Wall clock time and date at job start Tue Mar 31 2020 14:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99479 * 2 1 4 4 H 1.48508 * 109.46772 * 239.99627 * 3 2 1 5 5 H 1.48500 * 109.47402 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47371 * 119.99715 * 3 2 1 7 7 C 1.37868 * 120.00360 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00392 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99965 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47431 * 179.97438 * 9 7 2 11 11 N 1.46497 * 109.47587 * 180.02562 * 10 9 7 12 12 C 1.35310 * 125.87059 * 124.99927 * 11 10 9 13 13 C 1.35355 * 106.17418 * 180.02562 * 12 11 10 14 14 C 1.50695 * 126.74781 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.47584 * 94.99865 * 14 13 12 16 16 C 1.46898 * 111.00491 * 174.84053 * 15 14 13 17 17 H 1.08999 * 109.24430 * 33.63964 * 16 15 14 18 18 C 1.52733 * 109.25434 * 274.17546 * 16 15 14 19 19 C 1.53327 * 108.38177 * 188.65755 * 18 16 15 20 20 C 1.52738 * 108.38380 * 69.88031 * 19 18 16 21 21 C 1.50630 * 110.58744 * 308.90952 * 20 19 18 22 22 C 1.38911 * 117.74815 * 197.48390 * 21 20 19 23 23 C 1.37938 * 120.54442 * 180.28690 * 22 21 20 24 24 C 1.38261 * 119.76991 * 0.09220 * 23 22 21 25 25 C 1.37938 * 119.77212 * 359.89717 * 24 23 22 26 26 C 1.37664 * 122.56692 * 17.71060 * 21 20 19 27 27 N 1.33770 * 106.49563 * 0.25871 * 13 12 11 28 28 N 1.28633 * 108.88699 * 359.56914 * 27 13 12 29 29 H 0.96999 * 120.00290 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47697 * 59.99817 * 9 7 2 31 31 H 1.09002 * 109.47052 * 299.99619 * 9 7 2 32 32 H 1.09009 * 109.47185 * 59.99600 * 10 9 7 33 33 H 1.09002 * 109.46969 * 300.00476 * 10 9 7 34 34 H 1.08003 * 126.91184 * 0.05809 * 12 11 10 35 35 H 1.08996 * 109.47393 * 334.99689 * 14 13 12 36 36 H 1.09006 * 109.46764 * 214.99672 * 14 13 12 37 37 H 1.00898 * 110.99744 * 298.79972 * 15 14 13 38 38 H 1.08997 * 109.68532 * 68.93553 * 18 16 15 39 39 H 1.09004 * 109.68153 * 308.37479 * 18 16 15 40 40 H 1.08992 * 109.67996 * 310.15771 * 19 18 16 41 41 H 1.08998 * 109.68092 * 189.59914 * 19 18 16 42 42 H 1.08993 * 109.25370 * 188.62086 * 20 19 18 43 43 H 1.09001 * 109.25250 * 69.19629 * 20 19 18 44 44 H 1.07998 * 119.72534 * 0.26480 * 22 21 20 45 45 H 1.08001 * 120.10996 * 180.02562 * 23 22 21 46 46 H 1.08004 * 120.10996 * 179.62623 * 24 23 22 47 47 H 1.07999 * 119.72265 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6967 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 1.6616 -5.9316 -0.8985 13 6 0.7974 -6.9043 -0.5257 14 6 0.5838 -8.2307 -1.2083 15 7 1.4089 -9.2560 -0.5556 16 6 1.1355 -10.5865 -1.1149 17 1 0.9000 -10.4893 -2.1747 18 6 -0.0581 -11.2028 -0.3882 19 6 -0.1913 -12.6648 -0.8305 20 6 0.9807 -13.4527 -0.2487 21 6 2.2861 -12.7701 -0.5634 22 6 3.4516 -13.5163 -0.4430 23 6 4.6792 -12.9472 -0.7111 24 6 4.7513 -11.6227 -1.1012 25 6 3.5951 -10.8802 -1.2216 26 6 2.3577 -11.4523 -0.9550 27 7 0.1666 -6.4545 0.5647 28 7 0.6172 -5.2848 0.8537 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8896 31 1 0.6242 -2.5567 0.8903 32 1 2.8722 -3.6042 0.8906 33 1 2.8721 -3.6042 -0.8894 34 1 2.3348 -5.9506 -1.7429 35 1 0.8680 -8.1494 -2.2575 36 1 -0.4673 -8.5108 -1.1372 37 1 2.3896 -9.0290 -0.6251 38 1 -0.9661 -10.6573 -0.6453 39 1 0.1049 -11.1584 0.6887 40 1 -0.1684 -12.7226 -1.9186 41 1 -1.1302 -13.0763 -0.4601 42 1 0.9872 -14.4554 -0.6760 43 1 0.8641 -13.5244 0.8327 44 1 3.3961 -14.5504 -0.1365 45 1 5.5808 -13.5340 -0.6156 46 1 5.7100 -11.1699 -1.3068 47 1 3.6524 -9.8456 -1.5260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864625232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:36 Heat of formation + Delta-G solvation = 88.017156 kcal Electronic energy + Delta-G solvation = -26209.821008 eV Core-core repulsion = 22585.814749 eV Total energy + Delta-G solvation = -3624.006259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.12917 -41.12623 -37.85981 -36.75715 -35.98130 -34.74504 -33.16993 -31.77096 -31.24605 -31.08791 -29.04183 -27.39587 -26.38933 -24.25395 -24.11432 -23.56125 -22.71609 -22.31330 -21.51460 -20.22858 -18.91591 -18.04195 -17.44514 -17.33543 -16.57058 -16.45221 -16.39512 -16.17449 -15.63974 -15.48727 -15.38231 -15.10738 -14.63310 -14.46379 -14.31563 -14.07798 -13.75849 -13.64075 -13.39173 -13.09610 -12.95973 -12.83563 -12.65389 -12.58452 -12.46544 -12.25641 -12.24093 -11.94646 -11.79859 -11.62264 -11.47339 -11.39633 -11.14601 -10.84829 -10.62274 -10.20237 -9.79904 -9.54381 -9.17135 -8.26340 -6.40970 0.45638 0.49319 0.77610 1.41474 1.45340 1.52805 1.55949 1.63900 2.39445 2.84011 3.08735 3.26376 3.50093 3.67419 3.78953 3.81661 3.99301 4.09276 4.11545 4.18006 4.22023 4.26466 4.30774 4.36724 4.41179 4.53702 4.56470 4.58140 4.64729 4.68016 4.80942 5.00412 5.02464 5.05856 5.09256 5.13605 5.18758 5.23428 5.30613 5.33699 5.45675 5.47699 5.60397 5.60877 5.65009 5.76501 5.79671 6.04560 6.05218 6.16222 6.42241 6.75374 7.30269 7.65634 8.85968 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.001985 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.075054 B =14099.235592 C =14959.522734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.975 3.025 4 H -0.259 1.259 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.024 3.976 10 C 0.125 3.875 11 N -0.279 5.279 12 C -0.039 4.039 13 C -0.034 4.034 14 C 0.157 3.843 15 N -0.690 5.690 16 C 0.135 3.865 17 H 0.065 0.935 18 C -0.108 4.108 19 C -0.114 4.114 20 C -0.081 4.081 21 C -0.080 4.080 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.131 4.131 26 C -0.090 4.090 27 N -0.297 5.297 28 N -0.132 5.132 29 H 0.265 0.735 30 H -0.008 1.008 31 H -0.006 1.006 32 H 0.098 0.902 33 H 0.132 0.868 34 H 0.230 0.770 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.346 0.654 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -29.379 -7.358 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.099 0.901 9 C -0.014 4.014 10 C 0.006 3.994 11 N -0.072 5.072 12 C -0.192 4.192 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.325 5.325 16 C 0.026 3.974 17 H 0.083 0.917 18 C -0.147 4.147 19 C -0.152 4.152 20 C -0.118 4.118 21 C -0.081 4.081 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.091 4.091 27 N -0.162 5.162 28 N -0.110 5.110 29 H 0.073 0.927 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.116 0.884 33 H 0.150 0.850 34 H 0.246 0.754 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.536 -28.878 -5.539 30.355 hybrid contribution 1.014 1.230 -1.398 2.120 sum 8.550 -27.648 -6.937 29.760 Atomic orbital electron populations 1.70136 1.08252 1.28175 1.50717 1.26068 0.95691 1.03891 0.94291 0.85354 0.78030 0.77254 0.79523 1.18383 1.21512 1.18952 1.21425 0.94150 0.90728 1.51852 0.90061 1.19137 0.94235 0.92364 0.95703 1.22489 0.94176 0.76882 1.05834 1.47880 1.25823 1.15702 1.17802 1.24135 1.05952 0.88827 1.00302 1.22272 0.98864 0.99474 0.96845 1.20076 0.99307 0.83645 0.94313 1.60481 1.11060 1.00839 1.60075 1.20287 0.92959 0.86938 0.97209 0.91700 1.21557 0.96923 0.95940 1.00252 1.21538 0.98472 0.94099 1.01122 1.20531 0.90617 0.99107 1.01510 1.19871 0.96341 0.93283 0.98589 1.21444 0.92036 1.00748 1.00635 1.21393 0.98403 0.95551 0.99128 1.21324 0.98717 0.94845 1.00027 1.21272 0.92464 1.00267 1.00965 1.19729 0.94516 0.94239 1.00597 1.74973 1.22950 1.03159 1.15116 1.78352 1.05745 1.09829 1.17115 0.92662 0.98951 0.98723 0.88355 0.85034 0.75399 0.90514 0.89771 0.83273 0.91637 0.92561 0.91229 0.90022 0.89239 0.90583 0.84425 0.84212 0.84530 0.85555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.44 0.28 -56.21 16 2 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 3 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.54 -28.74 9.11 25.60 0.23 -28.50 16 8 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.02 1.20 5.10 29.85 0.15 1.36 16 10 C 0.13 4.66 6.39 86.38 0.55 5.22 16 11 N -0.28 -10.47 3.44 -347.72 -1.20 -11.66 16 12 C -0.04 -1.12 11.50 83.49 0.96 -0.16 16 13 C -0.03 -1.04 6.80 41.60 0.28 -0.76 16 14 C 0.16 3.45 6.00 85.56 0.51 3.97 16 15 N -0.69 -14.64 6.26 -500.05 -3.13 -17.77 16 16 C 0.13 2.39 2.53 44.06 0.11 2.51 16 17 H 0.07 1.03 7.83 -2.39 -0.02 1.01 16 18 C -0.11 -1.92 5.40 30.62 0.17 -1.76 16 19 C -0.11 -1.48 5.98 30.62 0.18 -1.29 16 20 C -0.08 -1.04 5.67 29.74 0.17 -0.87 16 21 C -0.08 -1.32 5.74 -19.86 -0.11 -1.44 16 22 C -0.13 -1.90 9.61 22.36 0.21 -1.68 16 23 C -0.13 -1.78 10.05 22.20 0.22 -1.55 16 24 C -0.13 -1.98 10.05 22.20 0.22 -1.75 16 25 C -0.13 -2.20 8.84 22.36 0.20 -2.01 16 26 C -0.09 -1.63 5.55 -19.86 -0.11 -1.74 16 27 N -0.30 -12.12 12.41 -48.60 -0.60 -12.72 16 28 N -0.13 -5.85 12.91 37.02 0.48 -5.37 16 29 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 30 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 31 H -0.01 -0.34 8.12 -2.39 -0.02 -0.35 16 32 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 33 H 0.13 3.87 8.07 -2.39 -0.02 3.85 16 34 H 0.23 3.98 8.06 -2.91 -0.02 3.96 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.94 7.54 -2.38 -0.02 1.92 16 37 H 0.35 6.83 6.09 -89.70 -0.55 6.28 16 38 H 0.06 1.17 7.65 -2.39 -0.02 1.15 16 39 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 40 H 0.07 0.83 8.10 -2.39 -0.02 0.81 16 41 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.09 0.84 8.12 -2.39 -0.02 0.82 16 43 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.14 1.39 8.05 -2.91 -0.02 1.37 16 45 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 47 H 0.13 1.80 6.55 -2.91 -0.02 1.78 16 Total: -1.00 -73.33 384.09 2.70 -70.63 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.42 Total: 18.84 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.42 Total: -30.04 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -4.16 Total: -103.73 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -73.33 2.70 -70.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864625232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.643 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds