Wall clock time and date at job start Tue Mar 31 2020 15:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47010 * 2 1 4 4 C 1.53005 * 109.46709 * 179.97438 * 3 2 1 5 5 H 1.08995 * 110.82011 * 51.66651 * 4 3 2 6 6 C 1.54892 * 110.75577 * 288.32410 * 4 3 2 7 7 C 1.54269 * 104.19411 * 203.74544 * 6 4 3 8 8 C 1.53870 * 106.59982 * 23.61136 * 7 6 4 9 9 C 1.54267 * 106.60089 * 0.02562 * 8 7 6 10 10 H 1.08997 * 110.49192 * 95.19359 * 9 8 7 11 11 C 1.50696 * 110.48656 * 217.71383 * 9 8 7 12 12 O 1.20828 * 120.00548 * 118.54309 * 11 9 8 13 13 O 1.34234 * 120.00093 * 298.53775 * 11 9 8 14 14 C 1.45193 * 117.00396 * 180.02562 * 13 11 9 15 15 H 1.09004 * 109.47421 * 30.00260 * 14 13 11 16 16 C 1.50700 * 109.47231 * 270.00493 * 14 13 11 17 17 H 1.07996 * 119.99857 * 335.42005 * 16 14 13 18 18 C 1.37875 * 120.00109 * 155.42206 * 16 14 13 19 19 N 1.31513 * 120.00192 * 174.65944 * 18 16 14 20 20 Si 1.86808 * 119.99880 * 354.38800 * 18 16 14 21 21 H 1.48495 * 109.47015 * 94.00638 * 20 18 16 22 22 H 1.48500 * 109.47029 * 214.00372 * 20 18 16 23 23 H 1.48497 * 109.46831 * 333.99966 * 20 18 16 24 24 C 1.52999 * 109.47346 * 150.00285 * 14 13 11 25 25 C 1.50701 * 109.47136 * 294.50621 * 24 14 13 26 26 O 1.20825 * 119.99926 * 359.97438 * 25 24 14 27 27 O 1.34224 * 120.00443 * 179.97438 * 25 24 14 28 28 C 1.45196 * 117.00302 * 179.97438 * 27 25 24 29 29 C 1.53006 * 109.47168 * 180.02562 * 28 27 25 30 30 H 1.08995 * 109.46889 * 300.00184 * 1 2 3 31 31 H 1.09000 * 109.47041 * 60.00324 * 1 2 3 32 32 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47502 * 239.99371 * 2 1 3 34 34 H 1.09009 * 109.46964 * 119.99904 * 2 1 3 35 35 H 1.08995 * 109.47445 * 60.00156 * 3 2 1 36 36 H 1.09000 * 109.46954 * 299.99729 * 3 2 1 37 37 H 1.09002 * 110.48424 * 85.06905 * 6 4 3 38 38 H 1.08993 * 110.59739 * 322.48088 * 6 4 3 39 39 H 1.08998 * 110.03308 * 264.32587 * 7 6 4 40 40 H 1.09002 * 110.07242 * 142.91727 * 7 6 4 41 41 H 1.08993 * 110.03699 * 240.71637 * 8 7 6 42 42 H 1.08997 * 110.03427 * 119.28241 * 8 7 6 43 43 H 0.97001 * 120.00424 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.47112 * 54.50294 * 24 14 13 45 45 H 1.08992 * 109.47318 * 174.50770 * 24 14 13 46 46 H 1.08999 * 109.47422 * 300.00280 * 28 27 25 47 47 H 1.08995 * 109.47018 * 60.00604 * 28 27 25 48 48 H 1.08995 * 109.47173 * 180.02562 * 29 28 27 49 49 H 1.08999 * 109.47000 * 300.00321 * 29 28 27 50 50 H 1.09002 * 109.47298 * 59.99804 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9578 0.8104 -0.7982 6 6 4.1184 0.9872 1.3759 7 6 5.5326 1.6002 1.4410 8 6 5.5330 2.8069 0.4863 9 6 4.1189 2.8857 -0.1251 10 1 3.4981 3.5830 0.4375 11 6 4.1925 3.2970 -1.5730 12 8 3.7816 2.5549 -2.4336 13 8 4.7144 4.4878 -1.9068 14 6 4.7527 4.8179 -3.3202 15 1 3.9205 4.3321 -3.8296 16 6 6.0529 4.3390 -3.9128 17 1 6.9189 4.2089 -3.2809 18 6 6.1368 4.0669 -5.2619 19 7 7.2952 3.7505 -5.7981 20 14 4.6036 4.1401 -6.3266 21 1 4.4938 5.4859 -6.9444 22 1 4.6925 3.1113 -7.3938 23 1 3.4058 3.8811 -5.4879 24 6 4.6413 6.3341 -3.4930 25 6 3.2856 6.7949 -3.0234 26 8 2.4899 5.9929 -2.5949 27 8 2.9618 8.0963 -3.0811 28 6 1.6388 8.4679 -2.6124 29 6 1.4532 9.9799 -2.7552 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 4.1714 -0.1004 1.4244 38 1 3.4972 1.3744 2.1835 39 1 6.2722 0.8679 1.1174 40 1 5.7518 1.9279 2.4572 41 1 6.2727 2.6603 -0.3006 42 1 5.7516 3.7204 1.0393 43 1 7.3542 3.5587 -6.7471 44 1 5.4160 6.8248 -2.9039 45 1 4.7678 6.5901 -4.5449 46 1 0.8846 7.9519 -3.2064 47 1 1.5320 8.1858 -1.5650 48 1 0.4603 10.2590 -2.4029 49 1 2.2075 10.4963 -2.1614 50 1 1.5600 10.2618 -3.8027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870617748.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:36 Heat of formation + Delta-G solvation = -231.015575 kcal Electronic energy + Delta-G solvation = -29473.403289 eV Core-core repulsion = 25463.668311 eV Total energy + Delta-G solvation = -4009.734978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79664 -41.28671 -39.28638 -37.87270 -37.15899 -35.46900 -35.16972 -33.32568 -32.40073 -30.71912 -30.34774 -28.45238 -26.20783 -24.88137 -23.91460 -22.78056 -22.36983 -21.61226 -20.97978 -20.65317 -19.65615 -18.70012 -18.40617 -17.86430 -17.59309 -17.04223 -16.80780 -16.30352 -15.97081 -15.71187 -15.47779 -15.19499 -14.76397 -14.68387 -14.57983 -14.04621 -13.95258 -13.82038 -13.62285 -13.53398 -13.37851 -13.26038 -13.08219 -12.92594 -12.74259 -12.60469 -12.51130 -12.27759 -12.07622 -12.02852 -11.80315 -11.77977 -11.64599 -11.60114 -11.54581 -11.41542 -11.32601 -11.27485 -11.08042 -10.97677 -10.92871 -8.50542 -6.59851 1.11759 1.14376 1.23855 1.34910 1.48192 1.63811 2.00723 2.15587 2.85422 3.39569 3.58355 3.67171 3.77899 3.98041 4.04779 4.08367 4.12304 4.17712 4.20612 4.29084 4.32618 4.35405 4.41086 4.49650 4.53776 4.57396 4.66353 4.74812 4.76628 4.82165 4.91580 4.93133 4.93878 4.96170 5.03965 5.09876 5.11996 5.20127 5.20467 5.22550 5.27050 5.33997 5.41172 5.44658 5.47704 5.54563 5.78873 6.08804 6.46576 6.70332 6.96505 7.13851 8.64886 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008452 B = 0.004615 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3312.144692 B = 6066.343868 C = 7488.600767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.077 4.077 5 H 0.057 0.943 6 C -0.106 4.106 7 C -0.117 4.117 8 C -0.112 4.112 9 C -0.081 4.081 10 H 0.123 0.877 11 C 0.460 3.540 12 O -0.548 6.548 13 O -0.357 6.357 14 C 0.198 3.802 15 H 0.038 0.962 16 C -0.539 4.539 17 H 0.050 0.950 18 C 0.046 3.954 19 N -0.918 5.918 20 Si 0.905 3.095 21 H -0.235 1.235 22 H -0.273 1.273 23 H -0.269 1.269 24 C -0.107 4.107 25 C 0.465 3.535 26 O -0.536 6.536 27 O -0.359 6.359 28 C 0.047 3.953 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.037 0.963 32 H 0.064 0.936 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.275 0.725 44 H 0.131 0.869 45 H 0.121 0.879 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.071 0.929 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.383 3.579 14.863 19.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.095 4.095 5 H 0.075 0.925 6 C -0.143 4.143 7 C -0.155 4.155 8 C -0.150 4.150 9 C -0.100 4.100 10 H 0.140 0.860 11 C 0.305 3.695 12 O -0.438 6.438 13 O -0.273 6.273 14 C 0.143 3.857 15 H 0.056 0.944 16 C -0.577 4.577 17 H 0.068 0.932 18 C -0.156 4.156 19 N -0.556 5.556 20 Si 0.728 3.272 21 H -0.158 1.158 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.144 4.144 25 C 0.309 3.691 26 O -0.425 6.425 27 O -0.276 6.276 28 C -0.026 4.026 29 C -0.199 4.199 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.059 0.941 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.139 0.861 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.122 0.878 49 H 0.090 0.910 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.644 3.149 14.529 18.884 hybrid contribution -0.321 -0.234 -1.491 1.543 sum -11.964 2.915 13.039 17.935 Atomic orbital electron populations 1.21766 0.95282 1.02089 1.01630 1.21486 0.96314 0.95733 1.02100 1.21570 0.93620 0.97988 1.01283 1.22095 0.95922 0.92316 0.99189 0.92491 1.22418 0.95700 1.01363 0.94831 1.22134 0.97683 0.95827 0.99821 1.22094 0.92852 1.01284 0.98736 1.22164 1.01109 0.99888 0.86863 0.85963 1.24259 0.72544 0.79172 0.93515 1.90555 1.46463 1.53405 1.53366 1.86301 1.73571 1.36640 1.30791 1.20499 0.96948 0.91255 0.76975 0.94415 1.21144 0.95680 1.46602 0.94248 0.93206 1.25488 0.98310 0.93104 0.98671 1.69955 1.25625 1.46370 1.13633 0.86340 0.80847 0.80689 0.79296 1.15847 1.19830 1.19478 1.21981 0.91306 0.96288 1.04843 1.24209 0.90109 0.80489 0.74267 1.90613 1.52380 1.55530 1.44026 1.86537 1.37491 1.26484 1.77111 1.23354 0.80516 0.98902 0.99848 1.21819 1.04077 0.90240 1.03806 0.91547 0.94368 0.91681 0.93848 0.89804 0.89915 0.95241 0.89929 0.88970 0.91817 0.88724 0.94082 0.89190 0.91525 0.85129 0.86104 0.91880 0.91259 0.87837 0.90959 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.30 16 2 C -0.12 -2.71 5.83 30.60 0.18 -2.53 16 3 C -0.11 -2.89 4.71 30.60 0.14 -2.74 16 4 C -0.08 -2.22 1.88 -9.49 -0.02 -2.24 16 5 H 0.06 2.03 7.53 -2.39 -0.02 2.01 16 6 C -0.11 -2.09 5.69 31.67 0.18 -1.91 16 7 C -0.12 -2.45 6.80 31.32 0.21 -2.24 16 8 C -0.11 -3.21 6.34 31.32 0.20 -3.01 16 9 C -0.08 -2.69 2.81 -10.45 -0.03 -2.72 16 10 H 0.12 3.52 8.05 -2.39 -0.02 3.50 16 11 C 0.46 21.37 7.08 71.23 0.50 21.88 16 12 O -0.55 -29.51 14.80 21.96 0.32 -29.19 16 13 O -0.36 -17.34 9.12 -46.61 -0.43 -17.77 16 14 C 0.20 10.15 1.06 29.85 0.03 10.18 16 15 H 0.04 2.16 4.13 -2.38 -0.01 2.15 16 16 C -0.54 -31.44 9.21 25.60 0.24 -31.21 16 17 H 0.05 3.19 8.06 -2.91 -0.02 3.16 16 18 C 0.05 2.69 5.47 84.65 0.46 3.15 16 19 N -0.92 -55.88 13.96 21.45 0.30 -55.58 16 20 Si 0.90 44.76 26.59 68.60 1.82 46.58 16 21 H -0.24 -10.23 7.11 99.48 0.71 -9.53 16 22 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 23 H -0.27 -14.11 5.94 99.48 0.59 -13.52 16 24 C -0.11 -4.46 5.34 29.85 0.16 -4.30 16 25 C 0.46 18.34 7.84 71.24 0.56 18.90 16 26 O -0.54 -24.05 15.18 26.81 0.41 -23.64 16 27 O -0.36 -11.62 10.22 -51.36 -0.52 -12.15 16 28 C 0.05 1.18 6.19 71.98 0.45 1.62 16 29 C -0.14 -2.34 10.29 71.98 0.74 -1.60 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.51 7.65 -2.38 -0.02 1.49 16 35 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16 36 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 37 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 38 H 0.09 1.41 7.94 -2.39 -0.02 1.39 16 39 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.04 1.44 7.83 -2.39 -0.02 1.43 16 42 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 43 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 44 H 0.13 4.91 8.14 -2.39 -0.02 4.89 16 45 H 0.12 4.81 7.10 -2.39 -0.02 4.80 16 46 H 0.06 1.61 8.13 -2.39 -0.02 1.59 16 47 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 48 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -76.22 402.94 7.41 -68.81 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.78 Total: 24.00 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 4.72 Total: -1.06 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.30 Total: -55.58 kcal Atomic # 8 Polarization: -82.53 SS G_CDS: -0.22 Total: -82.75 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.82 Total: 46.58 kcal Total: -76.22 7.41 -68.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617748.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.206 kcal (2) G-P(sol) polarization free energy of solvation -76.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds