415 -12.24536 -12.03998 -11.91973 -11.81646 -11.64094 -11.46478 -11.29766 -11.11270 -10.90750 -10.57322 -10.25623 -9.40669 -8.34380 -6.46688 1.07799 1.29038 1.37888 1.39774 1.54465 1.60436 2.33242 2.64952 2.98998 3.18563 3.38269 3.59157 3.72121 3.85158 3.99632 4.06433 4.06953 4.17684 4.22785 4.26570 4.30328 4.32780 4.48370 4.49083 4.53335 4.58125 4.60895 4.63995 4.69763 4.75764 4.76656 4.82199 4.88307 4.89013 4.96368 5.02230 5.03851 5.15742 5.18237 5.18814 5.22052 5.24689 5.37378 5.52787 5.77525 5.93926 6.16582 6.25219 6.52199 6.64120 6.80518 7.25238 8.78288 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.011662 B = 0.002202 C = 0.002082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.447714 B =12712.718948 C =13445.596666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.137 4.137 3 C -0.140 4.140 4 C -0.116 4.116 5 C -0.064 4.064 6 C -0.079 4.079 7 H 0.113 0.887 8 C 0.465 3.535 9 O -0.538 6.538 10 O -0.353 6.353 11 C 0.064 3.936 12 C 0.060 3.940 13 O -0.409 6.409 14 C 0.075 3.925 15 C 0.049 3.951 16 O -0.408 6.408 17 C 0.208 3.792 18 C -0.549 4.549 19 H 0.058 0.942 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.984 3.016 23 H -0.267 1.267 24 H -0.267 1.267 25 H -0.271 1.271 26 C -0.100 4.100 27 C -0.079 4.079 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.040 0.960 44 H -0.008 1.008 45 H -0.017 1.017 46 H 0.272 0.728 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.770 7.910 -22.114 29.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.137 4.137 3 C -0.140 4.140 4 C -0.172 4.172 5 C -0.101 4.101 6 C -0.098 4.098 7 H 0.131 0.869 8 C 0.310 3.690 9 O -0.428 6.428 10 O -0.269 6.269 11 C -0.009 4.009 12 C -0.016 4.016 13 O -0.329 6.329 14 C -0.001 4.001 15 C -0.028 4.028 16 O -0.329 6.329 17 C 0.133 3.867 18 C -0.587 4.587 19 H 0.077 0.923 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.806 3.194 23 H -0.191 1.191 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.137 4.137 27 C -0.116 4.116 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.126 0.874 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.116 0.884 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.010 0.990 45 H 0.000 1.000 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.085 0.915 49 H 0.108 0.892 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.605 7.435 -22.224 29.310 hybrid contribution 0.723 -0.500 0.574 1.050 sum -16.881 6.935 -21.650 28.316 Atomic orbital electron populations 1.20992 0.91211 1.03067 1.02417 1.20906 0.96812 0.94136 1.01803 1.20684 0.94173 0.95815 1.03284 1.20923 0.99142 0.94716 1.02440 1.20288 0.92481 0.94803 1.02495 1.21258 0.84901 0.99765 1.03887 0.86910 1.24244 0.91321 0.76960 0.76471 1.90635 1.74651 1.41598 1.35910 1.86562 1.22614 1.53204 1.64526 1.23286 0.76792 1.00313 1.00517 1.22741 1.00587 0.97450 0.80780 1.88041 1.79694 1.48117 1.17043 1.22597 0.98287 0.91461 0.87780 1.22688 0.95630 0.88180 0.96307 1.87860 1.71736 1.42312 1.30948 1.19840 0.94544 0.93676 0.78646 1.21409 1.31291 1.09610 0.96372 0.92345 1.25975 0.96923 1.01825 0.94547 1.70069 1.43594 1.41793 1.01417 0.85132 0.78182 0.77501 0.78560 1.19073 1.19230 1.19602 1.21490 0.96050 0.96732 0.99445 1.20426 0.93010 0.95471 1.02672 0.91243 0.90845 0.91533 0.91173 0.91897 0.90707 0.89385 0.90400 0.92316 0.87422 0.88935 0.89836 0.91913 0.88375 0.91079 0.94181 0.99048 0.99959 0.91947 0.91252 0.91495 0.89154 0.90305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 8.98 71.24 0.64 -0.62 16 2 C -0.14 -1.93 5.84 -15.10 -0.09 -2.02 16 3 C -0.14 -2.05 5.84 -15.10 -0.09 -2.14 16 4 C -0.12 -1.28 8.55 71.24 0.61 -0.67 16 5 C -0.06 -1.05 4.96 29.66 0.15 -0.90 16 6 C -0.08 -1.60 2.69 -11.40 -0.03 -1.63 16 7 H 0.11 2.29 8.13 -2.39 -0.02 2.27 16 8 C 0.47 12.28 7.23 71.24 0.51 12.80 16 9 O -0.54 -16.79 15.65 21.97 0.34 -16.44 16 10 O -0.35 -9.53 10.14 -48.71 -0.49 -10.03 16 11 C 0.06 1.58 5.85 71.98 0.42 2.00 16 12 C 0.06 1.35 6.33 71.98 0.46 1.81 16 13 O -0.41 -13.53 10.28 -136.03 -1.40 -14.93 16 14 C 0.07 2.17 6.32 71.98 0.45 2.62 16 15 C 0.05 1.87 6.32 71.98 0.45 2.32 16 16 O -0.41 -21.17 10.29 -144.35 -1.49 -22.65 16 17 C 0.21 12.19 5.69 71.24 0.41 12.60 16 18 C -0.55 -34.07 9.43 25.60 0.24 -33.83 16 19 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 20 C 0.01 0.34 5.46 84.65 0.46 0.80 16 21 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 22 Si 0.98 45.62 29.54 68.60 2.03 47.65 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 C -0.10 -1.84 4.70 30.74 0.14 -1.69 16 27 C -0.08 -1.14 5.77 29.66 0.17 -0.97 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.07 0.65 6.33 -2.39 -0.02 0.64 16 30 H 0.07 0.60 7.98 -2.39 -0.02 0.58 16 31 H 0.07 0.72 7.71 -2.39 -0.02 0.70 16 32 H 0.06 0.66 7.93 -2.39 -0.02 0.64 16 33 H 0.07 0.69 7.33 -2.39 -0.02 0.67 16 34 H 0.09 1.42 8.13 -2.39 -0.02 1.40 16 35 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 36 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 45 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 46 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 47 H 0.07 1.31 8.12 -2.39 -0.02 1.29 16 48 H 0.07 1.38 7.90 -2.39 -0.02 1.36 16 49 H 0.09 1.07 8.07 -2.39 -0.02 1.05 16 50 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -76.84 409.97 5.08 -71.76 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.89 Total: 10.86 kcal Atomic # 6 Polarization: -14.44 SS G_CDS: 4.91 Total: -9.53 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.28 Total: -56.68 kcal Atomic # 8 Polarization: -61.02 SS G_CDS: -3.03 Total: -64.05 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -76.84 5.08 -71.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861320284.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.706 kcal (2) G-P(sol) polarization free energy of solvation -76.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds