Wall clock time and date at job start Tue Mar 31 2020 14:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00103 * 2 1 4 4 H 1.48507 * 109.47062 * 270.00023 * 3 2 1 5 5 H 1.48494 * 109.46963 * 30.00049 * 3 2 1 6 6 H 1.48495 * 109.46940 * 150.00246 * 3 2 1 7 7 C 1.37873 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00005 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47134 * 179.97438 * 9 7 2 11 11 N 1.46502 * 109.47497 * 179.97438 * 10 9 7 12 12 C 1.35314 * 125.87024 * 124.99467 * 11 10 9 13 13 C 1.35354 * 106.17421 * 180.02562 * 12 11 10 14 14 C 1.50699 * 126.74833 * 180.02562 * 13 12 11 15 15 N 1.46897 * 109.46915 * 95.00048 * 14 13 12 16 16 C 1.46899 * 110.99786 * 185.15326 * 15 14 13 17 17 H 1.09003 * 109.22155 * 326.50531 * 16 15 14 18 18 C 1.52737 * 109.25807 * 85.96178 * 16 15 14 19 19 C 1.53330 * 108.37099 * 171.39474 * 18 16 15 20 20 C 1.52729 * 108.38821 * 290.09364 * 19 18 16 21 21 C 1.50629 * 110.59599 * 51.02842 * 20 19 18 22 22 C 1.38919 * 117.74779 * 162.50024 * 21 20 19 23 23 C 1.37928 * 120.54471 * 179.80242 * 22 21 20 24 24 C 1.38270 * 119.77342 * 359.95414 * 23 22 21 25 25 C 1.37930 * 119.76769 * 0.10944 * 24 23 22 26 26 C 1.37662 * 122.57140 * 342.45362 * 21 20 19 27 27 N 1.33773 * 106.49668 * 0.26161 * 13 12 11 28 28 N 1.28640 * 108.88338 * 359.56845 * 27 13 12 29 29 H 0.97002 * 119.99436 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47075 * 59.99811 * 9 7 2 31 31 H 1.08998 * 109.46555 * 299.99492 * 9 7 2 32 32 H 1.09001 * 109.47440 * 59.99826 * 10 9 7 33 33 H 1.09001 * 109.47505 * 299.99670 * 10 9 7 34 34 H 1.07997 * 126.91126 * 0.06230 * 12 11 10 35 35 H 1.08994 * 109.47164 * 334.99769 * 14 13 12 36 36 H 1.09001 * 109.47027 * 215.00202 * 14 13 12 37 37 H 1.00896 * 111.00195 * 61.20435 * 15 14 13 38 38 H 1.09007 * 109.67859 * 51.67898 * 18 16 15 39 39 H 1.09000 * 109.68503 * 291.11933 * 18 16 15 40 40 H 1.09006 * 109.67917 * 49.81828 * 19 18 16 41 41 H 1.09003 * 109.67638 * 170.32994 * 19 18 16 42 42 H 1.09007 * 109.25062 * 171.31470 * 20 19 18 43 43 H 1.09004 * 109.25293 * 290.73649 * 20 19 18 44 44 H 1.08005 * 119.72679 * 359.78575 * 22 21 20 45 45 H 1.07995 * 120.11760 * 179.97438 * 23 22 21 46 46 H 1.08004 * 120.11413 * 180.02562 * 24 23 22 47 47 H 1.08004 * 119.72366 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5127 -4.9309 0.0012 12 6 1.6606 -5.9322 -0.8969 13 6 0.7966 -6.9047 -0.5229 14 6 0.5824 -8.2315 -1.2047 15 7 1.4080 -9.2563 -0.5519 16 6 1.3189 -10.5371 -1.2656 17 1 0.3185 -10.6456 -1.6846 18 6 2.3439 -10.5554 -2.3977 19 6 2.3862 -11.9696 -2.9886 20 6 3.0259 -12.9019 -1.9618 21 6 2.3574 -12.7512 -0.6204 22 6 2.5493 -13.7602 0.3149 23 6 1.9674 -13.6792 1.5628 24 6 1.1873 -12.5846 1.8869 25 6 0.9945 -11.5823 0.9592 26 6 1.5774 -11.6633 -0.2991 27 7 0.1665 -6.4542 0.5678 28 7 0.6174 -5.2843 0.8557 29 1 -0.4849 0.8401 0.0004 30 1 0.6247 -2.5571 -0.8896 31 1 0.6241 -2.5566 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8718 -3.6045 -0.8895 34 1 2.3331 -5.9517 -1.7416 35 1 0.8658 -8.1507 -2.2540 36 1 -0.4686 -8.5114 -1.1328 37 1 1.1509 -9.3640 0.4178 38 1 3.3268 -10.2911 -2.0073 39 1 2.0512 -9.8435 -3.1695 40 1 1.3729 -12.3059 -3.2088 41 1 2.9792 -11.9677 -3.9032 42 1 2.9242 -13.9331 -2.3001 43 1 4.0840 -12.6586 -1.8654 44 1 3.1589 -14.6154 0.0627 45 1 2.1209 -14.4679 2.2845 46 1 0.7294 -12.5153 2.8626 47 1 0.3854 -10.7274 1.2132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864625231.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:33 Heat of formation + Delta-G solvation = 87.223784 kcal Electronic energy + Delta-G solvation = -26203.305726 eV Core-core repulsion = 22579.265065 eV Total energy + Delta-G solvation = -3624.040662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.13591 -41.13331 -37.86432 -36.76497 -35.95492 -34.74269 -33.16759 -31.78003 -31.25409 -31.09368 -29.05097 -27.38349 -26.38592 -24.26616 -24.07758 -23.58795 -22.73445 -22.33898 -21.44497 -20.21752 -18.89710 -18.05297 -17.48855 -17.34518 -16.57000 -16.45364 -16.40278 -16.14195 -15.86084 -15.52482 -15.19411 -15.08232 -14.53733 -14.44349 -14.23119 -14.08843 -13.84450 -13.62373 -13.51112 -13.10230 -12.95146 -12.86632 -12.64828 -12.59449 -12.40779 -12.25591 -12.23323 -11.98328 -11.75747 -11.69355 -11.44708 -11.37209 -11.13096 -10.86792 -10.63034 -10.20382 -9.82771 -9.56869 -9.21036 -8.26599 -6.40905 0.43368 0.46646 0.78574 1.41526 1.43776 1.53092 1.54738 1.63340 2.39448 2.81670 3.08693 3.24672 3.53765 3.65862 3.78915 3.80396 3.98344 4.08929 4.15147 4.17785 4.21681 4.26844 4.30203 4.37716 4.42584 4.55572 4.56714 4.59282 4.64441 4.66272 4.82018 4.99017 5.04741 5.06007 5.11803 5.12352 5.19828 5.23669 5.30615 5.34972 5.45967 5.49849 5.59486 5.60824 5.62817 5.74760 5.79692 6.02314 6.05377 6.14513 6.30049 6.75536 7.30286 7.61969 8.85958 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.026240 B = 0.001945 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.796882 B =14390.828767 C =14870.342989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.542 4.542 8 H 0.081 0.919 9 C 0.024 3.976 10 C 0.125 3.875 11 N -0.280 5.280 12 C -0.026 4.026 13 C -0.037 4.037 14 C 0.158 3.842 15 N -0.684 5.684 16 C 0.131 3.869 17 H 0.058 0.942 18 C -0.105 4.105 19 C -0.116 4.116 20 C -0.080 4.080 21 C -0.077 4.077 22 C -0.129 4.129 23 C -0.125 4.125 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.090 4.090 27 N -0.306 5.306 28 N -0.129 5.129 29 H 0.265 0.735 30 H -0.008 1.008 31 H -0.005 1.005 32 H 0.098 0.902 33 H 0.131 0.869 34 H 0.227 0.773 35 H 0.114 0.886 36 H 0.045 0.955 37 H 0.340 0.660 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.081 0.919 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.107 -29.746 -6.773 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.580 4.580 8 H 0.099 0.901 9 C -0.014 4.014 10 C 0.006 3.994 11 N -0.073 5.073 12 C -0.179 4.179 13 C -0.177 4.177 14 C 0.027 3.973 15 N -0.318 5.318 16 C 0.022 3.978 17 H 0.076 0.924 18 C -0.143 4.143 19 C -0.154 4.154 20 C -0.117 4.117 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.155 4.155 26 C -0.091 4.091 27 N -0.172 5.172 28 N -0.108 5.108 29 H 0.073 0.927 30 H 0.011 0.989 31 H 0.013 0.987 32 H 0.116 0.884 33 H 0.149 0.851 34 H 0.244 0.756 35 H 0.132 0.868 36 H 0.063 0.937 37 H 0.161 0.839 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.160 0.840 45 H 0.159 0.841 46 H 0.149 0.851 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.751 -28.978 -5.791 30.551 hybrid contribution -0.602 0.841 -0.041 1.035 sum 7.149 -28.137 -5.833 29.611 Atomic orbital electron populations 1.70146 1.08241 1.28092 1.50817 1.26067 0.95697 1.03881 0.94304 0.85296 0.78599 0.77622 0.78612 1.19463 1.21423 1.18038 1.21457 0.94153 0.90725 1.51707 0.90092 1.19140 0.94222 0.92335 0.95730 1.22491 0.94187 0.76866 1.05833 1.47875 1.25836 1.15752 1.17846 1.24079 1.05264 0.88532 1.00056 1.22255 0.98786 0.99663 0.96994 1.20109 0.95527 0.83852 0.97794 1.60687 1.58023 1.06584 1.06463 1.20372 0.98871 0.85457 0.93117 0.92418 1.21565 0.98952 0.97580 0.96203 1.21556 1.01590 0.93928 0.98333 1.20545 0.99509 1.01199 0.90457 1.19903 0.96872 0.93652 0.97349 1.21479 1.00400 0.99232 0.93582 1.21382 0.97267 0.98389 0.97303 1.21291 0.99567 0.94503 0.99813 1.21241 1.00727 0.99270 0.94219 1.19752 0.98438 0.96033 0.94849 1.74934 1.23121 1.03665 1.15498 1.78304 1.05780 1.09727 1.16993 0.92671 0.98914 0.98661 0.88386 0.85082 0.75620 0.86797 0.93689 0.83936 0.91652 0.90544 0.91695 0.89480 0.89333 0.90070 0.84035 0.84113 0.85072 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.45 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 7 C -0.54 -28.78 9.11 25.60 0.23 -28.55 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 9 C 0.02 1.21 5.10 29.85 0.15 1.37 16 10 C 0.13 4.73 6.39 86.38 0.55 5.28 16 11 N -0.28 -10.63 3.44 -347.73 -1.20 -11.82 16 12 C -0.03 -0.78 11.50 83.49 0.96 0.18 16 13 C -0.04 -1.14 6.80 41.60 0.28 -0.86 16 14 C 0.16 3.52 6.00 85.56 0.51 4.03 16 15 N -0.68 -14.80 6.26 -500.04 -3.13 -17.93 16 16 C 0.13 2.31 2.53 44.06 0.11 2.42 16 17 H 0.06 1.00 7.82 -2.39 -0.02 0.98 16 18 C -0.10 -1.48 5.41 30.62 0.17 -1.32 16 19 C -0.12 -1.24 5.98 30.61 0.18 -1.05 16 20 C -0.08 -0.90 5.67 29.74 0.17 -0.74 16 21 C -0.08 -1.26 5.74 -19.86 -0.11 -1.37 16 22 C -0.13 -1.91 9.61 22.36 0.21 -1.69 16 23 C -0.13 -1.93 10.05 22.20 0.22 -1.70 16 24 C -0.13 -2.40 10.05 22.20 0.22 -2.18 16 25 C -0.14 -2.76 8.83 22.36 0.20 -2.56 16 26 C -0.09 -1.72 5.55 -19.86 -0.11 -1.83 16 27 N -0.31 -12.25 12.41 -48.60 -0.60 -12.85 16 28 N -0.13 -5.71 12.91 37.02 0.48 -5.23 16 29 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 30 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 31 H -0.01 -0.30 8.12 -2.39 -0.02 -0.32 16 32 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 33 H 0.13 3.95 8.07 -2.39 -0.02 3.93 16 34 H 0.23 4.44 8.06 -2.91 -0.02 4.41 16 35 H 0.11 1.93 7.55 -2.39 -0.02 1.91 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.34 8.32 6.09 -89.70 -0.55 7.77 16 38 H 0.06 1.09 8.10 -2.38 -0.02 1.07 16 39 H 0.08 0.94 7.66 -2.39 -0.02 0.92 16 40 H 0.06 0.70 8.10 -2.38 -0.02 0.68 16 41 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 0.72 8.13 -2.38 -0.02 0.70 16 43 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 44 H 0.14 1.38 8.05 -2.91 -0.02 1.36 16 45 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 46 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 47 H 0.11 2.36 6.56 -2.91 -0.02 2.34 16 Total: -1.00 -71.75 384.11 2.70 -69.05 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.42 Total: 20.72 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 4.42 Total: -30.17 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.17 Total: -104.05 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -71.75 2.70 -69.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864625231.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.269 kcal (2) G-P(sol) polarization free energy of solvation -71.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds