Wall clock time and date at job start Tue Mar 31 2020 15:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.53001 * 109.47397 * 179.97438 * 3 2 1 5 5 H 1.09000 * 110.01710 * 306.39347 * 4 3 2 6 6 C 1.54266 * 110.07174 * 67.80471 * 4 3 2 7 7 C 1.54893 * 104.19465 * 142.92012 * 6 4 3 8 8 C 1.54889 * 102.74889 * 322.05463 * 7 6 4 9 9 C 1.53873 * 110.03237 * 184.99547 * 4 3 2 10 10 H 1.08996 * 110.03223 * 0.02562 * 9 4 3 11 11 C 1.50705 * 110.02730 * 121.38361 * 9 4 3 12 12 O 1.20826 * 120.00060 * 359.97438 * 11 9 4 13 13 O 1.34235 * 119.99729 * 179.97438 * 11 9 4 14 14 C 1.45195 * 116.99923 * 179.97438 * 13 11 9 15 15 H 1.09005 * 109.47139 * 30.00307 * 14 13 11 16 16 C 1.50694 * 109.47519 * 270.00241 * 14 13 11 17 17 H 1.08001 * 120.00331 * 125.41761 * 16 14 13 18 18 C 1.37876 * 120.00250 * 305.42128 * 16 14 13 19 19 N 1.31514 * 119.99709 * 6.37736 * 18 16 14 20 20 Si 1.86802 * 120.00277 * 186.37097 * 18 16 14 21 21 H 1.48500 * 109.46834 * 84.98333 * 20 18 16 22 22 H 1.48495 * 109.47120 * 204.98378 * 20 18 16 23 23 H 1.48496 * 109.46988 * 324.98360 * 20 18 16 24 24 C 1.52997 * 109.47087 * 150.00251 * 14 13 11 25 25 C 1.50709 * 109.47034 * 294.79739 * 24 14 13 26 26 O 1.20820 * 119.99768 * 359.97438 * 25 24 14 27 27 O 1.34232 * 119.99674 * 179.97438 * 25 24 14 28 28 C 1.45200 * 116.99362 * 179.97438 * 27 25 24 29 29 C 1.53010 * 109.46785 * 180.02562 * 28 27 25 30 30 H 1.09000 * 109.47011 * 300.00828 * 1 2 3 31 31 H 1.08998 * 109.46519 * 60.00093 * 1 2 3 32 32 H 1.08997 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47242 * 239.99620 * 2 1 3 34 34 H 1.09007 * 109.47076 * 120.00000 * 2 1 3 35 35 H 1.08996 * 109.47235 * 59.99615 * 3 2 1 36 36 H 1.09007 * 109.47044 * 299.99487 * 3 2 1 37 37 H 1.08996 * 110.48864 * 261.59753 * 6 4 3 38 38 H 1.09005 * 110.49015 * 24.23912 * 6 4 3 39 39 H 1.08994 * 110.75756 * 80.37568 * 7 6 4 40 40 H 1.09007 * 110.75400 * 203.74246 * 7 6 4 41 41 H 1.08999 * 110.48581 * 279.26884 * 8 7 6 42 42 H 1.09002 * 110.48515 * 156.62097 * 8 7 6 43 43 H 0.97004 * 120.00197 * 180.02562 * 19 18 16 44 44 H 1.09003 * 109.47258 * 54.79079 * 24 14 13 45 45 H 1.09003 * 109.47548 * 174.79962 * 24 14 13 46 46 H 1.08999 * 109.46981 * 299.99460 * 28 27 25 47 47 H 1.08998 * 109.47545 * 60.00709 * 28 27 25 48 48 H 1.09001 * 109.46886 * 179.97438 * 29 28 27 49 49 H 1.08997 * 109.46446 * 300.00090 * 29 28 27 50 50 H 1.09001 * 109.47155 * 59.99604 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9428 0.8349 0.8253 6 6 4.1001 0.8949 -1.3407 7 6 5.3558 1.7537 -1.6319 8 6 4.9291 3.1600 -1.1426 9 6 4.0971 2.8826 0.1265 10 1 3.2629 3.5815 0.1876 11 6 4.9662 3.0090 1.3513 12 8 5.1526 2.0493 2.0614 13 8 5.5330 4.1877 1.6533 14 6 6.3569 4.2361 2.8478 15 1 6.8110 3.2594 3.0159 16 6 5.5020 4.6032 4.0333 17 1 5.4897 3.9690 4.9074 18 6 4.7354 5.7488 4.0020 19 7 4.6516 6.4538 2.8950 20 14 3.8156 6.2992 5.5319 21 1 4.7223 7.0998 6.3933 22 1 2.6486 7.1281 5.1364 23 1 3.3447 5.1072 6.2820 24 6 7.4559 5.2851 2.6672 25 6 8.3866 4.8528 1.5635 26 8 8.1911 3.8122 0.9815 27 8 9.4326 5.6239 1.2271 28 6 10.2870 5.1446 0.1554 29 6 11.4166 6.1485 -0.0839 30 1 -0.3633 0.5140 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8899 36 1 1.6768 1.9563 -0.8901 37 1 4.3711 -0.1563 -1.2432 38 1 3.3569 1.0268 -2.1270 39 1 6.2124 1.3905 -1.0641 40 1 5.5759 1.7664 -2.6994 41 1 4.3198 3.6577 -1.8970 42 1 5.8052 3.7617 -0.9006 43 1 4.1125 7.2600 2.8730 44 1 7.0049 6.2429 2.4078 45 1 8.0169 5.3874 3.5962 46 1 10.7116 4.1799 0.4331 47 1 9.6994 5.0343 -0.7560 48 1 12.0583 5.7885 -0.8881 49 1 10.9923 7.1134 -0.3613 50 1 12.0041 6.2585 0.8276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870617750.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:39 Heat of formation + Delta-G solvation = -228.419607 kcal Electronic energy + Delta-G solvation = -29679.287794 eV Core-core repulsion = 25669.665386 eV Total energy + Delta-G solvation = -4009.622408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.62744 -41.17065 -39.17022 -37.74669 -36.95684 -35.36090 -34.93607 -32.97220 -32.10640 -30.66383 -30.23542 -28.16218 -26.18248 -24.91425 -23.79979 -22.90484 -22.35079 -21.61109 -21.25706 -20.17749 -19.04196 -18.51796 -17.97979 -17.59015 -17.29669 -17.19208 -16.68360 -16.47130 -15.98777 -15.59658 -15.45935 -15.18080 -14.60982 -14.35142 -14.26966 -14.02937 -13.75237 -13.71038 -13.47835 -13.41773 -13.08534 -13.00848 -12.84362 -12.76908 -12.68495 -12.47558 -12.30615 -12.20392 -12.11902 -11.99022 -11.79510 -11.73872 -11.58891 -11.50513 -11.49625 -11.39711 -11.35045 -11.26412 -10.93271 -10.70847 -10.66691 -8.23125 -6.48606 1.25801 1.39714 1.41736 1.51097 1.69870 1.77884 2.29927 2.37084 3.07733 3.51232 3.63809 3.81892 3.91788 4.00032 4.10441 4.12188 4.17668 4.23831 4.33221 4.34399 4.43578 4.45974 4.52453 4.57913 4.63057 4.69447 4.74646 4.75818 4.86406 4.92461 4.94932 4.97288 5.00034 5.03151 5.10013 5.11991 5.16652 5.23664 5.24848 5.28112 5.35656 5.45209 5.47835 5.48985 5.58537 5.61684 5.93484 6.17659 6.58000 6.83178 7.23316 7.38038 8.79519 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.004897 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.227089 B = 5716.226368 C = 8407.230491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.106 4.106 4 C -0.088 4.088 5 H 0.062 0.938 6 C -0.103 4.103 7 C -0.122 4.122 8 C -0.104 4.104 9 C -0.084 4.084 10 H 0.102 0.898 11 C 0.457 3.543 12 O -0.567 6.567 13 O -0.331 6.331 14 C 0.230 3.770 15 H 0.013 0.987 16 C -0.580 4.580 17 H 0.053 0.947 18 C 0.048 3.952 19 N -0.869 5.869 20 Si 0.955 3.045 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.281 1.281 24 C -0.091 4.091 25 C 0.465 3.535 26 O -0.538 6.538 27 O -0.363 6.363 28 C 0.048 3.952 29 C -0.141 4.141 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.045 0.955 35 H 0.040 0.960 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.037 0.963 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.271 0.729 44 H 0.116 0.884 45 H 0.122 0.878 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.068 0.932 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.307 -3.146 -11.475 11.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.143 4.143 4 C -0.106 4.106 5 H 0.080 0.920 6 C -0.140 4.140 7 C -0.159 4.159 8 C -0.142 4.142 9 C -0.104 4.104 10 H 0.120 0.880 11 C 0.302 3.698 12 O -0.461 6.461 13 O -0.245 6.245 14 C 0.176 3.824 15 H 0.031 0.969 16 C -0.617 4.617 17 H 0.071 0.929 18 C -0.158 4.158 19 N -0.504 5.504 20 Si 0.779 3.221 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.206 1.206 24 C -0.129 4.129 25 C 0.310 3.690 26 O -0.428 6.428 27 O -0.281 6.281 28 C -0.025 4.025 29 C -0.198 4.198 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.056 0.944 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.134 0.866 45 H 0.139 0.861 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.122 0.878 49 H 0.087 0.913 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.307 -3.504 -11.540 12.131 hybrid contribution -0.235 0.156 1.402 1.430 sum 1.072 -3.347 -10.139 10.731 Atomic orbital electron populations 1.21761 0.94925 1.02105 1.01890 1.21509 0.96487 0.95737 1.02097 1.21684 0.92720 0.98025 1.01899 1.21864 0.96489 0.92557 0.99725 0.91966 1.22403 0.96937 0.99088 0.95592 1.22505 0.97592 0.94152 1.01699 1.22283 0.98787 0.98419 0.94704 1.21830 0.97074 1.00480 0.90971 0.88034 1.24026 0.78435 0.80910 0.86379 1.90439 1.61599 1.40860 1.53205 1.86576 1.58938 1.33312 1.45679 1.19910 0.87877 0.92787 0.81795 0.96859 1.21418 1.29919 1.09422 1.00922 0.92919 1.25697 0.95777 0.95513 0.98811 1.70108 1.38051 1.15695 1.26523 0.85635 0.78558 0.78171 0.79709 1.18406 1.20061 1.20614 1.21599 0.92697 1.03358 0.95207 1.24414 0.79550 0.81469 0.83536 1.90587 1.72714 1.25741 1.53734 1.86545 1.37821 1.50760 1.52949 1.23298 0.91728 0.99425 0.88047 1.21810 0.95773 0.98599 1.03640 0.93691 0.91692 0.91820 0.90361 0.93589 0.94073 0.89866 0.90993 0.88516 0.94416 0.88510 0.87840 0.93604 0.91977 0.86598 0.86061 0.91709 0.91927 0.87782 0.91336 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.91 71.98 0.71 -2.14 16 2 C -0.12 -2.73 5.79 30.59 0.18 -2.56 16 3 C -0.11 -2.84 4.34 30.59 0.13 -2.71 16 4 C -0.09 -2.86 2.52 -10.07 -0.03 -2.88 16 5 H 0.06 2.49 6.40 -2.39 -0.02 2.47 16 6 C -0.10 -2.58 5.54 31.67 0.18 -2.41 16 7 C -0.12 -3.46 6.91 31.89 0.22 -3.24 16 8 C -0.10 -3.43 6.36 31.67 0.20 -3.23 16 9 C -0.08 -3.25 3.06 -10.81 -0.03 -3.28 16 10 H 0.10 3.82 7.67 -2.39 -0.02 3.80 16 11 C 0.46 23.32 7.13 71.24 0.51 23.83 16 12 O -0.57 -32.01 14.43 21.96 0.32 -31.70 16 13 O -0.33 -17.99 7.83 -46.55 -0.36 -18.35 16 14 C 0.23 12.52 1.65 29.85 0.05 12.57 16 15 H 0.01 0.78 6.96 -2.38 -0.02 0.77 16 16 C -0.58 -32.81 8.88 25.60 0.23 -32.58 16 17 H 0.05 3.05 7.82 -2.91 -0.02 3.03 16 18 C 0.05 2.57 5.23 84.65 0.44 3.01 16 19 N -0.87 -46.72 11.23 21.45 0.24 -46.48 16 20 Si 0.96 41.95 29.54 68.60 2.03 43.98 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 C -0.09 -4.24 5.30 29.85 0.16 -4.08 16 25 C 0.47 20.28 7.84 71.24 0.56 20.84 16 26 O -0.54 -26.03 15.18 26.90 0.41 -25.62 16 27 O -0.36 -13.18 10.22 -51.44 -0.53 -13.71 16 28 C 0.05 1.36 6.19 71.99 0.45 1.81 16 29 C -0.14 -2.68 10.29 71.99 0.74 -1.94 16 30 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.50 7.51 -2.39 -0.02 1.49 16 34 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.86 8.01 -2.38 -0.02 1.84 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.10 1.85 7.76 -2.38 -0.02 1.83 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.05 1.80 7.66 -2.39 -0.02 1.78 16 43 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 44 H 0.12 5.67 6.90 -2.39 -0.02 5.65 16 45 H 0.12 5.08 8.14 -2.39 -0.02 5.06 16 46 H 0.06 1.80 8.13 -2.39 -0.02 1.78 16 47 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 48 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 50 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -70.39 403.80 7.69 -62.70 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.90 Total: 28.18 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 4.69 Total: 1.00 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.24 Total: -46.48 kcal Atomic # 8 Polarization: -89.22 SS G_CDS: -0.17 Total: -89.38 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -70.39 7.69 -62.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870617750.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.717 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds