Wall clock time and date at job start Tue Mar 31 2020 14:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99942 * 2 1 4 4 H 1.48496 * 109.47247 * 240.00294 * 3 2 1 5 5 H 1.48503 * 109.46810 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46719 * 120.00321 * 3 2 1 7 7 C 1.37876 * 120.00150 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00183 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47292 * 180.02562 * 9 7 2 11 11 C 1.46956 * 110.99677 * 170.00200 * 10 9 7 12 12 C 1.53057 * 109.36162 * 183.18894 * 11 10 9 13 13 N 1.46954 * 109.36263 * 301.59585 * 12 11 10 14 14 C 1.46908 * 110.99966 * 183.18687 * 13 12 11 15 15 N 1.46506 * 109.46840 * 66.20365 * 14 13 12 16 16 C 1.34821 * 125.89311 * 94.71612 * 15 14 13 17 17 C 1.36436 * 107.60844 * 179.90022 * 16 15 14 18 18 C 1.48481 * 126.22272 * 180.13951 * 17 16 15 19 19 C 1.39299 * 120.11268 * 359.96304 * 18 17 16 20 20 C 1.38028 * 119.87313 * 179.74509 * 19 18 17 21 21 C 1.38312 * 120.12089 * 0.53166 * 20 19 18 22 22 C 1.38319 * 120.23658 * 359.72505 * 21 20 19 23 23 C 1.38022 * 120.11641 * 0.02562 * 22 21 20 24 24 C 1.40841 * 107.55315 * 0.35937 * 17 16 15 25 25 N 1.30667 * 108.10032 * 359.77860 * 24 17 16 26 26 C 1.46956 * 110.88042 * 59.32532 * 13 12 11 27 27 C 1.46954 * 110.99900 * 293.79852 * 10 9 7 28 28 H 0.96999 * 120.00715 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46825 * 60.00370 * 9 7 2 30 30 H 1.09002 * 109.47091 * 300.00411 * 9 7 2 31 31 H 1.09002 * 109.48908 * 303.15220 * 11 10 9 32 32 H 1.09002 * 109.49369 * 63.22349 * 11 10 9 33 33 H 1.08997 * 109.48880 * 61.56749 * 12 11 10 34 34 H 1.09004 * 109.48844 * 181.62946 * 12 11 10 35 35 H 1.08997 * 109.46863 * 186.20099 * 14 13 12 36 36 H 1.09003 * 109.47129 * 306.20540 * 14 13 12 37 37 H 1.07995 * 126.19667 * 0.03099 * 16 15 14 38 38 H 1.07994 * 120.06245 * 359.97438 * 19 18 17 39 39 H 1.08007 * 119.93889 * 180.25375 * 20 19 18 40 40 H 1.08004 * 119.88753 * 179.69863 * 21 20 19 41 41 H 1.07997 * 119.93918 * 180.02562 * 22 21 20 42 42 H 1.08000 * 120.06052 * 180.02562 * 23 22 21 43 43 H 1.08009 * 125.95027 * 179.79712 * 24 17 16 44 44 H 1.09002 * 109.48908 * 180.71202 * 26 13 12 45 45 H 1.09002 * 109.49369 * 60.64073 * 26 13 12 46 46 H 1.08997 * 109.49355 * 296.78047 * 27 10 9 47 47 H 1.09003 * 109.49032 * 56.82589 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5210 -4.8939 0.2377 12 6 2.5565 -6.0187 0.3093 13 7 3.3195 -6.0592 -0.9460 14 6 4.2742 -7.1758 -0.9460 15 7 3.5417 -8.4445 -0.9460 16 6 3.2243 -9.1739 -2.0345 17 6 2.5480 -10.2794 -1.6078 18 6 2.0082 -11.3636 -2.4667 19 6 2.1729 -11.3079 -3.8488 20 6 1.6737 -12.3211 -4.6420 21 6 1.0014 -13.3848 -4.0680 22 6 0.8305 -13.4424 -2.6966 23 6 1.3301 -12.4371 -1.8936 24 6 2.4507 -10.2025 -0.2048 25 7 3.0453 -9.1058 0.1838 26 6 4.0043 -4.7809 -1.1842 27 6 2.9687 -3.6562 -1.2558 28 1 -0.4851 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8904 30 1 0.6247 -2.5571 0.8897 31 1 0.9734 -4.8433 1.1788 32 1 0.8254 -5.0915 -0.5780 33 1 3.2356 -5.8353 1.1420 34 1 2.0486 -6.9718 0.4571 35 1 4.9008 -7.1180 -1.8359 36 1 4.9009 -7.1180 -0.0559 37 1 3.4640 -8.9288 -3.0586 38 1 2.6935 -10.4753 -4.2984 39 1 1.8044 -12.2810 -5.7134 40 1 0.6081 -14.1732 -4.6927 41 1 0.3051 -14.2754 -2.2534 42 1 1.1965 -12.4832 -0.8229 43 1 1.9687 -10.9245 0.4379 44 1 4.5519 -4.8316 -2.1253 45 1 4.6998 -4.5834 -0.3685 46 1 2.2897 -3.8396 -2.0885 47 1 3.4764 -2.7030 -1.4038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872734932.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:02 Heat of formation + Delta-G solvation = 123.909257 kcal Electronic energy + Delta-G solvation = -26499.255492 eV Core-core repulsion = 22876.805631 eV Total energy + Delta-G solvation = -3622.449860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42498 -39.10774 -38.65970 -35.43760 -33.05706 -32.38463 -31.76897 -31.03966 -30.53510 -29.04066 -27.89884 -25.93052 -24.05222 -23.21913 -22.93235 -22.75124 -21.44009 -20.47542 -20.37714 -19.28214 -17.79577 -16.50284 -16.39734 -16.25001 -15.63259 -14.98591 -14.86180 -14.79730 -14.61803 -14.32498 -14.25782 -13.81477 -13.63195 -13.42785 -13.31726 -13.27046 -12.95184 -12.85909 -12.34812 -12.07195 -11.76112 -11.53072 -11.25155 -11.17656 -10.96500 -10.83239 -10.72925 -10.68226 -10.47570 -10.43407 -9.90668 -9.82725 -9.60058 -9.21858 -9.12444 -8.49699 -8.42552 -7.91392 -7.28466 -6.04573 -4.06631 0.91580 1.23265 1.81184 2.31235 2.73705 3.31215 3.35696 3.38064 3.81201 3.90167 4.24041 4.39803 4.55372 4.72392 4.75560 4.78660 4.88216 4.90659 4.96008 5.05415 5.20930 5.24679 5.30547 5.30941 5.43707 5.49558 5.62387 5.66501 5.74919 5.79471 5.83343 5.88032 5.95204 6.15073 6.22649 6.33779 6.39042 6.43190 6.48955 6.50791 6.58440 6.69123 6.82251 6.91651 7.09932 7.29682 7.32579 7.55492 7.76195 8.05483 8.16487 8.51047 9.00267 9.57559 11.06209 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.024467 B = 0.002076 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.102124 B =13486.567416 C =13707.099472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.058 3.942 12 C 0.062 3.938 13 N -0.555 5.555 14 C 0.299 3.701 15 N -0.356 5.356 16 C 0.093 3.907 17 C -0.215 4.215 18 C 0.016 3.984 19 C -0.126 4.126 20 C -0.113 4.113 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.122 4.122 24 C 0.064 3.936 25 N -0.290 5.290 26 C 0.063 3.937 27 C 0.068 3.932 28 H 0.262 0.738 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.070 0.930 37 H 0.174 0.826 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.183 0.817 44 H 0.074 0.926 45 H 0.046 0.954 46 H 0.030 0.970 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 -25.473 -7.066 27.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.071 4.071 12 C -0.065 4.065 13 N -0.282 5.282 14 C 0.088 3.912 15 N -0.136 5.136 16 C -0.055 4.055 17 C -0.226 4.226 18 C 0.015 3.985 19 C -0.144 4.144 20 C -0.131 4.131 21 C -0.155 4.155 22 C -0.131 4.131 23 C -0.141 4.141 24 C -0.123 4.123 25 N -0.109 5.109 26 C -0.065 4.065 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.192 0.808 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.199 0.801 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.048 0.952 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.991 -24.413 -6.029 26.100 hybrid contribution 0.000 0.459 -0.766 0.892 sum 6.991 -23.955 -6.795 25.863 Atomic orbital electron populations 1.69946 1.06073 1.26932 1.50750 1.25001 0.94876 0.99336 0.95424 0.86550 0.79423 0.82746 0.78604 1.20279 1.21350 1.20188 1.21095 0.93366 0.89927 1.50369 0.91977 1.19698 0.90020 0.87205 0.96167 1.62307 1.28283 1.02817 1.32954 1.22057 0.94717 0.89785 1.00541 1.22228 0.96223 0.99283 0.88802 1.62144 1.25843 1.03325 1.36879 1.22115 0.88739 0.77267 1.03084 1.48600 1.43255 1.17919 1.03869 1.22515 0.97581 0.91882 0.93542 1.18846 1.11866 0.98700 0.93198 1.18083 0.95894 0.92519 0.92026 1.21102 1.01364 0.99170 0.92780 1.21045 0.98102 0.94260 0.99650 1.21116 1.00503 0.98792 0.95096 1.21051 0.99652 0.98561 0.93829 1.21083 0.99064 0.94060 0.99856 1.23909 0.98590 0.95741 0.94094 1.77283 1.16675 1.08211 1.08766 1.22222 0.96451 0.87375 1.00405 1.21981 0.95388 0.97141 0.91542 0.92826 0.99055 0.95204 0.90892 0.95309 0.93973 0.90316 0.87536 0.91236 0.80849 0.86277 0.86205 0.86418 0.86186 0.86061 0.80051 0.90740 0.93611 0.95221 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.19 8.47 -34.44 -0.29 -14.48 16 8 H 0.06 1.69 7.13 -52.49 -0.37 1.32 16 9 C 0.19 5.10 4.72 -4.98 -0.02 5.07 16 10 N -0.54 -11.67 4.70 -235.90 -1.11 -12.78 16 11 C 0.06 1.11 5.61 -3.76 -0.02 1.09 16 12 C 0.06 1.00 5.47 -3.77 -0.02 0.98 16 13 N -0.56 -7.85 4.85 -238.35 -1.16 -9.01 16 14 C 0.30 3.31 6.14 -63.30 -0.39 2.93 16 15 N -0.36 -4.27 3.43 -64.11 -0.22 -4.49 16 16 C 0.09 0.98 10.87 -16.89 -0.18 0.80 16 17 C -0.21 -2.33 6.04 -105.34 -0.64 -2.96 16 18 C 0.02 0.16 5.88 -104.88 -0.62 -0.45 16 19 C -0.13 -1.14 9.57 -39.26 -0.38 -1.51 16 20 C -0.11 -0.92 10.03 -39.63 -0.40 -1.32 16 21 C -0.14 -1.08 10.04 -39.52 -0.40 -1.48 16 22 C -0.11 -0.91 10.03 -39.63 -0.40 -1.31 16 23 C -0.12 -1.10 9.58 -39.27 -0.38 -1.47 16 24 C 0.06 0.72 11.42 -17.06 -0.19 0.52 16 25 N -0.29 -3.82 11.13 30.80 0.34 -3.48 16 26 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 27 C 0.07 1.29 5.43 -3.77 -0.02 1.27 16 28 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 31 H 0.07 1.39 8.07 -51.93 -0.42 0.97 16 32 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 35 H 0.11 0.87 8.01 -51.93 -0.42 0.45 16 36 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.17 1.34 7.28 -52.49 -0.38 0.95 16 38 H 0.12 0.89 7.02 -52.49 -0.37 0.52 16 39 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 40 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 42 H 0.12 0.89 7.05 -52.49 -0.37 0.52 16 43 H 0.18 1.50 7.35 -52.48 -0.39 1.11 16 44 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -32.25 381.13 -12.32 -44.57 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -7.18 Total: -1.06 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -4.46 Total: -9.97 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -1.41 Total: -55.74 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.25 -12.32 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872734932.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.479 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds