Wall clock time and date at job start Tue Mar 31 2020 14:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99479 * 2 1 4 4 H 1.48508 * 109.46772 * 239.99627 * 3 2 1 5 5 H 1.48500 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47371 * 119.99715 * 3 2 1 7 7 C 1.37868 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47431 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47587 * 180.02562 * 10 9 7 12 12 C 1.35310 * 125.87059 * 124.99927 * 11 10 9 13 13 C 1.35355 * 106.17418 * 180.02562 * 12 11 10 14 14 C 1.50695 * 126.74781 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.47584 * 94.99865 * 14 13 12 16 16 C 1.46898 * 111.00491 * 174.84053 * 15 14 13 17 17 H 1.08999 * 109.24430 * 33.63964 * 16 15 14 18 18 C 1.52733 * 109.25434 * 274.17546 * 16 15 14 19 19 C 1.53327 * 108.38177 * 188.65755 * 18 16 15 20 20 C 1.52738 * 108.38380 * 69.88031 * 19 18 16 21 21 C 1.50630 * 110.58744 * 308.90952 * 20 19 18 22 22 C 1.38911 * 117.74815 * 197.48390 * 21 20 19 23 23 C 1.37938 * 120.54442 * 180.28690 * 22 21 20 24 24 C 1.38261 * 119.76991 * 0.09220 * 23 22 21 25 25 C 1.37938 * 119.77212 * 359.89717 * 24 23 22 26 26 C 1.37664 * 122.56692 * 17.71060 * 21 20 19 27 27 N 1.33770 * 106.49563 * 0.25871 * 13 12 11 28 28 N 1.28633 * 108.88699 * 359.56914 * 27 13 12 29 29 H 0.96999 * 120.00290 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47697 * 59.99817 * 9 7 2 31 31 H 1.09002 * 109.47052 * 299.99619 * 9 7 2 32 32 H 1.09009 * 109.47185 * 59.99600 * 10 9 7 33 33 H 1.09002 * 109.46969 * 300.00476 * 10 9 7 34 34 H 1.08003 * 126.91184 * 0.05809 * 12 11 10 35 35 H 1.08996 * 109.47393 * 334.99689 * 14 13 12 36 36 H 1.09006 * 109.46764 * 214.99672 * 14 13 12 37 37 H 1.00898 * 110.99744 * 298.79972 * 15 14 13 38 38 H 1.08997 * 109.68532 * 68.93553 * 18 16 15 39 39 H 1.09004 * 109.68153 * 308.37479 * 18 16 15 40 40 H 1.08992 * 109.67996 * 310.15771 * 19 18 16 41 41 H 1.08998 * 109.68092 * 189.59914 * 19 18 16 42 42 H 1.08993 * 109.25370 * 188.62086 * 20 19 18 43 43 H 1.09001 * 109.25250 * 69.19629 * 20 19 18 44 44 H 1.07998 * 119.72534 * 0.26480 * 22 21 20 45 45 H 1.08001 * 120.10996 * 180.02562 * 23 22 21 46 46 H 1.08004 * 120.10996 * 179.62623 * 24 23 22 47 47 H 1.07999 * 119.72265 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 1.6616 -5.9316 -0.8985 13 6 0.7974 -6.9043 -0.5257 14 6 0.5838 -8.2307 -1.2083 15 7 1.4089 -9.2560 -0.5556 16 6 1.1355 -10.5865 -1.1149 17 1 0.9000 -10.4893 -2.1747 18 6 -0.0581 -11.2028 -0.3882 19 6 -0.1913 -12.6648 -0.8305 20 6 0.9807 -13.4527 -0.2487 21 6 2.2861 -12.7701 -0.5634 22 6 3.4516 -13.5163 -0.4430 23 6 4.6792 -12.9472 -0.7111 24 6 4.7513 -11.6227 -1.1012 25 6 3.5951 -10.8802 -1.2216 26 6 2.3577 -11.4523 -0.9550 27 7 0.1666 -6.4545 0.5647 28 7 0.6172 -5.2848 0.8537 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8722 -3.6042 0.8906 33 1 2.8721 -3.6042 -0.8894 34 1 2.3348 -5.9506 -1.7429 35 1 0.8680 -8.1494 -2.2575 36 1 -0.4673 -8.5108 -1.1372 37 1 2.3896 -9.0290 -0.6251 38 1 -0.9661 -10.6573 -0.6453 39 1 0.1049 -11.1584 0.6887 40 1 -0.1684 -12.7226 -1.9186 41 1 -1.1302 -13.0763 -0.4601 42 1 0.9872 -14.4554 -0.6760 43 1 0.8641 -13.5244 0.8327 44 1 3.3961 -14.5504 -0.1365 45 1 5.5808 -13.5340 -0.6156 46 1 5.7100 -11.1699 -1.3068 47 1 3.6524 -9.8456 -1.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864625232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:37 Heat of formation + Delta-G solvation = 107.093040 kcal Electronic energy + Delta-G solvation = -26208.993815 eV Core-core repulsion = 22585.814749 eV Total energy + Delta-G solvation = -3623.179066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.73584 -40.49480 -37.10010 -35.54754 -34.85096 -32.91606 -32.18353 -30.53261 -30.34477 -29.87478 -28.28288 -25.67082 -25.31653 -23.48715 -22.93598 -22.41677 -21.75417 -21.24775 -20.10960 -19.56901 -17.37080 -16.95932 -16.02729 -16.00358 -15.79163 -15.61684 -15.35494 -14.85200 -14.65665 -14.50477 -14.22800 -14.04733 -13.79232 -13.44057 -13.32509 -13.01219 -12.65952 -12.47908 -12.37736 -12.07175 -11.90689 -11.70122 -11.61425 -11.21580 -11.16242 -11.07009 -10.86750 -10.74553 -10.53761 -10.52025 -10.26263 -10.02697 -9.45700 -9.27898 -9.20337 -8.93729 -8.78972 -8.52908 -8.41318 -6.17061 -4.24135 1.08250 1.10322 2.11394 2.87935 3.01380 3.23858 3.29595 3.31069 3.46966 4.13200 4.30721 4.32225 4.38343 4.57363 4.68839 4.75531 4.77199 4.87226 4.96886 5.04422 5.10394 5.14453 5.17710 5.19071 5.23590 5.36465 5.41801 5.48448 5.59756 5.61901 5.69168 5.74543 5.78093 5.81193 5.87409 5.94848 6.14656 6.20398 6.22093 6.24889 6.37860 6.39259 6.51958 6.72208 6.88353 7.05701 7.22514 7.39847 7.50014 7.77873 8.09726 8.80876 9.06857 9.41364 10.93862 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.001985 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.075054 B =14099.235592 C =14959.522734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.016 3.984 10 C 0.112 3.888 11 N -0.269 5.269 12 C -0.056 4.056 13 C -0.032 4.032 14 C 0.151 3.849 15 N -0.677 5.677 16 C 0.130 3.870 17 H 0.057 0.943 18 C -0.109 4.109 19 C -0.120 4.120 20 C -0.082 4.082 21 C -0.067 4.067 22 C -0.122 4.122 23 C -0.121 4.121 24 C -0.121 4.121 25 C -0.119 4.119 26 C -0.073 4.073 27 N -0.268 5.268 28 N -0.074 5.074 29 H 0.265 0.735 30 H 0.023 0.977 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.180 0.820 35 H 0.045 0.955 36 H 0.089 0.911 37 H 0.343 0.657 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.122 0.878 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.392 -28.181 -5.744 29.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.572 4.572 8 H 0.078 0.922 9 C -0.022 4.022 10 C -0.007 4.007 11 N -0.062 5.062 12 C -0.209 4.209 13 C -0.172 4.172 14 C 0.021 3.979 15 N -0.311 5.311 16 C 0.021 3.979 17 H 0.074 0.926 18 C -0.147 4.147 19 C -0.158 4.158 20 C -0.119 4.119 21 C -0.067 4.067 22 C -0.140 4.140 23 C -0.139 4.139 24 C -0.139 4.139 25 C -0.137 4.137 26 C -0.073 4.073 27 N -0.134 5.134 28 N -0.053 5.053 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.056 0.944 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.197 0.803 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.164 0.836 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.140 0.860 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.024 -27.659 -3.938 28.386 hybrid contribution 1.796 0.983 -1.879 2.779 sum 6.820 -26.676 -5.817 28.142 Atomic orbital electron populations 1.69965 1.06154 1.27273 1.48947 1.25004 0.94897 0.99496 0.94684 0.86533 0.79487 0.82537 0.78722 1.20105 1.21107 1.19999 1.20897 0.92988 0.90118 1.53174 0.92176 1.19395 0.93823 0.89737 0.99278 1.22733 0.95818 0.78656 1.03532 1.47913 1.25909 1.15198 1.17176 1.23329 1.06411 0.90601 1.00570 1.21571 0.99742 0.97878 0.98042 1.20017 0.99258 0.85401 0.93231 1.60545 1.10943 1.00252 1.59393 1.20310 0.92806 0.87891 0.96921 0.92580 1.21578 0.97095 0.94403 1.01598 1.21564 0.97856 0.95550 1.00810 1.20501 0.91393 0.98447 1.01515 1.19596 0.95291 0.93211 0.98642 1.21157 0.92157 0.99819 1.00891 1.21072 0.97594 0.95407 0.99808 1.21048 0.98207 0.94480 1.00137 1.21089 0.92287 0.99687 1.00662 1.19619 0.94373 0.93773 0.99577 1.75034 1.21980 1.03209 1.13185 1.78359 1.03484 1.08593 1.14912 0.92512 0.95857 0.94377 0.89207 0.88873 0.80273 0.93649 0.89268 0.83606 0.91271 0.90426 0.91790 0.91096 0.90915 0.90403 0.86207 0.86154 0.86043 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.72 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 7 C -0.53 -14.15 9.11 -34.44 -0.31 -14.46 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.39 5.10 -27.88 -0.14 0.24 16 10 C 0.11 2.13 6.39 -4.04 -0.03 2.11 16 11 N -0.27 -5.11 3.44 -61.26 -0.21 -5.32 16 12 C -0.06 -0.86 11.50 -17.05 -0.20 -1.06 16 13 C -0.03 -0.51 6.80 -82.78 -0.56 -1.08 16 14 C 0.15 1.78 6.00 -4.98 -0.03 1.75 16 15 N -0.68 -7.57 6.26 -109.41 -0.68 -8.26 16 16 C 0.13 1.23 2.53 -69.04 -0.17 1.05 16 17 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 18 C -0.11 -0.98 5.40 -26.70 -0.14 -1.13 16 19 C -0.12 -0.85 5.98 -26.70 -0.16 -1.01 16 20 C -0.08 -0.58 5.67 -28.05 -0.16 -0.74 16 21 C -0.07 -0.59 5.74 -104.62 -0.60 -1.19 16 22 C -0.12 -0.99 9.61 -39.44 -0.38 -1.37 16 23 C -0.12 -0.96 10.05 -39.68 -0.40 -1.36 16 24 C -0.12 -1.01 10.05 -39.68 -0.40 -1.41 16 25 C -0.12 -1.08 8.84 -39.44 -0.35 -1.43 16 26 C -0.07 -0.70 5.55 -104.62 -0.58 -1.28 16 27 N -0.27 -5.36 12.41 33.29 0.41 -4.95 16 28 N -0.07 -1.59 12.91 60.35 0.78 -0.81 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.04 1.05 8.12 -51.93 -0.42 0.63 16 32 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 33 H 0.09 1.52 8.07 -51.93 -0.42 1.10 16 34 H 0.18 1.99 8.06 -52.48 -0.42 1.57 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 1.06 7.54 -51.93 -0.39 0.67 16 37 H 0.34 3.65 6.09 -39.29 -0.24 3.41 16 38 H 0.07 0.62 7.65 -51.93 -0.40 0.23 16 39 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 43 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.12 0.74 8.05 -52.49 -0.42 0.31 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 46 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.12 0.95 6.55 -52.49 -0.34 0.61 16 LS Contribution 384.09 15.07 5.79 5.79 Total: -1.00 -32.11 384.09 -10.14 -42.25 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.23 Total: 1.59 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -4.71 Total: -20.73 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 1.03 Total: -44.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.11 -10.14 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864625232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.343 kcal (2) G-P(sol) polarization free energy of solvation -32.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds