Wall clock time and date at job start Tue Mar 31 2020 15:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47010 * 2 1 4 4 C 1.53005 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.82011 * 51.66651 * 4 3 2 6 6 C 1.54892 * 110.75577 * 288.32410 * 4 3 2 7 7 C 1.54269 * 104.19411 * 203.74544 * 6 4 3 8 8 C 1.53870 * 106.59982 * 23.61136 * 7 6 4 9 9 C 1.54267 * 106.60089 * 0.02562 * 8 7 6 10 10 H 1.08997 * 110.49192 * 95.19359 * 9 8 7 11 11 C 1.50696 * 110.48656 * 217.71383 * 9 8 7 12 12 O 1.20828 * 120.00548 * 118.54309 * 11 9 8 13 13 O 1.34234 * 120.00093 * 298.53775 * 11 9 8 14 14 C 1.45193 * 117.00396 * 180.02562 * 13 11 9 15 15 H 1.09004 * 109.47421 * 30.00260 * 14 13 11 16 16 C 1.50700 * 109.47231 * 270.00493 * 14 13 11 17 17 H 1.07996 * 119.99857 * 335.42005 * 16 14 13 18 18 C 1.37875 * 120.00109 * 155.42206 * 16 14 13 19 19 N 1.31513 * 120.00192 * 174.65944 * 18 16 14 20 20 Si 1.86808 * 119.99880 * 354.38800 * 18 16 14 21 21 H 1.48495 * 109.47015 * 94.00638 * 20 18 16 22 22 H 1.48500 * 109.47029 * 214.00372 * 20 18 16 23 23 H 1.48497 * 109.46831 * 333.99966 * 20 18 16 24 24 C 1.52999 * 109.47346 * 150.00285 * 14 13 11 25 25 C 1.50701 * 109.47136 * 294.50621 * 24 14 13 26 26 O 1.20825 * 119.99926 * 359.97438 * 25 24 14 27 27 O 1.34224 * 120.00443 * 179.97438 * 25 24 14 28 28 C 1.45196 * 117.00302 * 179.97438 * 27 25 24 29 29 C 1.53006 * 109.47168 * 180.02562 * 28 27 25 30 30 H 1.08995 * 109.46889 * 300.00184 * 1 2 3 31 31 H 1.09000 * 109.47041 * 60.00324 * 1 2 3 32 32 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47502 * 239.99371 * 2 1 3 34 34 H 1.09009 * 109.46964 * 119.99904 * 2 1 3 35 35 H 1.08995 * 109.47445 * 60.00156 * 3 2 1 36 36 H 1.09000 * 109.46954 * 299.99729 * 3 2 1 37 37 H 1.09002 * 110.48424 * 85.06905 * 6 4 3 38 38 H 1.08993 * 110.59739 * 322.48088 * 6 4 3 39 39 H 1.08998 * 110.03308 * 264.32587 * 7 6 4 40 40 H 1.09002 * 110.07242 * 142.91727 * 7 6 4 41 41 H 1.08993 * 110.03699 * 240.71637 * 8 7 6 42 42 H 1.08997 * 110.03427 * 119.28241 * 8 7 6 43 43 H 0.97001 * 120.00424 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47112 * 54.50294 * 24 14 13 45 45 H 1.08992 * 109.47318 * 174.50770 * 24 14 13 46 46 H 1.08999 * 109.47422 * 300.00280 * 28 27 25 47 47 H 1.08995 * 109.47018 * 60.00604 * 28 27 25 48 48 H 1.08995 * 109.47173 * 180.02562 * 29 28 27 49 49 H 1.08999 * 109.47000 * 300.00321 * 29 28 27 50 50 H 1.09002 * 109.47298 * 59.99804 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9578 0.8104 -0.7982 6 6 4.1184 0.9872 1.3759 7 6 5.5326 1.6002 1.4410 8 6 5.5330 2.8069 0.4863 9 6 4.1189 2.8857 -0.1251 10 1 3.4981 3.5830 0.4375 11 6 4.1925 3.2970 -1.5730 12 8 3.7816 2.5549 -2.4336 13 8 4.7144 4.4878 -1.9068 14 6 4.7527 4.8179 -3.3202 15 1 3.9205 4.3321 -3.8296 16 6 6.0529 4.3390 -3.9128 17 1 6.9189 4.2089 -3.2809 18 6 6.1368 4.0669 -5.2619 19 7 7.2952 3.7505 -5.7981 20 14 4.6036 4.1401 -6.3266 21 1 4.4938 5.4859 -6.9444 22 1 4.6925 3.1113 -7.3938 23 1 3.4058 3.8811 -5.4879 24 6 4.6413 6.3341 -3.4930 25 6 3.2856 6.7949 -3.0234 26 8 2.4899 5.9929 -2.5949 27 8 2.9618 8.0963 -3.0811 28 6 1.6388 8.4679 -2.6124 29 6 1.4532 9.9799 -2.7552 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 4.1714 -0.1004 1.4244 38 1 3.4972 1.3744 2.1835 39 1 6.2722 0.8679 1.1174 40 1 5.7518 1.9279 2.4572 41 1 6.2727 2.6603 -0.3006 42 1 5.7516 3.7204 1.0393 43 1 7.3542 3.5587 -6.7471 44 1 5.4160 6.8248 -2.9039 45 1 4.7678 6.5901 -4.5449 46 1 0.8846 7.9519 -3.2064 47 1 1.5320 8.1858 -1.5650 48 1 0.4603 10.2590 -2.4029 49 1 2.2075 10.4963 -2.1614 50 1 1.5600 10.2618 -3.8027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870617748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:37 Heat of formation + Delta-G solvation = -213.986738 kcal Electronic energy + Delta-G solvation = -29472.664863 eV Core-core repulsion = 25463.668311 eV Total energy + Delta-G solvation = -4008.996552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.17113 -39.73306 -37.90478 -36.35415 -35.34571 -34.41459 -33.12975 -31.82653 -30.95719 -29.65728 -29.14080 -26.52084 -25.13292 -23.38120 -22.61235 -21.46991 -21.16519 -20.08013 -19.76895 -19.11683 -17.70534 -17.09049 -16.61344 -16.35747 -16.02377 -15.55814 -15.33125 -14.95961 -14.61166 -14.15125 -13.99186 -13.86183 -13.64277 -13.20314 -12.88135 -12.82109 -12.68161 -12.57401 -12.39768 -12.29411 -11.92457 -11.81118 -11.64860 -11.47645 -11.35480 -11.29285 -11.11151 -10.97492 -10.81179 -10.74820 -10.48187 -10.37311 -10.33730 -10.25428 -10.21169 -9.97904 -9.86955 -9.78558 -9.33465 -8.95305 -8.76524 -6.29440 -4.34629 2.71250 3.03444 3.16475 3.24362 3.28278 3.37839 3.68073 4.25234 4.57444 4.71499 4.89672 4.94625 4.96830 5.02428 5.11504 5.15999 5.19069 5.28374 5.29923 5.50581 5.55265 5.59776 5.62809 5.67738 5.71691 5.75380 5.77616 5.78830 5.91018 5.92454 5.96168 6.00120 6.00807 6.03256 6.08843 6.15665 6.19693 6.28826 6.38607 6.45700 6.50357 6.58370 6.64542 6.73916 6.87283 7.32978 7.66840 8.20471 8.27179 8.72401 8.87727 9.31113 10.81856 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008452 B = 0.004615 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3312.144692 B = 6066.343868 C = 7488.600767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.111 4.111 4 C -0.075 4.075 5 H 0.091 0.909 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.113 4.113 9 C -0.083 4.083 10 H 0.101 0.899 11 C 0.473 3.527 12 O -0.507 6.507 13 O -0.354 6.354 14 C 0.194 3.806 15 H 0.064 0.936 16 C -0.534 4.534 17 H 0.086 0.914 18 C 0.089 3.911 19 N -0.879 5.879 20 Si 0.853 3.147 21 H -0.271 1.271 22 H -0.277 1.277 23 H -0.251 1.251 24 C -0.108 4.108 25 C 0.455 3.545 26 O -0.508 6.508 27 O -0.365 6.365 28 C 0.058 3.942 29 C -0.151 4.151 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.270 0.730 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.695 2.423 12.613 16.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.094 4.094 5 H 0.109 0.891 6 C -0.155 4.155 7 C -0.161 4.161 8 C -0.150 4.150 9 C -0.102 4.102 10 H 0.119 0.881 11 C 0.315 3.685 12 O -0.395 6.395 13 O -0.270 6.270 14 C 0.140 3.860 15 H 0.082 0.918 16 C -0.571 4.571 17 H 0.104 0.896 18 C -0.116 4.116 19 N -0.515 5.515 20 Si 0.679 3.321 21 H -0.196 1.196 22 H -0.203 1.203 23 H -0.175 1.175 24 C -0.146 4.146 25 C 0.299 3.701 26 O -0.395 6.395 27 O -0.283 6.283 28 C -0.016 4.016 29 C -0.208 4.208 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.130 0.870 45 H 0.130 0.870 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.964 1.950 12.274 15.929 hybrid contribution -0.840 0.101 -0.841 1.193 sum -10.804 2.051 11.433 15.863 Atomic orbital electron populations 1.21774 0.96301 1.01149 1.01701 1.21500 0.95416 0.97084 1.01898 1.21597 0.94325 0.96815 1.02099 1.22079 0.95256 0.94169 0.97859 0.89091 1.22432 0.96017 1.00291 0.96800 1.22132 0.97341 0.97395 0.99230 1.22056 0.95275 0.98708 0.98987 1.21902 0.99167 0.98336 0.90832 0.88094 1.22945 0.74081 0.80241 0.91257 1.90585 1.44763 1.52585 1.51568 1.86278 1.73236 1.35725 1.31784 1.20724 0.99873 0.88920 0.76466 0.91812 1.21067 0.95539 1.46161 0.94313 0.89622 1.24853 0.95833 0.93422 0.97541 1.69862 1.23824 1.44929 1.12908 0.87146 0.85161 0.78771 0.81040 1.19623 1.20288 1.17537 1.22246 0.89563 0.99043 1.03756 1.24683 0.90966 0.79621 0.74856 1.90617 1.51703 1.54521 1.42623 1.86569 1.35403 1.28797 1.77506 1.22917 0.82589 0.96287 0.99804 1.21786 1.02236 0.93465 1.03284 0.93034 0.92734 0.93106 0.91868 0.92235 0.92326 0.91342 0.91516 0.91588 0.91631 0.91796 0.90609 0.90908 0.92028 0.87029 0.86967 0.91680 0.91560 0.90670 0.91548 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.44 5.83 -26.73 -0.16 -1.60 16 3 C -0.11 -1.52 4.71 -26.73 -0.13 -1.64 16 4 C -0.08 -1.10 1.88 -88.61 -0.17 -1.26 16 5 H 0.09 1.54 7.53 -51.93 -0.39 1.15 16 6 C -0.12 -1.34 5.69 -25.07 -0.14 -1.48 16 7 C -0.12 -1.44 6.80 -25.61 -0.17 -1.61 16 8 C -0.11 -1.64 6.34 -25.61 -0.16 -1.80 16 9 C -0.08 -1.37 2.81 -90.10 -0.25 -1.62 16 10 H 0.10 1.52 8.05 -51.93 -0.42 1.10 16 11 C 0.47 10.44 7.08 36.00 0.26 10.70 16 12 O -0.51 -12.79 14.80 -18.75 -0.28 -13.07 16 13 O -0.35 -8.26 9.12 -44.33 -0.40 -8.66 16 14 C 0.19 4.81 1.06 -27.88 -0.03 4.78 16 15 H 0.06 1.74 4.13 -51.93 -0.21 1.53 16 16 C -0.53 -14.84 9.21 -34.44 -0.32 -15.16 16 17 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 18 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 19 N -0.88 -25.95 13.96 55.43 0.77 -25.17 16 20 Si 0.85 21.25 26.59 -169.99 -4.52 16.73 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.25 -6.45 5.94 56.52 0.34 -6.12 16 24 C -0.11 -2.26 5.34 -27.88 -0.15 -2.41 16 25 C 0.46 9.08 7.84 36.01 0.28 9.36 16 26 O -0.51 -11.30 15.18 -23.82 -0.36 -11.66 16 27 O -0.36 -6.18 10.22 -39.24 -0.40 -6.58 16 28 C 0.06 0.78 6.19 37.16 0.23 1.01 16 29 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.62 7.65 -51.92 -0.40 0.22 16 35 H 0.06 0.71 7.99 -51.93 -0.41 0.30 16 36 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 37 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 38 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.27 7.83 -51.93 -0.41 0.87 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.11 2.11 8.14 -51.93 -0.42 1.69 16 45 H 0.11 2.27 7.10 -51.93 -0.37 1.90 16 46 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 47 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 402.94 15.07 6.07 6.07 Total: -1.00 -32.67 402.94 -8.35 -41.02 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -8.98 Total: 3.99 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -0.26 Total: -2.67 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.77 Total: -25.17 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.44 Total: -39.97 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.52 Total: 16.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.67 -8.35 -41.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.968 kcal (2) G-P(sol) polarization free energy of solvation -32.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds