Wall clock time and date at job start Tue Mar 31 2020 15:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.52996 * 109.47211 * 180.02562 * 3 2 1 5 5 H 1.09002 * 110.05673 * 306.82016 * 4 3 2 6 6 C 1.54270 * 110.03568 * 68.23628 * 4 3 2 7 7 C 1.54881 * 104.19776 * 142.89629 * 6 4 3 8 8 C 1.54895 * 102.74812 * 322.06102 * 7 6 4 9 9 C 1.53875 * 110.03412 * 185.40492 * 4 3 2 10 10 H 1.08996 * 110.03466 * 121.42452 * 9 4 3 11 11 C 1.50703 * 110.02975 * 359.97438 * 9 4 3 12 12 O 1.20826 * 120.00267 * 284.67833 * 11 9 4 13 13 O 1.34235 * 119.99886 * 104.67781 * 11 9 4 14 14 C 1.45195 * 116.99990 * 179.97438 * 13 11 9 15 15 H 1.08999 * 109.47420 * 30.00033 * 14 13 11 16 16 C 1.50699 * 109.47025 * 269.99927 * 14 13 11 17 17 H 1.08001 * 119.99843 * 120.00216 * 16 14 13 18 18 C 1.37878 * 120.00092 * 299.99857 * 16 14 13 19 19 N 1.31518 * 119.99867 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 119.99820 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47150 * 90.00192 * 20 18 16 22 22 H 1.48507 * 109.46842 * 209.99940 * 20 18 16 23 23 H 1.48498 * 109.47505 * 329.99974 * 20 18 16 24 24 C 1.53004 * 109.47193 * 150.00050 * 14 13 11 25 25 C 1.50699 * 109.46886 * 295.00003 * 24 14 13 26 26 O 1.20825 * 120.00193 * 359.97438 * 25 24 14 27 27 O 1.34230 * 120.00086 * 179.97438 * 25 24 14 28 28 C 1.45204 * 117.00368 * 179.97438 * 27 25 24 29 29 C 1.52992 * 109.47369 * 180.02562 * 28 27 25 30 30 H 1.08998 * 109.47620 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47110 * 300.00614 * 1 2 3 32 32 H 1.09000 * 109.46634 * 60.00151 * 1 2 3 33 33 H 1.09000 * 109.47110 * 239.99386 * 2 1 3 34 34 H 1.09000 * 109.46634 * 119.99849 * 2 1 3 35 35 H 1.08999 * 109.47118 * 59.99244 * 3 2 1 36 36 H 1.09002 * 109.46661 * 299.99807 * 3 2 1 37 37 H 1.09003 * 110.48469 * 24.21442 * 6 4 3 38 38 H 1.09003 * 110.59769 * 261.63130 * 6 4 3 39 39 H 1.09000 * 110.75797 * 203.74823 * 7 6 4 40 40 H 1.09003 * 110.75947 * 80.36938 * 7 6 4 41 41 H 1.09008 * 110.48302 * 279.26409 * 8 7 6 42 42 H 1.09000 * 110.60183 * 156.67785 * 8 7 6 43 43 H 0.96996 * 119.99362 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47064 * 54.99540 * 24 14 13 45 45 H 1.08997 * 109.47440 * 175.00324 * 24 14 13 46 46 H 1.09003 * 109.46936 * 300.00903 * 28 27 25 47 47 H 1.09005 * 109.46453 * 60.00080 * 28 27 25 48 48 H 1.08995 * 109.47387 * 180.02562 * 29 28 27 49 49 H 1.09011 * 109.47134 * 300.00248 * 29 28 27 50 50 H 1.08998 * 109.47147 * 59.99943 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9442 0.8286 0.8188 6 6 4.0980 0.9052 -1.3470 7 6 5.3531 1.7662 -1.6336 8 6 4.9272 3.1687 -1.1328 9 6 4.0973 2.8816 0.1355 10 1 4.7272 2.9663 1.0210 11 6 2.9440 3.8473 0.2269 12 8 2.3110 4.1278 -0.7633 13 8 2.6200 4.3959 1.4084 14 6 1.4983 5.3178 1.4216 15 1 0.7883 5.0374 0.6437 16 6 1.9955 6.7175 1.1672 17 1 1.6365 7.2709 0.3121 18 6 2.9086 7.2916 2.0261 19 7 3.3461 6.6174 3.0672 20 14 3.5243 9.0268 1.7110 21 1 2.6384 9.9991 2.4003 22 1 4.9085 9.1630 2.2314 23 1 3.5155 9.2978 0.2510 24 6 0.8083 5.2619 2.7861 25 6 0.2042 3.8961 2.9878 26 8 0.3139 3.0540 2.1283 27 8 -0.4557 3.6150 4.1224 28 6 -1.0119 2.2796 4.2480 29 6 -1.7222 2.1477 5.5966 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9562 -0.8900 37 1 3.3535 1.0431 -2.1311 38 1 4.3689 -0.1471 -1.2603 39 1 5.5715 1.7873 -2.7013 40 1 6.2107 1.3989 -1.0699 41 1 4.3165 3.6722 -1.8823 42 1 5.8023 3.7706 -0.8879 43 1 3.9888 7.0212 3.6711 44 1 1.5393 5.4554 3.5711 45 1 0.0226 6.0162 2.8271 46 1 -1.7261 2.1063 3.4430 47 1 -0.2094 1.5445 4.1862 48 1 -2.1394 1.1452 5.6911 49 1 -1.0082 2.3212 6.4019 50 1 -2.5247 2.8828 5.6580 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870617745.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:29 Heat of formation + Delta-G solvation = -226.124311 kcal Electronic energy + Delta-G solvation = -30526.288047 eV Core-core repulsion = 26516.765171 eV Total energy + Delta-G solvation = -4009.522877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67327 -41.17647 -39.08804 -37.66803 -36.86757 -35.32714 -35.02963 -32.90027 -32.04770 -30.76464 -30.19721 -28.17731 -26.12246 -24.90154 -23.77623 -22.81609 -22.57071 -21.50052 -21.36784 -20.09305 -19.03340 -18.49253 -17.96770 -17.54696 -17.28324 -16.95280 -16.66795 -16.40767 -16.05176 -15.76432 -15.33926 -15.09725 -14.62704 -14.49857 -14.25943 -13.83481 -13.72037 -13.69997 -13.46658 -13.42275 -12.98651 -12.95925 -12.83368 -12.77867 -12.64218 -12.56544 -12.43925 -12.27069 -12.05246 -11.97383 -11.75544 -11.70311 -11.53090 -11.49764 -11.45831 -11.36526 -11.33450 -11.18145 -10.88334 -10.73259 -10.62279 -8.24414 -6.50158 1.33133 1.38806 1.41331 1.51318 1.72193 1.83806 2.32262 2.36648 3.08564 3.53695 3.63947 3.77005 3.95156 4.01739 4.11733 4.12901 4.18358 4.32459 4.35430 4.36787 4.47422 4.49098 4.51105 4.57361 4.58981 4.61058 4.73041 4.78249 4.88029 4.91500 4.93370 4.97311 5.02999 5.06305 5.09063 5.13505 5.20940 5.22357 5.24372 5.31433 5.35335 5.43575 5.45689 5.54063 5.63340 5.67524 5.95822 6.21393 6.58451 6.93718 7.24316 7.40715 8.77707 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.007672 B = 0.006654 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.960735 B = 4207.079896 C = 7271.764393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.131 4.131 4 C -0.071 4.071 5 H 0.094 0.906 6 C -0.110 4.110 7 C -0.109 4.109 8 C -0.115 4.115 9 C -0.091 4.091 10 H 0.094 0.906 11 C 0.468 3.532 12 O -0.563 6.563 13 O -0.345 6.345 14 C 0.235 3.765 15 H 0.014 0.986 16 C -0.577 4.577 17 H 0.050 0.950 18 C 0.049 3.951 19 N -0.875 5.875 20 Si 0.956 3.044 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.281 1.281 24 C -0.096 4.096 25 C 0.461 3.539 26 O -0.526 6.526 27 O -0.366 6.366 28 C 0.051 3.949 29 C -0.142 4.142 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.272 0.728 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.103 0.897 49 H 0.067 0.933 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 -13.156 1.179 13.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.169 4.169 4 C -0.090 4.090 5 H 0.113 0.887 6 C -0.147 4.147 7 C -0.146 4.146 8 C -0.153 4.153 9 C -0.111 4.111 10 H 0.112 0.888 11 C 0.314 3.686 12 O -0.456 6.456 13 O -0.260 6.260 14 C 0.182 3.818 15 H 0.032 0.968 16 C -0.613 4.613 17 H 0.068 0.932 18 C -0.157 4.157 19 N -0.510 5.510 20 Si 0.781 3.219 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.206 1.206 24 C -0.133 4.133 25 C 0.306 3.694 26 O -0.415 6.415 27 O -0.284 6.284 28 C -0.022 4.022 29 C -0.199 4.199 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.144 0.856 45 H 0.130 0.870 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.122 0.878 49 H 0.086 0.914 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.837 -13.327 0.885 13.383 hybrid contribution -0.094 1.431 -0.271 1.459 sum -0.932 -11.897 0.614 11.949 Atomic orbital electron populations 1.21703 0.96348 1.01626 1.00681 1.21416 0.95626 0.95035 1.02434 1.21995 0.94996 0.98352 1.01529 1.21754 0.95070 0.91798 1.00362 0.88745 1.22437 0.97050 1.00409 0.94818 1.22465 0.98000 0.92176 1.01960 1.22409 0.98454 0.99882 0.94525 1.21928 0.93277 0.94052 1.01812 0.88802 1.23742 0.84686 0.78599 0.81587 1.90459 1.54177 1.62183 1.38768 1.86595 1.50386 1.55349 1.33719 1.19817 0.83393 0.86853 0.91740 0.96798 1.21444 1.28854 0.99091 1.11954 0.93164 1.25683 0.94684 1.01387 0.93904 1.69952 1.29590 1.37969 1.13480 0.85599 0.78245 0.79818 0.78269 1.18605 1.19893 1.20577 1.21624 1.00360 0.89455 1.01890 1.24439 0.74467 0.91456 0.79051 1.90535 1.56977 1.49889 1.44114 1.86544 1.65358 1.36404 1.40055 1.23244 0.97628 0.80589 1.00761 1.21805 1.00559 1.04095 0.93431 0.90801 0.94454 0.94272 0.90533 0.91460 0.92482 0.94229 0.92464 0.88535 0.89781 0.89177 0.92743 0.90691 0.91806 0.85629 0.86991 0.91783 0.91984 0.87837 0.91439 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.12 9.91 71.98 0.71 -3.41 16 2 C -0.11 -2.99 5.79 30.59 0.18 -2.82 16 3 C -0.13 -4.78 3.38 30.59 0.10 -4.67 16 4 C -0.07 -2.22 2.92 -10.07 -0.03 -2.25 16 5 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 6 C -0.11 -2.67 5.55 31.67 0.18 -2.49 16 7 C -0.11 -2.50 6.91 31.88 0.22 -2.28 16 8 C -0.12 -3.74 6.32 31.67 0.20 -3.54 16 9 C -0.09 -3.44 3.38 -10.82 -0.04 -3.48 16 10 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 11 C 0.47 23.13 4.73 71.24 0.34 23.47 16 12 O -0.56 -30.65 13.81 21.96 0.30 -30.35 16 13 O -0.35 -18.56 8.53 -46.50 -0.40 -18.96 16 14 C 0.24 12.73 1.64 29.85 0.05 12.78 16 15 H 0.01 0.81 6.97 -2.39 -0.02 0.80 16 16 C -0.58 -32.62 8.91 25.60 0.23 -32.39 16 17 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 18 C 0.05 2.60 5.25 84.65 0.44 3.05 16 19 N -0.87 -46.69 10.93 21.45 0.23 -46.45 16 20 Si 0.96 42.07 29.54 68.60 2.03 44.09 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.10 -4.52 5.23 29.85 0.16 -4.37 16 25 C 0.46 20.00 7.84 71.24 0.56 20.56 16 26 O -0.53 -24.42 12.83 26.93 0.35 -24.08 16 27 O -0.37 -13.40 10.22 -51.42 -0.53 -13.92 16 28 C 0.05 1.44 6.19 71.98 0.45 1.89 16 29 C -0.14 -2.75 10.29 71.98 0.74 -2.01 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.79 7.52 -2.39 -0.02 1.77 16 34 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 2.49 4.71 -2.39 -0.01 2.48 16 36 H 0.04 1.67 6.64 -2.39 -0.02 1.66 16 37 H 0.06 1.54 7.75 -2.39 -0.02 1.52 16 38 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.05 2.06 7.11 -2.38 -0.02 2.05 16 42 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 44 H 0.13 6.31 6.22 -2.39 -0.01 6.29 16 45 H 0.11 4.88 8.14 -2.39 -0.02 4.86 16 46 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 47 H 0.06 1.77 8.13 -2.38 -0.02 1.75 16 48 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -68.50 394.74 7.38 -61.13 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.90 Total: 30.51 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.48 Total: -1.97 kcal Atomic # 7 Polarization: -46.69 SS G_CDS: 0.23 Total: -46.45 kcal Atomic # 8 Polarization: -87.03 SS G_CDS: -0.27 Total: -87.30 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.09 kcal Total: -68.50 7.38 -61.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617745.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.997 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds