Wall clock time and date at job start Tue Mar 31 2020 15:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.01710 * 306.39347 * 4 3 2 6 6 C 1.54266 * 110.07174 * 67.80471 * 4 3 2 7 7 C 1.54893 * 104.19465 * 142.92012 * 6 4 3 8 8 C 1.54889 * 102.74889 * 322.05463 * 7 6 4 9 9 C 1.53873 * 110.03237 * 184.99547 * 4 3 2 10 10 H 1.08996 * 110.03223 * 0.02562 * 9 4 3 11 11 C 1.50705 * 110.02730 * 121.38361 * 9 4 3 12 12 O 1.20826 * 120.00060 * 359.97438 * 11 9 4 13 13 O 1.34235 * 119.99729 * 179.97438 * 11 9 4 14 14 C 1.45195 * 116.99923 * 179.97438 * 13 11 9 15 15 H 1.09005 * 109.47139 * 30.00307 * 14 13 11 16 16 C 1.50694 * 109.47519 * 270.00241 * 14 13 11 17 17 H 1.08001 * 120.00331 * 125.41761 * 16 14 13 18 18 C 1.37876 * 120.00250 * 305.42128 * 16 14 13 19 19 N 1.31514 * 119.99709 * 6.37736 * 18 16 14 20 20 Si 1.86802 * 120.00277 * 186.37097 * 18 16 14 21 21 H 1.48500 * 109.46834 * 84.98333 * 20 18 16 22 22 H 1.48495 * 109.47120 * 204.98378 * 20 18 16 23 23 H 1.48496 * 109.46988 * 324.98360 * 20 18 16 24 24 C 1.52997 * 109.47087 * 150.00251 * 14 13 11 25 25 C 1.50709 * 109.47034 * 294.79739 * 24 14 13 26 26 O 1.20820 * 119.99768 * 359.97438 * 25 24 14 27 27 O 1.34232 * 119.99674 * 179.97438 * 25 24 14 28 28 C 1.45200 * 116.99362 * 179.97438 * 27 25 24 29 29 C 1.53010 * 109.46785 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.47011 * 300.00828 * 1 2 3 31 31 H 1.08998 * 109.46519 * 60.00093 * 1 2 3 32 32 H 1.08997 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47242 * 239.99620 * 2 1 3 34 34 H 1.09007 * 109.47076 * 120.00000 * 2 1 3 35 35 H 1.08996 * 109.47235 * 59.99615 * 3 2 1 36 36 H 1.09007 * 109.47044 * 299.99487 * 3 2 1 37 37 H 1.08996 * 110.48864 * 261.59753 * 6 4 3 38 38 H 1.09005 * 110.49015 * 24.23912 * 6 4 3 39 39 H 1.08994 * 110.75756 * 80.37568 * 7 6 4 40 40 H 1.09007 * 110.75400 * 203.74246 * 7 6 4 41 41 H 1.08999 * 110.48581 * 279.26884 * 8 7 6 42 42 H 1.09002 * 110.48515 * 156.62097 * 8 7 6 43 43 H 0.97004 * 120.00197 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47258 * 54.79079 * 24 14 13 45 45 H 1.09003 * 109.47548 * 174.79962 * 24 14 13 46 46 H 1.08999 * 109.46981 * 299.99460 * 28 27 25 47 47 H 1.08998 * 109.47545 * 60.00709 * 28 27 25 48 48 H 1.09001 * 109.46886 * 179.97438 * 29 28 27 49 49 H 1.08997 * 109.46446 * 300.00090 * 29 28 27 50 50 H 1.09001 * 109.47155 * 59.99604 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9428 0.8349 0.8253 6 6 4.1001 0.8949 -1.3407 7 6 5.3558 1.7537 -1.6319 8 6 4.9291 3.1600 -1.1426 9 6 4.0971 2.8826 0.1265 10 1 3.2629 3.5815 0.1876 11 6 4.9662 3.0090 1.3513 12 8 5.1526 2.0493 2.0614 13 8 5.5330 4.1877 1.6533 14 6 6.3569 4.2361 2.8478 15 1 6.8110 3.2594 3.0159 16 6 5.5020 4.6032 4.0333 17 1 5.4897 3.9690 4.9074 18 6 4.7354 5.7488 4.0020 19 7 4.6516 6.4538 2.8950 20 14 3.8156 6.2992 5.5319 21 1 4.7223 7.0998 6.3933 22 1 2.6486 7.1281 5.1364 23 1 3.3447 5.1072 6.2820 24 6 7.4559 5.2851 2.6672 25 6 8.3866 4.8528 1.5635 26 8 8.1911 3.8122 0.9815 27 8 9.4326 5.6239 1.2271 28 6 10.2870 5.1446 0.1554 29 6 11.4166 6.1485 -0.0839 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8901 37 1 4.3711 -0.1563 -1.2432 38 1 3.3569 1.0268 -2.1270 39 1 6.2124 1.3905 -1.0641 40 1 5.5759 1.7664 -2.6994 41 1 4.3198 3.6577 -1.8970 42 1 5.8052 3.7617 -0.9006 43 1 4.1125 7.2600 2.8730 44 1 7.0049 6.2429 2.4078 45 1 8.0169 5.3874 3.5962 46 1 10.7116 4.1799 0.4331 47 1 9.6994 5.0343 -0.7560 48 1 12.0583 5.7885 -0.8881 49 1 10.9923 7.1134 -0.3613 50 1 12.0041 6.2585 0.8276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870617750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:40 Heat of formation + Delta-G solvation = -214.637668 kcal Electronic energy + Delta-G solvation = -29678.690164 eV Core-core repulsion = 25669.665386 eV Total energy + Delta-G solvation = -4009.024778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.90845 -39.51492 -37.61759 -36.11978 -35.03776 -34.24957 -32.94278 -31.62228 -30.42024 -29.49725 -28.86056 -26.21815 -25.00302 -23.35487 -22.41553 -21.48267 -21.08315 -20.07538 -19.71245 -18.61909 -17.22419 -16.69356 -16.25646 -16.06860 -15.58894 -15.37555 -15.26409 -14.85801 -14.65056 -14.06578 -13.97754 -13.72156 -13.35619 -12.96281 -12.92518 -12.71355 -12.40024 -12.31175 -12.12749 -11.98293 -11.80534 -11.51725 -11.31774 -11.25790 -11.01339 -10.94149 -10.87541 -10.80365 -10.68758 -10.65599 -10.47009 -10.27721 -10.23086 -10.16284 -10.14985 -10.04696 -9.72208 -9.40603 -9.03777 -8.73855 -8.62351 -6.20483 -4.37089 2.97846 3.19370 3.28046 3.28826 3.33786 3.60412 4.07163 4.28740 4.80448 4.92396 5.02000 5.06694 5.10916 5.14165 5.21195 5.22670 5.36472 5.37930 5.45400 5.63758 5.74065 5.80435 5.83983 5.86376 5.87804 5.89871 5.91256 5.98185 6.04696 6.06784 6.09567 6.16282 6.18373 6.25028 6.30464 6.33966 6.42172 6.48764 6.55553 6.60315 6.66772 6.85033 6.94453 7.01915 7.23054 7.70244 7.97884 8.12869 8.48424 8.69235 9.25643 9.40689 10.82105 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.004897 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.227089 B = 5716.226368 C = 8407.230491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.111 4.111 4 C -0.090 4.090 5 H 0.098 0.902 6 C -0.114 4.114 7 C -0.126 4.126 8 C -0.109 4.109 9 C -0.084 4.084 10 H 0.099 0.901 11 C 0.472 3.528 12 O -0.534 6.534 13 O -0.320 6.320 14 C 0.231 3.769 15 H 0.044 0.956 16 C -0.551 4.551 17 H 0.069 0.931 18 C 0.081 3.919 19 N -0.853 5.853 20 Si 0.893 3.107 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.099 4.099 25 C 0.457 3.543 26 O -0.512 6.512 27 O -0.367 6.367 28 C 0.059 3.941 29 C -0.150 4.150 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.265 0.735 44 H 0.126 0.874 45 H 0.104 0.896 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.065 0.935 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.884 -3.733 -9.417 10.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.108 4.108 5 H 0.116 0.884 6 C -0.152 4.152 7 C -0.163 4.163 8 C -0.146 4.146 9 C -0.104 4.104 10 H 0.117 0.883 11 C 0.315 3.685 12 O -0.426 6.426 13 O -0.234 6.234 14 C 0.178 3.822 15 H 0.062 0.938 16 C -0.587 4.587 17 H 0.087 0.913 18 C -0.126 4.126 19 N -0.488 5.488 20 Si 0.720 3.280 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.136 4.136 25 C 0.302 3.698 26 O -0.400 6.400 27 O -0.285 6.285 28 C -0.015 4.015 29 C -0.207 4.207 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.144 0.856 45 H 0.122 0.878 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.092 0.908 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.859 -4.115 -9.471 10.492 hybrid contribution -0.501 0.351 0.786 0.996 sum 1.358 -3.763 -8.685 9.562 Atomic orbital electron populations 1.21780 0.96319 1.01131 1.01695 1.21529 0.95304 0.97250 1.02006 1.21709 0.94681 0.96538 1.01882 1.21881 0.94801 0.94980 0.99161 0.88400 1.22415 0.97064 0.99027 0.96649 1.22518 0.98090 0.95443 1.00259 1.22260 0.99897 0.97322 0.95157 1.21602 0.97810 0.98437 0.92506 0.88271 1.22871 0.78596 0.81825 0.85217 1.90470 1.60365 1.40079 1.51703 1.86578 1.58725 1.32275 1.45822 1.19983 0.87248 0.93452 0.81557 0.93794 1.21336 1.28065 1.08530 1.00817 0.91305 1.25101 0.95467 0.95988 0.96045 1.70034 1.37967 1.15579 1.25232 0.86590 0.79424 0.78886 0.83129 1.20061 1.20985 1.19673 1.21833 0.92910 1.05306 0.93575 1.24851 0.79029 0.81793 0.84163 1.90596 1.71822 1.24592 1.52967 1.86579 1.38545 1.51542 1.51810 1.22858 0.91345 0.97815 0.89496 1.21780 0.97074 0.99629 1.02251 0.92772 0.92984 0.93144 0.92123 0.91960 0.91858 0.92165 0.91972 0.91813 0.91367 0.91875 0.91232 0.90421 0.92498 0.85571 0.87796 0.91867 0.91722 0.90833 0.91602 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.91 37.16 0.37 -1.24 16 2 C -0.12 -1.49 5.79 -26.73 -0.15 -1.64 16 3 C -0.11 -1.54 4.34 -26.73 -0.12 -1.66 16 4 C -0.09 -1.46 2.52 -89.50 -0.23 -1.69 16 5 H 0.10 1.86 6.40 -51.93 -0.33 1.53 16 6 C -0.11 -1.56 5.54 -25.07 -0.14 -1.70 16 7 C -0.13 -1.87 6.91 -24.74 -0.17 -2.04 16 8 C -0.11 -1.82 6.36 -25.07 -0.16 -1.98 16 9 C -0.08 -1.59 3.06 -90.65 -0.28 -1.87 16 10 H 0.10 1.85 7.67 -51.93 -0.40 1.45 16 11 C 0.47 11.36 7.13 36.01 0.26 11.62 16 12 O -0.53 -14.04 14.43 -18.75 -0.27 -14.31 16 13 O -0.32 -8.25 7.83 -44.41 -0.35 -8.60 16 14 C 0.23 5.94 1.65 -27.89 -0.05 5.89 16 15 H 0.04 1.20 6.96 -51.93 -0.36 0.84 16 16 C -0.55 -14.89 8.88 -34.44 -0.31 -15.19 16 17 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 18 C 0.08 2.13 5.23 -17.82 -0.09 2.04 16 19 N -0.85 -22.64 11.23 55.43 0.62 -22.02 16 20 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.10 -2.21 5.30 -27.88 -0.15 -2.36 16 25 C 0.46 9.65 7.84 36.01 0.28 9.94 16 26 O -0.51 -11.85 15.18 -23.89 -0.36 -12.21 16 27 O -0.37 -6.65 10.22 -39.26 -0.40 -7.05 16 28 C 0.06 0.85 6.19 37.16 0.23 1.08 16 29 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.67 7.51 -51.93 -0.39 0.28 16 34 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.76 8.01 -51.92 -0.42 0.35 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.76 7.76 -51.93 -0.40 0.36 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.08 1.49 7.66 -51.93 -0.40 1.09 16 43 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 44 H 0.13 2.99 6.90 -51.93 -0.36 2.63 16 45 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 46 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 47 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 403.80 15.07 6.09 6.09 Total: -1.00 -30.50 403.80 -8.96 -39.45 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -8.94 Total: 5.40 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -0.32 Total: -2.00 kcal Atomic # 7 Polarization: -22.64 SS G_CDS: 0.62 Total: -22.02 kcal Atomic # 8 Polarization: -40.79 SS G_CDS: -1.38 Total: -42.17 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.50 -8.96 -39.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.183 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds