Wall clock time and date at job start Tue Mar 31 2020 14:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48507 * 109.47062 * 270.00023 * 3 2 1 5 5 H 1.48494 * 109.46963 * 30.00049 * 3 2 1 6 6 H 1.48495 * 109.46940 * 150.00246 * 3 2 1 7 7 C 1.37873 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47497 * 179.97438 * 10 9 7 12 12 C 1.35314 * 125.87024 * 124.99467 * 11 10 9 13 13 C 1.35354 * 106.17421 * 180.02562 * 12 11 10 14 14 C 1.50699 * 126.74833 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.46915 * 95.00048 * 14 13 12 16 16 C 1.46899 * 110.99786 * 185.15326 * 15 14 13 17 17 H 1.09003 * 109.22155 * 326.50531 * 16 15 14 18 18 C 1.52737 * 109.25807 * 85.96178 * 16 15 14 19 19 C 1.53330 * 108.37099 * 171.39474 * 18 16 15 20 20 C 1.52729 * 108.38821 * 290.09364 * 19 18 16 21 21 C 1.50629 * 110.59599 * 51.02842 * 20 19 18 22 22 C 1.38919 * 117.74779 * 162.50024 * 21 20 19 23 23 C 1.37928 * 120.54471 * 179.80242 * 22 21 20 24 24 C 1.38270 * 119.77342 * 359.95414 * 23 22 21 25 25 C 1.37930 * 119.76769 * 0.10944 * 24 23 22 26 26 C 1.37662 * 122.57140 * 342.45362 * 21 20 19 27 27 N 1.33773 * 106.49668 * 0.26161 * 13 12 11 28 28 N 1.28640 * 108.88338 * 359.56845 * 27 13 12 29 29 H 0.97002 * 119.99436 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47075 * 59.99811 * 9 7 2 31 31 H 1.08998 * 109.46555 * 299.99492 * 9 7 2 32 32 H 1.09001 * 109.47440 * 59.99826 * 10 9 7 33 33 H 1.09001 * 109.47505 * 299.99670 * 10 9 7 34 34 H 1.07997 * 126.91126 * 0.06230 * 12 11 10 35 35 H 1.08994 * 109.47164 * 334.99769 * 14 13 12 36 36 H 1.09001 * 109.47027 * 215.00202 * 14 13 12 37 37 H 1.00896 * 111.00195 * 61.20435 * 15 14 13 38 38 H 1.09007 * 109.67859 * 51.67898 * 18 16 15 39 39 H 1.09000 * 109.68503 * 291.11933 * 18 16 15 40 40 H 1.09006 * 109.67917 * 49.81828 * 19 18 16 41 41 H 1.09003 * 109.67638 * 170.32994 * 19 18 16 42 42 H 1.09007 * 109.25062 * 171.31470 * 20 19 18 43 43 H 1.09004 * 109.25293 * 290.73649 * 20 19 18 44 44 H 1.08005 * 119.72679 * 359.78575 * 22 21 20 45 45 H 1.07995 * 120.11760 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.11413 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.72366 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 1.6606 -5.9322 -0.8969 13 6 0.7966 -6.9047 -0.5229 14 6 0.5824 -8.2315 -1.2047 15 7 1.4080 -9.2563 -0.5519 16 6 1.3189 -10.5371 -1.2656 17 1 0.3185 -10.6456 -1.6846 18 6 2.3439 -10.5554 -2.3977 19 6 2.3862 -11.9696 -2.9886 20 6 3.0259 -12.9019 -1.9618 21 6 2.3574 -12.7512 -0.6204 22 6 2.5493 -13.7602 0.3149 23 6 1.9674 -13.6792 1.5628 24 6 1.1873 -12.5846 1.8869 25 6 0.9945 -11.5823 0.9592 26 6 1.5774 -11.6633 -0.2991 27 7 0.1665 -6.4542 0.5678 28 7 0.6174 -5.2843 0.8557 29 1 -0.4849 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8718 -3.6045 -0.8895 34 1 2.3331 -5.9517 -1.7416 35 1 0.8658 -8.1507 -2.2540 36 1 -0.4686 -8.5114 -1.1328 37 1 1.1509 -9.3640 0.4178 38 1 3.3268 -10.2911 -2.0073 39 1 2.0512 -9.8435 -3.1695 40 1 1.3729 -12.3059 -3.2088 41 1 2.9792 -11.9677 -3.9032 42 1 2.9242 -13.9331 -2.3001 43 1 4.0840 -12.6586 -1.8654 44 1 3.1589 -14.6154 0.0627 45 1 2.1209 -14.4679 2.2845 46 1 0.7294 -12.5153 2.8626 47 1 0.3854 -10.7274 1.2132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864625231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:34 Heat of formation + Delta-G solvation = 105.702395 kcal Electronic energy + Delta-G solvation = -26202.504434 eV Core-core repulsion = 22579.265065 eV Total energy + Delta-G solvation = -3623.239369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.73114 -40.48161 -37.08919 -35.55118 -34.83116 -32.91210 -32.15761 -30.53937 -30.31944 -29.87397 -28.29343 -25.62130 -25.34363 -23.47614 -22.93180 -22.41025 -21.72099 -21.29810 -20.03430 -19.56688 -17.31992 -16.99542 -16.02507 -15.99656 -15.78515 -15.60600 -15.35643 -14.85418 -14.70012 -14.49827 -14.31213 -13.86310 -13.67636 -13.44763 -13.27787 -12.91336 -12.81275 -12.49597 -12.32996 -12.12858 -11.94867 -11.70069 -11.63121 -11.23383 -11.14530 -11.02397 -10.86740 -10.76799 -10.57267 -10.50729 -10.30833 -10.01943 -9.43838 -9.29884 -9.17561 -8.91725 -8.75742 -8.52751 -8.41340 -6.16883 -4.23614 1.10465 1.13087 2.15383 2.85770 3.02456 3.23086 3.30363 3.32890 3.49391 4.14241 4.30872 4.32758 4.37955 4.59991 4.69878 4.77840 4.81994 4.89382 4.95075 5.00374 5.10455 5.15309 5.19359 5.23979 5.27912 5.38625 5.41021 5.49325 5.57946 5.60856 5.69600 5.73303 5.78162 5.85128 5.89569 5.92218 6.09120 6.20991 6.23868 6.28525 6.38503 6.40812 6.51859 6.74618 6.88363 7.07419 7.22764 7.40678 7.50523 7.78491 8.10335 8.81643 9.04196 9.41903 10.94127 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.001945 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.796882 B =14390.828767 C =14870.342989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.061 0.939 9 C 0.015 3.985 10 C 0.112 3.888 11 N -0.270 5.270 12 C -0.038 4.038 13 C -0.037 4.037 14 C 0.152 3.848 15 N -0.681 5.681 16 C 0.128 3.872 17 H 0.057 0.943 18 C -0.108 4.108 19 C -0.120 4.120 20 C -0.081 4.081 21 C -0.068 4.068 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.074 4.074 27 N -0.285 5.285 28 N -0.073 5.073 29 H 0.264 0.736 30 H 0.023 0.977 31 H 0.037 0.963 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.183 0.817 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.348 0.652 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 -28.399 -4.974 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.023 4.023 10 C -0.007 4.007 11 N -0.063 5.063 12 C -0.191 4.191 13 C -0.176 4.176 14 C 0.022 3.978 15 N -0.315 5.315 16 C 0.019 3.981 17 H 0.075 0.925 18 C -0.146 4.146 19 C -0.158 4.158 20 C -0.118 4.118 21 C -0.069 4.069 22 C -0.141 4.141 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.074 4.074 27 N -0.151 5.151 28 N -0.053 5.053 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.200 0.800 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.170 0.830 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.163 -27.611 -3.999 28.372 hybrid contribution 0.230 0.561 -0.597 0.851 sum 5.393 -27.049 -4.596 27.962 Atomic orbital electron populations 1.69982 1.06160 1.27132 1.49110 1.25009 0.94898 0.99513 0.94703 0.86471 0.79755 0.82867 0.78199 1.20506 1.21027 1.19685 1.20943 0.93046 0.90099 1.52963 0.92099 1.19400 0.93838 0.89787 0.99248 1.22734 0.95786 0.78582 1.03613 1.47913 1.25877 1.15301 1.17242 1.23311 1.05524 0.90030 1.00231 1.21570 0.99743 0.98163 0.98144 1.20007 0.95296 0.85568 0.96958 1.60644 1.58415 1.05705 1.06730 1.20320 0.98295 0.86505 0.92975 0.92517 1.21579 1.00170 0.96220 0.96634 1.21563 1.01215 0.95128 0.97901 1.20490 0.99610 1.00160 0.91527 1.19579 0.97222 0.93939 0.96137 1.21145 1.00484 0.98713 0.93780 1.21074 0.97872 0.98261 0.96650 1.21066 0.99068 0.94237 0.99419 1.21148 1.00055 0.98962 0.93444 1.19609 0.97704 0.95333 0.94801 1.74991 1.22416 1.03880 1.13848 1.78308 1.03635 1.08451 1.14895 0.92593 0.95850 0.94421 0.89225 0.88766 0.80014 0.89491 0.93530 0.83003 0.90532 0.91384 0.91742 0.91131 0.90921 0.90471 0.86241 0.86160 0.85984 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.38 5.10 -27.88 -0.14 0.23 16 10 C 0.11 2.16 6.39 -4.04 -0.03 2.13 16 11 N -0.27 -5.16 3.44 -61.26 -0.21 -5.37 16 12 C -0.04 -0.60 11.50 -17.04 -0.20 -0.79 16 13 C -0.04 -0.58 6.80 -82.78 -0.56 -1.15 16 14 C 0.15 1.80 6.00 -4.98 -0.03 1.77 16 15 N -0.68 -7.63 6.26 -109.40 -0.68 -8.32 16 16 C 0.13 1.20 2.53 -69.03 -0.17 1.03 16 17 H 0.06 0.52 7.82 -51.93 -0.41 0.11 16 18 C -0.11 -0.88 5.41 -26.70 -0.14 -1.02 16 19 C -0.12 -0.79 5.98 -26.70 -0.16 -0.95 16 20 C -0.08 -0.55 5.67 -28.06 -0.16 -0.71 16 21 C -0.07 -0.61 5.74 -104.61 -0.60 -1.21 16 22 C -0.12 -1.02 9.61 -39.44 -0.38 -1.40 16 23 C -0.12 -1.00 10.05 -39.68 -0.40 -1.40 16 24 C -0.12 -1.08 10.05 -39.68 -0.40 -1.48 16 25 C -0.12 -1.17 8.83 -39.45 -0.35 -1.52 16 26 C -0.07 -0.73 5.55 -104.62 -0.58 -1.31 16 27 N -0.29 -5.56 12.41 33.29 0.41 -5.14 16 28 N -0.07 -1.56 12.91 60.35 0.78 -0.78 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.02 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 1.04 8.12 -51.93 -0.42 0.62 16 32 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.09 1.56 8.07 -51.93 -0.42 1.14 16 34 H 0.18 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.09 0.86 7.55 -51.93 -0.39 0.47 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.35 4.19 6.09 -39.29 -0.24 3.95 16 38 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 39 H 0.07 0.51 7.66 -51.93 -0.40 0.12 16 40 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.41 8.13 -51.92 -0.42 -0.02 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.12 0.74 8.05 -52.48 -0.42 0.32 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 47 H 0.12 1.17 6.56 -52.48 -0.34 0.83 16 LS Contribution 384.11 15.07 5.79 5.79 Total: -1.00 -31.61 384.11 -10.14 -41.75 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.23 Total: 2.25 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -4.71 Total: -20.63 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 1.03 Total: -44.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.61 -10.14 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864625231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.455 kcal (2) G-P(sol) polarization free energy of solvation -31.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds