Wall clock time and date at job start Tue Mar 31 2020 15:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.52996 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.05673 * 306.82016 * 4 3 2 6 6 C 1.54270 * 110.03568 * 68.23628 * 4 3 2 7 7 C 1.54881 * 104.19776 * 142.89629 * 6 4 3 8 8 C 1.54895 * 102.74812 * 322.06102 * 7 6 4 9 9 C 1.53875 * 110.03412 * 185.40492 * 4 3 2 10 10 H 1.08996 * 110.03466 * 121.42452 * 9 4 3 11 11 C 1.50703 * 110.02975 * 359.97438 * 9 4 3 12 12 O 1.20826 * 120.00267 * 284.67833 * 11 9 4 13 13 O 1.34235 * 119.99886 * 104.67781 * 11 9 4 14 14 C 1.45195 * 116.99990 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.47420 * 30.00033 * 14 13 11 16 16 C 1.50699 * 109.47025 * 269.99927 * 14 13 11 17 17 H 1.08001 * 119.99843 * 120.00216 * 16 14 13 18 18 C 1.37878 * 120.00092 * 299.99857 * 16 14 13 19 19 N 1.31518 * 119.99867 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99820 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47150 * 90.00192 * 20 18 16 22 22 H 1.48507 * 109.46842 * 209.99940 * 20 18 16 23 23 H 1.48498 * 109.47505 * 329.99974 * 20 18 16 24 24 C 1.53004 * 109.47193 * 150.00050 * 14 13 11 25 25 C 1.50699 * 109.46886 * 295.00003 * 24 14 13 26 26 O 1.20825 * 120.00193 * 359.97438 * 25 24 14 27 27 O 1.34230 * 120.00086 * 179.97438 * 25 24 14 28 28 C 1.45204 * 117.00368 * 179.97438 * 27 25 24 29 29 C 1.52992 * 109.47369 * 180.02562 * 28 27 25 30 30 H 1.08998 * 109.47620 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47110 * 300.00614 * 1 2 3 32 32 H 1.09000 * 109.46634 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.47110 * 239.99386 * 2 1 3 34 34 H 1.09000 * 109.46634 * 119.99849 * 2 1 3 35 35 H 1.08999 * 109.47118 * 59.99244 * 3 2 1 36 36 H 1.09002 * 109.46661 * 299.99807 * 3 2 1 37 37 H 1.09003 * 110.48469 * 24.21442 * 6 4 3 38 38 H 1.09003 * 110.59769 * 261.63130 * 6 4 3 39 39 H 1.09000 * 110.75797 * 203.74823 * 7 6 4 40 40 H 1.09003 * 110.75947 * 80.36938 * 7 6 4 41 41 H 1.09008 * 110.48302 * 279.26409 * 8 7 6 42 42 H 1.09000 * 110.60183 * 156.67785 * 8 7 6 43 43 H 0.96996 * 119.99362 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47064 * 54.99540 * 24 14 13 45 45 H 1.08997 * 109.47440 * 175.00324 * 24 14 13 46 46 H 1.09003 * 109.46936 * 300.00903 * 28 27 25 47 47 H 1.09005 * 109.46453 * 60.00080 * 28 27 25 48 48 H 1.08995 * 109.47387 * 180.02562 * 29 28 27 49 49 H 1.09011 * 109.47134 * 300.00248 * 29 28 27 50 50 H 1.08998 * 109.47147 * 59.99943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9442 0.8286 0.8188 6 6 4.0980 0.9052 -1.3470 7 6 5.3531 1.7662 -1.6336 8 6 4.9272 3.1687 -1.1328 9 6 4.0973 2.8816 0.1355 10 1 4.7272 2.9663 1.0210 11 6 2.9440 3.8473 0.2269 12 8 2.3110 4.1278 -0.7633 13 8 2.6200 4.3959 1.4084 14 6 1.4983 5.3178 1.4216 15 1 0.7883 5.0374 0.6437 16 6 1.9955 6.7175 1.1672 17 1 1.6365 7.2709 0.3121 18 6 2.9086 7.2916 2.0261 19 7 3.3461 6.6174 3.0672 20 14 3.5243 9.0268 1.7110 21 1 2.6384 9.9991 2.4003 22 1 4.9085 9.1630 2.2314 23 1 3.5155 9.2978 0.2510 24 6 0.8083 5.2619 2.7861 25 6 0.2042 3.8961 2.9878 26 8 0.3139 3.0540 2.1283 27 8 -0.4557 3.6150 4.1224 28 6 -1.0119 2.2796 4.2480 29 6 -1.7222 2.1477 5.5966 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 3.3535 1.0431 -2.1311 38 1 4.3689 -0.1471 -1.2603 39 1 5.5715 1.7873 -2.7013 40 1 6.2107 1.3989 -1.0699 41 1 4.3165 3.6722 -1.8823 42 1 5.8023 3.7706 -0.8879 43 1 3.9888 7.0212 3.6711 44 1 1.5393 5.4554 3.5711 45 1 0.0226 6.0162 2.8271 46 1 -1.7261 2.1063 3.4430 47 1 -0.2094 1.5445 4.1862 48 1 -2.1394 1.1452 5.6911 49 1 -1.0082 2.3212 6.4019 50 1 -2.5247 2.8828 5.6580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870617745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:30 Heat of formation + Delta-G solvation = -212.981446 kcal Electronic energy + Delta-G solvation = -30525.718130 eV Core-core repulsion = 26516.765171 eV Total energy + Delta-G solvation = -4008.952959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97778 -39.57453 -37.52000 -36.07155 -34.99545 -34.08320 -33.02234 -31.58443 -30.35006 -29.49667 -28.84855 -26.24216 -24.81654 -23.34431 -22.35932 -21.36720 -21.18530 -20.15405 -19.73661 -18.45107 -17.23606 -16.73804 -16.21219 -16.07081 -15.61018 -15.34403 -15.13563 -14.68000 -14.59079 -14.19764 -13.94984 -13.69365 -13.35164 -12.97780 -12.80674 -12.64431 -12.32818 -12.11747 -12.03184 -11.90257 -11.60726 -11.45276 -11.35648 -11.22637 -11.08127 -11.00257 -10.83526 -10.79250 -10.70510 -10.56071 -10.39984 -10.33198 -10.19466 -10.11958 -10.01572 -9.87348 -9.65293 -9.39724 -9.03723 -8.72480 -8.65993 -6.22945 -4.39701 3.02708 3.18860 3.27754 3.31101 3.35304 3.54174 4.07886 4.27545 4.81043 4.91196 5.01890 5.08533 5.12429 5.16121 5.35234 5.37993 5.39336 5.48961 5.52857 5.74696 5.77409 5.81408 5.87991 5.89220 5.89599 5.91840 5.99041 6.03703 6.08670 6.11080 6.15463 6.21193 6.23510 6.36796 6.38292 6.46049 6.47316 6.57529 6.63274 6.66821 6.78874 6.88009 7.00510 7.16820 7.31791 7.70000 7.98920 8.11940 8.56215 8.69102 9.24292 9.39060 10.79430 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007672 B = 0.006654 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.960735 B = 4207.079896 C = 7271.764393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.136 4.136 4 C -0.073 4.073 5 H 0.074 0.926 6 C -0.116 4.116 7 C -0.122 4.122 8 C -0.113 4.113 9 C -0.088 4.088 10 H 0.092 0.908 11 C 0.477 3.523 12 O -0.532 6.532 13 O -0.332 6.332 14 C 0.232 3.768 15 H 0.044 0.956 16 C -0.546 4.546 17 H 0.068 0.932 18 C 0.081 3.919 19 N -0.861 5.861 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.283 1.283 23 H -0.271 1.271 24 C -0.103 4.103 25 C 0.456 3.544 26 O -0.511 6.511 27 O -0.366 6.366 28 C 0.060 3.940 29 C -0.150 4.150 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.267 0.733 44 H 0.139 0.861 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.065 0.935 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -11.190 0.472 11.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.173 4.173 4 C -0.092 4.092 5 H 0.092 0.908 6 C -0.154 4.154 7 C -0.159 4.159 8 C -0.151 4.151 9 C -0.108 4.108 10 H 0.110 0.890 11 C 0.321 3.679 12 O -0.424 6.424 13 O -0.246 6.246 14 C 0.179 3.821 15 H 0.062 0.938 16 C -0.583 4.583 17 H 0.086 0.914 18 C -0.125 4.125 19 N -0.496 5.496 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.140 4.140 25 C 0.301 3.699 26 O -0.399 6.399 27 O -0.285 6.285 28 C -0.014 4.014 29 C -0.208 4.208 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.077 0.923 44 H 0.157 0.843 45 H 0.119 0.881 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.978 -11.350 0.150 11.522 hybrid contribution 0.342 0.855 -0.071 0.924 sum -1.636 -10.495 0.080 10.622 Atomic orbital electron populations 1.21723 0.96213 1.00298 1.02339 1.21442 0.95728 0.97276 1.00741 1.22129 0.93491 0.96728 1.04936 1.21658 0.96463 0.93354 0.97726 0.90806 1.22450 0.97252 0.98499 0.97161 1.22468 0.97614 0.95305 1.00532 1.22368 0.99117 0.97252 0.96327 1.21677 0.94960 0.93634 1.00531 0.88967 1.22721 0.83953 0.78602 0.82642 1.90489 1.52811 1.61046 1.38059 1.86606 1.50428 1.55125 1.32463 1.19969 0.83767 0.87221 0.91127 0.93782 1.21372 1.27148 0.98157 1.11625 0.91375 1.25095 0.95069 0.97982 0.94372 1.69873 1.29729 1.36724 1.13322 0.86529 0.78248 0.83973 0.78988 1.20158 1.20885 1.19595 1.21882 1.00392 0.87651 1.04123 1.24929 0.74251 0.92301 0.78407 1.90518 1.56312 1.49676 1.43390 1.86583 1.65956 1.34033 1.41884 1.22834 0.97520 0.82782 0.98283 1.21777 1.00825 1.02089 0.96069 0.93743 0.92267 0.93082 0.92816 0.92867 0.88961 0.90872 0.91308 0.91977 0.91633 0.91669 0.89983 0.91430 0.92342 0.84310 0.88105 0.91928 0.91786 0.90896 0.91627 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.76 16 2 C -0.11 -1.67 5.79 -26.73 -0.15 -1.82 16 3 C -0.14 -2.42 3.38 -26.73 -0.09 -2.51 16 4 C -0.07 -1.18 2.92 -89.50 -0.26 -1.44 16 5 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 6 C -0.12 -1.57 5.55 -25.07 -0.14 -1.71 16 7 C -0.12 -1.58 6.91 -24.74 -0.17 -1.75 16 8 C -0.11 -1.86 6.32 -25.07 -0.16 -2.02 16 9 C -0.09 -1.65 3.38 -90.65 -0.31 -1.96 16 10 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 11 C 0.48 11.18 4.73 36.01 0.17 11.35 16 12 O -0.53 -13.52 13.81 -18.75 -0.26 -13.78 16 13 O -0.33 -8.45 8.53 -44.47 -0.38 -8.82 16 14 C 0.23 5.91 1.64 -27.88 -0.05 5.87 16 15 H 0.04 1.18 6.97 -51.93 -0.36 0.82 16 16 C -0.55 -14.71 8.91 -34.44 -0.31 -15.02 16 17 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 18 C 0.08 2.12 5.25 -17.82 -0.09 2.03 16 19 N -0.86 -22.65 10.93 55.43 0.61 -22.04 16 20 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 C -0.10 -2.32 5.23 -27.88 -0.15 -2.47 16 25 C 0.46 9.52 7.84 36.01 0.28 9.80 16 26 O -0.51 -11.28 12.83 -23.94 -0.31 -11.58 16 27 O -0.37 -6.64 10.22 -39.26 -0.40 -7.04 16 28 C 0.06 0.86 6.19 37.15 0.23 1.09 16 29 C -0.15 -1.61 10.29 37.15 0.38 -1.23 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.05 0.70 7.52 -51.93 -0.39 0.31 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.93 4.71 -51.93 -0.24 1.69 16 36 H 0.07 1.47 6.64 -51.93 -0.34 1.12 16 37 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 1.50 7.11 -51.92 -0.37 1.14 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 44 H 0.14 3.36 6.22 -51.93 -0.32 3.03 16 45 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 46 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 47 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 50 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 394.74 15.07 5.95 5.95 Total: -1.00 -29.52 394.74 -9.00 -38.52 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.75 Total: 7.09 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.44 Total: -3.55 kcal Atomic # 7 Polarization: -22.65 SS G_CDS: 0.61 Total: -22.04 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.35 Total: -41.23 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.52 -9.00 -38.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.465 kcal (2) G-P(sol) polarization free energy of solvation -29.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds